Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 5.1e-182 641.0 326 100.0
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 3.8e-177 624.8 326 97.9
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 3.9e-158 561.6 326 86.8
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 8.7e-158 560.5 326 86.2
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 1.5e-157 559.7 326 86.5
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 1.9e-157 559.3 326 87.1
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 7.4e-149 530.8 323 84.5
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 3.1e-131 472.2 330 74.5
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 4.1e-131 471.9 328 73.5
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.2e-130 470.3 328 73.5
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 1.6e-130 469.9 331 73.1
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 5.9e-130 468.0 327 73.7
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 7.7e-130 467.6 327 74.3
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 7.7e-130 467.6 328 73.8
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 1.3e-129 466.8 327 74.0
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 2.9e-129 465.7 329 72.6
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 8.0e-127 457.6 322 73.9
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 1.0e-126 457.2 329 72.0
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 1.0e-126 457.2 326 71.8
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 3.0e-126 455.7 345 70.1
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 4.0e-126 455.3 293 78.2
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 4.0e-126 455.3 359 67.7
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 8.8e-126 454.1 324 72.5
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 8.8e-126 454.1 329 70.8
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 8.8e-126 454.1 327 69.4
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.5e-125 453.4 327 70.0
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 1.5e-125 453.4 324 72.2
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 1.5e-125 453.4 331 69.8
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 2.0e-125 453.0 330 69.7
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 2.6e-125 452.6 328 72.9
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 2.6e-125 452.6 327 69.1
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 3.4e-125 452.2 327 70.6
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 3.4e-125 452.2 327 70.9
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 7.5e-125 451.1 326 71.5
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 7.5e-125 451.1 326 71.5
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 1.7e-124 449.9 326 71.5
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 2.2e-124 449.5 349 69.1
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 2.2e-124 449.5 331 71.9
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 3.7e-124 448.7 329 70.2
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 6.3e-124 448.0 327 70.0
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 6.3e-124 448.0 326 69.9
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 1.1e-123 447.2 331 68.3
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 1.4e-123 446.8 326 69.3
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 3.1e-123 445.7 326 68.4
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 3.1e-123 445.7 367 65.7
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 4.1e-123 445.3 331 68.6
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 4.1e-123 445.3 327 70.3
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 7.0e-123 444.5 323 72.4
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 9.1e-123 444.1 329 70.8
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.6e-122 443.4 329 71.1
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 1.6e-122 443.4 329 69.9
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 2.7e-122 442.6 329 71.1
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 4.5e-122 441.8 332 68.1
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 7.7e-122 441.0 331 68.3
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 7.7e-122 441.0 327 68.2
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 1.0e-121 440.7 332 67.2
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.7e-121 439.9 329 70.2
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 5.0e-121 438.3 329 68.7
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 8.6e-121 437.6 328 67.1
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 8.6e-121 437.6 329 69.9
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 4.2e-120 435.3 327 68.8
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 3.6e-119 432.2 328 65.5
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 3.6e-119 432.2 326 66.0
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 4.7e-119 431.8 326 65.3
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 4.7e-119 431.8 326 66.9
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 6.1e-119 431.4 326 65.6
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 8.0e-119 431.0 327 68.8
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 1.5e-117 426.8 325 67.4
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 2.0e-117 426.4 328 68.0
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 9.8e-117 424.1 326 69.0
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 1.3e-116 423.7 331 65.3
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 2.8e-116 422.5 322 67.1
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 8.3e-116 421.0 328 65.2
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.1e-115 420.6 326 65.0
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.1e-115 420.6 326 66.0
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.1e-115 420.6 326 66.0
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 1.8e-115 419.9 328 66.8
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 3.1e-115 419.1 326 65.6
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 4.1e-115 418.7 326 65.0
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 5.4e-115 418.3 328 64.6
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 3.5e-114 415.6 330 64.5
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 5.9e-114 414.8 327 65.7
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 7.8e-114 414.5 325 64.0
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 7.8e-114 414.5 326 65.3
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 1.0e-113 414.1 325 64.6
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.0e-113 414.1 325 64.0
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 1.3e-113 413.7 325 64.6
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 1.7e-113 413.3 327 64.8
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 2.3e-113 412.9 327 64.2
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 1.5e-112 410.2 399 57.4
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 1.9e-112 409.8 327 65.4
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 2.1e-111 406.4 325 61.2
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 2.1e-111 406.4 276 75.4
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 1.4e-110 403.7 326 65.0
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 1.5e-109 400.2 326 62.6
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 2.0e-109 399.8 335 60.0
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 2.6e-109 399.4 324 62.3
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.7e-106 389.4 316 63.9
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 4.6e-106 388.7 325 60.3
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 3.9e-105 385.6 326 63.2
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 1.5e-104 383.6 271 73.1
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 5.6e-104 381.7 324 62.3
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 2.6e-101 372.9 326 57.7
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 5.4e-99 365.2 324 59.9
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 2.7e-98 362.8 331 58.3
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 3.3e-96 355.9 327 57.5
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 5.1e-89 332.0 326 54.9
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 5.6e-88 328.6 327 54.4
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 1.8e-86 323.6 323 55.4
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 1.5e-85 320.5 322 55.3
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 2.9e-84 316.2 320 53.8
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 4.9e-84 315.5 325 57.2
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 4.9e-84 315.5 315 53.0
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 5.1e-81 305.4 275 60.0
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 8.7e-81 304.7 320 50.6
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 2.5e-80 303.1 315 52.7
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 6.4e-76 288.5 323 48.6
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 8.7e-73 278.1 177 80.2
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 6.2e-71 271.9 197 71.1
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 6.2e-63 245.4 323 45.5
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 6.9e-62 241.9 213 58.2
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 9.0e-62 241.5 195 62.6
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 2.0e-61 240.4 285 43.9
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 5.5e-59 232.3 186 64.5
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 8.7e-57 224.9 276 48.2
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 2.1e-55 220.3 155 69.7
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 4.0e-54 216.1 286 41.3
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.5e-53 214.2 180 64.4
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.2e-52 210.3 323 40.9
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 1.4e-51 207.6 181 58.6
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 9.3e-51 204.9 143 69.9
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 2.5e-48 196.8 133 72.9
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 6.9e-46 188.7 131 70.2
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 5.0e-44 182.6 144 63.2
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 7.2e-43 178.7 265 38.1
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.4e-41 174.5 131 68.7
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 3.3e-40 169.9 96 79.2
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 2.2e-39 167.2 184 46.7
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 6.3e-39 165.6 260 37.3
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 1.1e-38 164.9 128 68.0
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 9.1e-38 161.8 144 58.3
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 5.9e-37 159.1 114 68.4
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.9e-35 154.1 140 57.9
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 6.7e-33 145.6 196 41.3
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 4.4e-32 142.9 142 50.7
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 5.7e-32 142.5 153 47.1
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 1.4e-30 137.9 177 42.9
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.2e-28 130.6 127 49.6
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.9e-27 127.5 145 47.6
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 1.9e-27 127.5 82 69.5
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 1.4e-25 121.3 126 50.0
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.0e-20 105.1 117 48.7
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 9.4e-19 98.6 195 38.5
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 2.1e-18 97.4 68 73.5
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 2.2e-12 77.4 78 56.4
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 2.2e-12 77.4 78 56.4
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 1.9e-11 74.3 77 54.5
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 3.7e-07 60.1 120 40.8
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 1.1e-06 58.5 61 57.4
SalBow2G0531 Salvia bowleyana HOM05D004465 ORTHO05D351996 2.4e-06 57.4 33 78.8


User provided reference genes

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