Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1827.8 939 100.0
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1706.4 952 92.1
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1699.5 952 91.5
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1692.2 951 91.7
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1661.0 908 91.4
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1614.7 951 86.4
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1611.3 951 86.6
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1597.8 945 86.0
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1594.7 950 85.9
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1533.1 924 83.9
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1531.2 955 82.4
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1520.0 948 80.9
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1520.0 930 81.4
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1519.2 903 84.5
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1514.2 909 81.3
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1513.0 932 81.4
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1507.3 883 83.4
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1506.1 955 79.3
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1505.3 920 81.1
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1505.3 871 82.9
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1500.3 923 81.0
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1500.3 905 82.1
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1498.0 905 85.1
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1495.3 923 80.2
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1494.2 946 79.2
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1491.5 925 80.8
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1489.6 949 78.3
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1488.8 924 81.0
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1484.5 908 80.4
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1481.5 950 78.2
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1480.7 925 80.5
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1480.7 932 80.2
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1478.4 918 80.5
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1478.0 945 77.2
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1478.0 930 80.2
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1474.9 917 79.8
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1473.4 922 79.9
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1472.6 883 80.6
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1472.6 906 80.1
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1471.8 905 80.0
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1471.4 925 80.0
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1471.1 921 80.1
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1468.0 929 80.0
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1468.0 922 79.7
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1466.8 956 77.2
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1466.1 922 79.2
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1465.3 923 78.8
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1464.9 929 78.5
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1464.9 929 78.5
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1464.5 918 79.6
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1464.1 896 80.7
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1462.6 954 77.3
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1462.2 918 79.0
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1460.3 972 76.0
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1459.9 889 80.5
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1459.9 927 78.3
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1456.8 933 78.3
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1456.0 918 78.8
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1454.5 950 77.5
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1452.6 927 78.2
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1451.0 919 78.9
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1450.3 922 78.6
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1449.9 935 78.9
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1449.5 924 79.3
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1449.5 951 76.8
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1449.1 925 78.4
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1448.7 925 78.3
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1448.0 953 77.8
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1447.6 958 76.1
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1446.0 921 78.3
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1445.6 920 77.9
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1438.7 911 78.4
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1438.7 843 82.8
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1437.2 1151 66.8
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1436.8 928 76.6
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1434.1 916 79.9
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1431.0 916 76.3
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1429.1 947 76.3
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1427.9 917 77.0
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1425.6 962 76.1
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1421.0 908 77.5
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1406.3 927 77.1
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1400.6 824 82.4
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1399.8 911 76.4
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1397.9 950 73.8
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1390.9 909 75.7
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1388.6 922 75.5
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1382.9 923 75.3
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1382.1 913 75.0
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1379.0 938 74.2
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1378.6 937 74.2
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1378.6 937 74.2
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1377.5 932 74.0
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1373.2 932 71.7
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1362.1 924 73.8
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1360.5 957 73.7
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1360.1 904 73.8
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1354.7 927 73.9
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1354.0 920 74.1
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1352.0 967 72.6
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1349.7 964 73.0
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1342.8 902 71.8
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1339.7 904 73.3
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1338.6 924 71.9
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1337.4 874 74.8
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1336.2 908 74.0
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1300.8 884 70.9
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1285.8 921 70.4
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1266.9 888 68.2
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1257.3 779 80.6
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1251.1 786 79.5
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1242.6 719 84.1
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1196.8 892 66.0
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1176.0 776 73.2
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1136.7 943 63.8
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1135.9 683 81.7
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1104.4 937 60.3
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 0.0e+00 1079.7 941 58.1
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 0.0e+00 1079.3 917 61.8
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 2.2e-310 1068.9 892 58.9
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 1.2e-305 1053.1 721 74.9
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 9.5e-290 1000.3 660 76.4
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 3.9e-275 951.8 788 59.6
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 2.8e-265 919.1 667 71.7
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 2.7e-260 902.5 590 77.1
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 3.8e-246 855.5 526 77.9
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 8.5e-230 801.2 495 78.8
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 3.5e-223 779.2 570 69.1
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.5e-202 710.7 471 73.7
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 2.8e-196 689.9 395 83.3
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 3.0e-182 643.3 386 81.1
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 3.0e-174 616.7 408 78.4
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 1.1e-173 614.8 998 38.0
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 3.7e-140 503.4 409 59.7
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 4.5e-138 496.5 417 60.4
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 2.2e-137 494.2 824 38.5
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 6.7e-118 429.5 223 91.5
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 2.0e-117 427.9 402 57.5
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 2.6e-114 417.5 252 78.6
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 2.1e-103 381.3 279 66.3
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 1.4e-102 378.6 1052 27.6
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 7.5e-101 372.9 858 31.7
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 1.7e-92 345.1 266 62.4
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 1.7e-92 345.1 266 62.4
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 2.5e-88 331.3 365 45.5
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 1.4e-86 325.5 221 70.6
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 2.7e-82 311.2 246 65.9
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 1.0e-57 229.6 148 73.0
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 5.8e-53 213.8 174 54.0
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 3.0e-49 201.4 162 55.6
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 3.0e-49 201.4 162 55.6
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 2.4e-46 191.8 152 56.6
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.4e-43 181.8 118 71.2
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 2.1e-42 178.7 103 83.5
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 1.7e-41 175.6 173 50.3
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 6.2e-39 167.2 99 80.8
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 2.2e-36 158.7 131 63.4
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.4e-35 156.0 76 92.1
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 2.4e-35 155.2 216 45.8
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.2e-35 154.5 76 90.8
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 5.4e-35 154.1 75 93.3
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.7e-34 151.8 76 89.5
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 1.3e-33 149.4 111 64.9
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 3.9e-33 147.9 78 85.9
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 5.1e-33 147.5 74 90.5
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 3.3e-32 144.8 141 47.5
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 4.0e-30 137.9 88 77.3
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 5.8e-29 134.0 93 69.9
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 2.7e-26 125.2 78 79.5
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 3.0e-25 121.7 129 49.6
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 1.1e-24 119.8 99 53.5
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 1.3e-23 116.3 90 60.0
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.6e-23 115.9 65 81.5
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 7.6e-21 107.1 130 48.5
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 1.8e-17 95.9 101 44.6
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 4.8e-15 87.8 263 25.9
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 4.8e-15 87.8 82 56.1
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 1.4e-14 86.3 56 71.4
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 1.0e-09 70.1 46 63.0
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 7.4e-08 63.9 48 58.3
HanXRQChr15g0465621 Helianthus annuus HOM05D003791 ORTHO05D019539 2.8e-07 62.0 81 45.7
CSS0019611 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D019539 1.1e-06 60.1 74 59.5
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 9.1e-06 57.0 42 59.5


User provided reference genes

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