Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 3.6e-250 867.8 456 100.0
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 1.2e-202 709.9 446 80.5
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 3.3e-179 632.1 445 73.7
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 1.1e-177 627.1 463 72.4
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 9.0e-177 624.0 540 64.4
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 7.6e-176 620.9 449 74.8
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 1.0e-175 620.5 445 71.2
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 2.9e-175 619.0 442 71.9
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 4.9e-175 618.2 426 76.1
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 3.2e-174 615.5 426 74.9
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 1.2e-173 613.6 447 71.1
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 1.3e-172 610.1 449 69.7
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 9.7e-171 604.0 447 68.9
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 1.3e-170 603.6 450 70.0
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 6.3e-170 601.3 449 71.3
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.2e-168 597.0 451 71.0
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 2.0e-168 596.3 444 70.9
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 3.4e-168 595.5 443 68.4
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 3.4e-168 595.5 451 71.4
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 4.5e-168 595.1 441 70.5
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.0e-167 594.0 453 70.4
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 1.0e-167 594.0 445 69.4
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.7e-167 593.2 451 71.8
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 5.0e-167 591.7 446 67.0
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 3.2e-166 589.0 444 70.7
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 4.2e-166 588.6 433 70.9
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 4.2e-166 588.6 444 71.2
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 5.5e-166 588.2 439 68.8
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 9.3e-166 587.4 454 70.0
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 2.7e-165 585.9 443 68.4
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 3.6e-165 585.5 465 65.2
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 3.6e-165 585.5 465 65.2
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.6e-165 585.5 443 69.3
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 4.6e-165 585.1 453 67.8
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 6.1e-165 584.7 447 67.8
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.3e-164 582.8 443 69.1
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.9e-164 582.0 446 67.5
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 7.4e-163 577.8 445 69.2
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.3e-162 577.0 450 70.0
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 1.3e-162 577.0 452 69.5
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 2.8e-162 575.9 450 66.0
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.8e-162 575.9 450 70.0
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 8.2e-162 574.3 446 67.3
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 8.2e-162 574.3 448 66.7
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 1.1e-161 573.9 448 69.0
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 3.1e-161 572.4 449 65.9
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 9.1e-161 570.9 439 66.5
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 1.2e-160 570.5 442 68.1
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 5.9e-160 568.2 449 66.1
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 5.9e-160 568.2 437 68.0
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 1.3e-159 567.0 450 67.1
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 1.7e-159 566.6 443 67.9
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 5.0e-159 565.1 443 67.7
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 8.5e-159 564.3 446 65.7
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 1.4e-158 563.5 439 66.3
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 1.4e-158 563.5 450 66.4
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 1.9e-158 563.1 501 61.5
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 2.5e-158 562.8 442 68.1
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 2.1e-157 559.7 460 66.5
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 2.2e-154 549.7 443 65.9
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 6.3e-154 548.1 449 64.4
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 1.4e-153 547.0 441 65.5
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 3.1e-153 545.8 444 65.5
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 4.1e-153 545.4 462 64.5
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 5.3e-153 545.0 443 63.7
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 7.7e-152 541.2 403 70.7
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 1.0e-151 540.8 448 63.4
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 1.2e-149 533.9 445 65.6
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 2.1e-149 533.1 439 63.6
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 7.9e-149 531.2 444 63.3
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 3.3e-147 525.8 444 62.8
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 4.4e-147 525.4 446 62.8
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 7.4e-147 524.6 440 63.9
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 9.7e-147 524.2 446 62.3
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 9.7e-147 524.2 445 63.6
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 1.8e-145 520.0 438 63.7
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 2.4e-145 519.6 435 65.1
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 3.1e-145 519.2 440 62.7
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 1.2e-144 517.3 436 64.4
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 2.6e-144 516.2 458 60.3
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 3.5e-144 515.8 435 63.9
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 4.5e-144 515.4 434 62.2
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 1.7e-143 513.5 436 64.2
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 1.7e-143 513.5 438 63.2
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 2.2e-143 513.1 411 66.9
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 2.7e-141 506.1 404 66.8
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 5.3e-137 491.9 448 59.6
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 2.2e-135 486.5 463 59.8
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 1.9e-134 483.4 349 74.5
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 2.5e-134 483.0 441 61.9
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 8.0e-133 478.0 438 57.8
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 4.8e-130 468.8 452 57.1
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 1.3e-127 460.7 451 55.9
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 2.8e-125 453.0 453 55.6
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 5.7e-123 445.3 355 66.8
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 1.1e-121 441.0 427 57.6
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 1.6e-120 437.2 442 55.7
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 3.5e-120 436.0 262 81.7
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 2.9e-119 433.0 430 54.0
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 1.5e-118 430.6 265 80.8
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 1.0e-116 424.5 248 84.7
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 1.7e-114 417.2 252 81.7
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 1.8e-113 413.7 451 55.7
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 3.5e-112 409.5 433 49.7
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 3.5e-112 409.5 325 64.9
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 1.3e-111 407.5 425 54.8
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 2.9e-106 389.8 406 52.0
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 7.8e-104 381.7 227 83.7
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 8.1e-101 371.7 423 51.5
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 1.5e-94 350.9 192 92.7
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 5.2e-92 342.4 483 42.7
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.1e-89 334.7 320 61.9
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 1.2e-85 321.2 324 59.3
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 4.0e-84 316.2 367 49.3
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 2.0e-83 313.9 284 62.3
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 3.8e-82 309.7 320 57.5
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 2.5e-78 297.0 278 60.4
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 6.9e-76 288.9 285 54.7
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 1.8e-68 264.2 260 54.6
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 2.5e-62 243.8 250 56.0
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 3.7e-61 240.0 211 61.6
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 5.7e-54 216.1 210 55.7
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 5.7e-54 216.1 251 45.8
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 2.2e-53 214.2 398 38.2
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 9.0e-52 208.8 260 46.2
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 1.9e-49 201.1 136 69.9
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 2.5e-46 190.7 213 53.5
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 5.7e-46 189.5 250 43.2
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 2.6e-43 180.6 106 84.0
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 3.2e-41 173.7 86 94.2
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 2.3e-39 167.5 98 83.7
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 1.6e-32 144.8 74 91.9
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 1.7e-29 134.8 86 75.6
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 3.1e-28 130.6 88 69.3
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 5.3e-28 129.8 87 67.8
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 8.5e-26 122.5 259 31.3
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 3.1e-20 104.0 104 54.8
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 2.9e-18 97.4 188 37.8
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 6.5e-18 96.3 67 68.7
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 8.0e-16 89.4 69 66.7
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 1.7e-13 81.6 68 57.4
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.8e-12 78.2 188 33.0
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 2.7e-11 74.3 59 61.0
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 3.5e-11 73.9 81 51.9
BcaB01g02418 Brassica carinata HOM05D005149 ORTHO05D006251 3.4e-06 57.4 72 43.1


User provided reference genes

Program Settings