Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N00343 Erythranthe guttata HOM05D004922 ORTHO05D005990 3.9e-44 181.0 89 100.0
EL10Ac4g08876 Beta vulgaris HOM05D004922 ORTHO05D005990 2.2e-42 175.3 89 95.5
Actinidia35950 Actinidia chinensis HOM05D004922 ORTHO05D005990 3.7e-42 174.5 89 95.5
SalBow3G3780 Salvia bowleyana HOM05D004922 ORTHO05D005990 3.7e-42 174.5 89 95.5
CSS0022478 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 8.2e-42 173.3 89 94.4
CSS0038803 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 8.2e-42 173.3 89 94.4
Nn7g37520 Nelumbo nucifera HOM05D004922 ORTHO05D005990 8.2e-42 173.3 89 94.4
CiPaw.03G151500 Carya illinoinensis HOM05D004922 ORTHO05D005990 1.8e-41 172.2 89 93.3
Solyc09g091500.3 Solanum lycopersicum HOM05D004922 ORTHO05D005990 1.8e-41 172.2 89 94.4
Sopen09g034430 Solanum pennellii HOM05D004922 ORTHO05D005990 1.8e-41 172.2 89 94.4
PGSC0003DMG400029651 Solanum tuberosum HOM05D004922 ORTHO05D005990 1.8e-41 172.2 89 94.4
Ah.06g191400 Amaranthus hybridus HOM05D004922 ORTHO05D005990 2.4e-41 171.8 89 93.3
CAN.G500.78 Capsicum annuum HOM05D004922 ORTHO05D005990 2.4e-41 171.8 88 94.3
Nitab4.5_0003904g0020 Nicotiana tabacum HOM05D004922 ORTHO05D005990 3.1e-41 171.4 89 92.1
Sc05g0002390 Simmondsia chinensis HOM05D004922 ORTHO05D005990 3.1e-41 171.4 89 92.1
Haze_24774 Corylus avellana HOM05D004922 ORTHO05D005990 4.1e-41 171.0 89 92.1
Peaxi162Scf00122g00811 Petunia axillaris HOM05D004922 ORTHO05D005990 5.3e-41 170.6 86 95.3
PGR044G2430 Punica granatum HOM05D004922 ORTHO05D005990 5.3e-41 170.6 87 94.3
Phvul.002G196500 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 7.0e-41 170.2 87 94.3
Cc01_g17260 Coffea canephora HOM05D004922 ORTHO05D005990 9.1e-41 169.9 87 94.3
Eucgr.H03678 Eucalyptus grandis HOM05D004922 ORTHO05D005990 1.2e-40 169.5 87 94.3
Lalb_Chr13g0291421 Lupinus albus HOM05D004922 ORTHO05D005990 1.2e-40 169.5 87 93.1
MD05G1178700 Malus domestica HOM05D004922 ORTHO05D005990 1.2e-40 169.5 89 91.0
CDE02G4734 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 1.5e-40 169.1 87 94.3
Gohir.D07G162000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.5e-40 169.1 87 94.3
RcHm_v2.0_Chr2g0121221 Rosa chinensis HOM05D004922 ORTHO05D005990 1.5e-40 169.1 87 93.1
THA.LOC104818942 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 1.5e-40 169.1 87 93.1
THA.LOC104827350 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 1.5e-40 169.1 87 93.1
Atru.chr8.785 Acer truncatum HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 93.1
arahy.Tifrunner.gnm1.ann1.AXK6HV Arachis hypogaea HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 93.1
arahy.Tifrunner.gnm1.ann1.N94L43 Arachis hypogaea HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 93.1
Ca_18278_v3 Cicer arietinum L. HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 93.1
COL.COLO4_37469 Corchorus olitorius HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 93.1
Dinv04668 Davidia involucrata HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 93.1
Duzib138G1451 Durio zibethinus HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 93.1
Gohir.A07G155600 Gossypium hirsutum HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 93.1
Gohir.A11G136000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 93.1
Gohir.D11G142400 Gossypium hirsutum HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 93.1
Gorai.007G152700 Gossypium raimondii HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 93.1
Hma1.2p1_1061F.1_g253320 Hydrangea macrophylla HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 93.1
Manes.12G042100 Manihot esculenta HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 93.1
Manes.13G044200 Manihot esculenta HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 93.1
Medtr4g094600 Medicago truncatula HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 93.1
Psat7g092040 Pisum sativum HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 93.1
Potri.001G277900 Populus trichocarpa HOM05D004922 ORTHO05D005990 2.0e-40 168.7 89 91.0
Potri.009G072500 Populus trichocarpa HOM05D004922 ORTHO05D005990 2.0e-40 168.7 89 91.0
Sabra16G0171900 Salix brachista HOM05D004922 ORTHO05D005990 2.0e-40 168.7 89 91.0
Sed0006654 Sechium edule HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 93.1
Thecc.01G228800 Theobroma cacao HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 93.1
TPR.G4933 Trifolium pratense HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 93.1
TWI09G0408 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 93.1
TWI59G0402 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 93.1
TAR365G0710 Trochodendron aralioides HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 93.1
TAR636G3017 Trochodendron aralioides HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 93.1
GSVIVG01029076001 Vitis vinifera HOM05D004922 ORTHO05D005990 2.0e-40 168.7 87 94.3
ClCG07G001790 Citrullus lanatus HOM05D004922 ORTHO05D005990 2.6e-40 168.3 87 92.0
QL09p007931 Quercus lobata HOM05D004922 ORTHO05D005990 2.6e-40 168.3 86 93.0
QL09p044611 Quercus lobata HOM05D004922 ORTHO05D005990 2.6e-40 168.3 86 93.0
Sed0024440 Sechium edule HOM05D004922 ORTHO05D005990 2.6e-40 168.3 87 92.0
TPR.G1594 Trifolium pratense HOM05D004922 ORTHO05D005990 2.6e-40 168.3 87 92.0
Phvul.001G007400 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 3.5e-40 167.9 87 92.0
Dinv19219 Davidia involucrata HOM05D004922 ORTHO05D005990 4.5e-40 167.5 87 92.0
Duzib133G0821 Durio zibethinus HOM05D004922 ORTHO05D005990 4.5e-40 167.5 87 92.0
Thhalv10005202m.g Eutrema salsugineum HOM05D004922 ORTHO05D005990 4.5e-40 167.5 86 90.7
Glyma.05G127900 Glycine max HOM05D004922 ORTHO05D005990 4.5e-40 167.5 87 92.0
Gorai.001G185300 Gossypium raimondii HOM05D004922 ORTHO05D005990 4.5e-40 167.5 87 92.0
Lalb_Chr07g0188871 Lupinus albus HOM05D004922 ORTHO05D005990 4.5e-40 167.5 87 92.0
PSO210G2196 Papaver somniferum HOM05D004922 ORTHO05D005990 4.5e-40 167.5 87 92.0
PSO591G0020 Papaver somniferum HOM05D004922 ORTHO05D005990 4.5e-40 167.5 87 92.0
PSO832G2289 Papaver somniferum HOM05D004922 ORTHO05D005990 4.5e-40 167.5 87 92.0
Sp2g19260 Schrenkiella parvula HOM05D004922 ORTHO05D005990 4.5e-40 167.5 86 90.7
Aqoxy1G00374 Aquilegia oxysepala HOM05D004922 ORTHO05D005990 5.9e-40 167.2 87 92.0
CANSAT01G0689 Cannabis sativa HOM05D004922 ORTHO05D005990 5.9e-40 167.2 87 92.0
CANSAT01G1757 Cannabis sativa HOM05D004922 ORTHO05D005990 5.9e-40 167.2 87 92.0
ECA236G1627 Erigeron canadensis HOM05D004922 ORTHO05D005990 7.7e-40 166.8 87 92.0
Lj4g0004779 Lotus japonicus HOM05D004922 ORTHO05D005990 7.7e-40 166.8 87 92.0
MD10G1167200 Malus domestica HOM05D004922 ORTHO05D005990 7.7e-40 166.8 89 89.9
MELO3C018062.2 Cucumis melo HOM05D004922 ORTHO05D005990 1.0e-39 166.4 87 92.0
CsaV3_3G028790 Cucumis sativus L. HOM05D004922 ORTHO05D005990 1.0e-39 166.4 87 92.0
Migut.D00519 Erythranthe guttata HOM05D004922 ORTHO05D005990 1.0e-39 166.4 87 90.8
Prupe.8G205100 Prunus persica HOM05D004922 ORTHO05D005990 1.0e-39 166.4 87 92.0
CARHR182850 Cardamine hirsuta HOM05D004922 ORTHO05D005990 1.3e-39 166.0 86 89.5
HPP92_027867 Vanilla planifolia HOM05D004922 ORTHO05D005990 1.3e-39 166.0 84 95.2
Carub.0008s0859 Capsella rubella HOM05D004922 ORTHO05D005990 1.7e-39 165.6 84 92.9
Ciclev10022785m.g Citrus clementina HOM05D004922 ORTHO05D005990 1.7e-39 165.6 87 90.8
HanXRQChr10g0287281 Helianthus annuus HOM05D004922 ORTHO05D005990 1.7e-39 165.6 87 90.8
AT5G48870 Arabidopsis thaliana HOM05D004922 ORTHO05D005990 2.2e-39 165.2 84 91.7
CSS0043203 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 2.9e-39 164.9 87 90.8
FvH4_1g24390 Fragaria vesca HOM05D004922 ORTHO05D005990 2.9e-39 164.9 87 90.8
FAN19G2048 Fragaria x ananassa HOM05D004922 ORTHO05D005990 2.9e-39 164.9 87 90.8
FAN23G2197 Fragaria x ananassa HOM05D004922 ORTHO05D005990 2.9e-39 164.9 87 90.8
FAN28G0422 Fragaria x ananassa HOM05D004922 ORTHO05D005990 2.9e-39 164.9 87 90.8
HanXRQChr04g0110651 Helianthus annuus HOM05D004922 ORTHO05D005990 2.9e-39 164.9 87 90.8
Lsat_1_v5_gn_8_90161 Lactuca sativa HOM05D004922 ORTHO05D005990 2.9e-39 164.9 87 90.8
Lalb_Chr11g0067741 Lupinus albus HOM05D004922 ORTHO05D005990 6.5e-39 163.7 87 88.5
AL8G22040 Arabidopsis lyrata HOM05D004922 ORTHO05D005990 8.5e-39 163.3 84 90.5
Pp3c1_36020 Physcomitrium patens HOM05D004922 ORTHO05D005990 1.4e-38 162.5 86 89.5
SEGI_22867 Sequoiadendron giganteum HOM05D004922 ORTHO05D005990 1.4e-38 162.5 84 91.7
Nitab4.5_0002920g0030 Nicotiana tabacum HOM05D004922 ORTHO05D005990 2.5e-38 161.8 83 92.8
Os05g0389300 Oryza sativa ssp. japonica HOM05D004922 ORTHO05D005990 2.5e-38 161.8 85 91.8
Zm00001eb287110 Zea mays HOM05D004922 ORTHO05D005990 2.5e-38 161.8 85 91.8
Zm00001eb350780 Zea mays HOM05D004922 ORTHO05D005990 2.5e-38 161.8 85 91.8
BcaB04g19588 Brassica carinata HOM05D004922 ORTHO05D005990 5.5e-38 160.6 86 86.0
unitig_22.g5302 Utricularia gibba HOM05D004922 ORTHO05D005990 7.2e-38 160.2 87 86.2
BolC9t53426H Brassica oleracea HOM05D004922 ORTHO05D005990 9.4e-38 159.8 86 88.4
BcaB07g30046 Brassica carinata HOM05D004922 ORTHO05D005990 1.2e-37 159.5 86 87.2
BcaC03g17679 Brassica carinata HOM05D004922 ORTHO05D005990 1.2e-37 159.5 86 87.2
BcaC04g23758 Brassica carinata HOM05D004922 ORTHO05D005990 1.2e-37 159.5 86 87.2
A02p37760 Brassica napus HOM05D004922 ORTHO05D005990 1.2e-37 159.5 86 87.2
A09p04660 Brassica napus HOM05D004922 ORTHO05D005990 1.2e-37 159.5 86 87.2
C02p56860 Brassica napus HOM05D004922 ORTHO05D005990 1.2e-37 159.5 86 87.2
C09p04970 Brassica napus HOM05D004922 ORTHO05D005990 1.2e-37 159.5 86 87.2
BolC2t11755H Brassica oleracea HOM05D004922 ORTHO05D005990 1.2e-37 159.5 86 87.2
BraA02t08759Z Brassica rapa HOM05D004922 ORTHO05D005990 1.2e-37 159.5 86 87.2
BraA09t36102Z Brassica rapa HOM05D004922 ORTHO05D005990 1.2e-37 159.5 86 87.2
Mapoly0016s0054 Marchantia polymorpha HOM05D004922 ORTHO05D005990 2.1e-37 158.7 84 89.3
SMO118G0467 Selaginella moellendorffii HOM05D004922 ORTHO05D005990 2.1e-37 158.7 84 88.1
AagrBONN_evm.TU.Sc2ySwM_228.5635 Anthoceros agrestis HOM05D004922 ORTHO05D005990 4.7e-37 157.5 84 89.3
DCAR_000537 Daucus carota HOM05D004922 ORTHO05D005990 4.7e-37 157.5 100 79.0
Peaxi162Scf00047g01222 Petunia axillaris HOM05D004922 ORTHO05D005990 3.0e-36 154.8 79 94.9
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 1.5e-35 152.5 77 96.1
Rhsim02G0053600 Rhododendron simsii HOM05D004922 ORTHO05D005990 1.5e-35 152.5 79 93.7
Sabra09G0054700 Salix brachista HOM05D004922 ORTHO05D005990 1.5e-35 152.5 83 88.0
CiPaw.04G107000 Carya illinoinensis HOM05D004922 ORTHO05D005990 3.3e-35 151.4 79 91.1
Glyma.08G082700 Glycine max HOM05D004922 ORTHO05D005990 7.4e-35 150.2 77 93.5
Aa31LG5G17580 Aethionema arabicum HOM05D004922 ORTHO05D005990 1.7e-34 149.1 79 88.6
unitig_8.g3754 Utricularia gibba HOM05D004922 ORTHO05D005990 2.2e-34 148.7 81 85.2
MCO15G079 Micromonas commoda HOM05D004922 ORTHO05D005990 2.8e-34 148.3 84 81.0
Cpa.g.sc3.67 Carica papaya HOM05D004922 ORTHO05D005990 3.7e-34 147.9 76 92.1
FAN26G0321 Fragaria x ananassa HOM05D004922 ORTHO05D005990 8.2e-34 146.7 76 92.1
FAN26G0401 Fragaria x ananassa HOM05D004922 ORTHO05D005990 8.2e-34 146.7 76 92.1
PRCOL_00003510 Prasinoderma coloniale HOM05D004922 ORTHO05D005990 5.9e-32 140.6 85 72.9
HPP92_006337 Vanilla planifolia HOM05D004922 ORTHO05D005990 2.3e-28 128.6 84 78.6
Actinidia39954 Actinidia chinensis HOM05D004922 ORTHO05D005990 8.8e-28 126.7 87 79.3
AUR62033984 Chenopodium quinoa HOM05D004922 ORTHO05D005990 4.4e-27 124.4 63 96.8
SGA_v2.0_scaffold8G04653 Striga asiatica HOM05D004922 ORTHO05D005990 1.3e-26 122.9 107 62.6
CDE05G0301 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 9.1e-25 116.7 58 94.8
CARHR182860 Cardamine hirsuta HOM05D004922 ORTHO05D005990 2.5e-22 108.6 74 75.7
Haze_26353 Corylus avellana HOM05D004922 ORTHO05D005990 9.4e-22 106.7 80 56.2
HanXRQChr11g0331491 Helianthus annuus HOM05D004922 ORTHO05D005990 1.2e-21 106.3 63 85.7
Oeu016707.1 Olea europaea HOM05D004922 ORTHO05D005990 1.6e-21 105.9 53 94.3
ATR0580G296 Amborella trichopoda HOM05D004922 ORTHO05D005990 3.0e-20 101.7 53 90.6
DCAR_023130 Daucus carota HOM05D004922 ORTHO05D005990 5.2e-20 100.9 53 90.6
MD00G1053800 Malus domestica HOM05D004922 ORTHO05D005990 6.8e-20 100.5 53 92.5
MD10G1019300 Malus domestica HOM05D004922 ORTHO05D005990 8.8e-20 100.1 53 88.7
Hund05521 Selenicereus undatus HOM05D004922 ORTHO05D005990 5.7e-19 97.4 50 90.0
Atru.chr10.1425 Acer truncatum HOM05D004922 ORTHO05D005990 8.3e-18 93.6 51 84.3
TPR.G35576 Trifolium pratense HOM05D004922 ORTHO05D005990 5.2e-12 74.3 87 50.6
EL10Ac1g01454 Beta vulgaris HOM05D004922 ORTHO05D005990 1.4e-09 66.2 31 93.5
QL01p002563 Quercus lobata HOM05D004922 ORTHO05D005990 2.0e-08 62.4 34 85.3
Eucgr.H03686 Eucalyptus grandis HOM05D004922 ORTHO05D193424 9.5e-06 53.5 66 51.5


User provided reference genes

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