Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 9.1e-143 510.4 286 100.0
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 2.0e-118 429.5 288 86.5
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 5.9e-118 427.9 286 85.3
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 2.1e-115 419.5 288 83.0
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 9.2e-111 404.1 289 79.6
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 6.0e-110 401.4 289 78.2
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 2.3e-109 399.4 289 78.9
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 1.2e-105 387.1 289 76.8
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 4.9e-104 381.7 308 71.8
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 1.9e-103 379.8 289 74.7
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 3.2e-103 379.0 287 75.3
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 4.1e-103 378.6 289 72.7
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 4.1e-103 378.6 289 75.4
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.2e-102 377.1 287 71.8
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.2e-102 377.1 287 71.8
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 1.2e-102 377.1 306 70.3
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 2.7e-102 375.9 288 72.2
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 6.0e-102 374.8 285 71.6
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 1.0e-101 374.0 288 71.9
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 3.0e-101 372.5 289 74.4
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 5.1e-101 371.7 268 73.5
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 5.1e-101 371.7 288 72.2
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 5.1e-101 371.7 288 71.5
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 6.6e-101 371.3 288 71.5
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 2.5e-100 369.4 289 74.4
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 4.3e-100 368.6 288 71.2
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 5.6e-100 368.2 285 70.2
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 5.6e-100 368.2 286 70.3
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 5.6e-100 368.2 288 70.5
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 7.3e-100 367.9 289 72.3
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 7.3e-100 367.9 288 70.1
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 7.3e-100 367.9 288 70.8
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 2.1e-99 366.3 289 73.4
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 3.6e-99 365.5 289 71.3
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 1.1e-98 364.0 290 70.3
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 1.4e-98 363.6 296 71.6
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 3.1e-98 362.5 285 69.1
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 8.9e-98 360.9 286 71.7
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 2.0e-97 359.8 289 73.7
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 3.4e-97 359.0 288 73.6
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 4.4e-97 358.6 288 73.6
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 7.6e-97 357.8 289 71.6
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 7.6e-97 357.8 289 73.7
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 9.9e-97 357.5 288 72.2
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 2.2e-96 356.3 262 73.3
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 2.2e-96 356.3 289 68.5
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 3.7e-96 355.5 288 71.2
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 3.7e-96 355.5 264 74.6
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 3.7e-96 355.5 287 71.1
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 1.4e-95 353.6 302 66.6
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 2.4e-95 352.8 286 71.7
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 2.4e-95 352.8 289 69.6
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 2.4e-95 352.8 280 71.4
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 3.2e-95 352.4 288 69.4
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 4.1e-95 352.1 288 69.4
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 4.1e-95 352.1 284 71.5
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 5.4e-95 351.7 288 69.1
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 1.2e-94 350.5 286 68.9
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 1.1e-92 344.0 286 68.2
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 1.9e-92 343.2 292 70.5
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 2.5e-92 342.8 286 67.5
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 3.3e-92 342.4 286 68.5
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 4.3e-92 342.0 289 67.8
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 5.6e-92 341.7 291 69.4
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 5.6e-92 341.7 287 69.7
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 9.6e-92 340.9 287 74.2
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 1.2e-91 340.5 269 71.4
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 1.2e-91 340.5 286 66.1
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 1.6e-91 340.1 286 67.1
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 3.6e-91 339.0 258 72.9
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 3.6e-91 339.0 314 64.3
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 4.7e-91 338.6 288 68.4
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 4.7e-91 338.6 291 69.1
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 8.1e-91 337.8 285 66.7
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 8.1e-91 337.8 286 68.5
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 1.4e-90 337.0 286 66.1
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 4.0e-90 335.5 246 74.0
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 4.0e-90 335.5 288 69.8
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 6.8e-90 334.7 251 72.1
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 1.2e-89 334.0 287 67.6
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 2.9e-88 329.3 243 72.4
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 2.9e-88 329.3 243 72.4
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 2.9e-88 329.3 286 68.2
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 3.8e-88 328.9 286 65.7
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 4.9e-88 328.6 243 74.1
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 1.1e-87 327.4 246 73.2
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 1.1e-87 327.4 243 71.6
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 2.4e-87 326.2 243 73.7
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 3.2e-87 325.9 243 71.6
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 3.2e-87 325.9 285 68.1
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 7.1e-87 324.7 271 68.6
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 7.1e-87 324.7 271 68.6
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 7.1e-87 324.7 284 66.2
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 9.3e-87 324.3 243 74.1
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 2.1e-86 323.2 271 68.3
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 2.1e-86 323.2 271 68.3
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 2.1e-86 323.2 243 73.7
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 4.6e-86 322.0 243 73.7
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 1.7e-85 320.1 284 66.9
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 1.7e-85 320.1 284 64.8
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 6.6e-85 318.2 288 65.3
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 1.5e-84 317.0 260 71.2
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 3.3e-84 315.8 289 65.1
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 1.5e-81 307.0 243 70.0
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 6.6e-77 291.6 260 65.8
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 6.6e-77 291.6 246 69.9
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 4.3e-76 288.9 261 67.8
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 4.3e-76 288.9 287 59.2
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 1.1e-74 284.3 211 75.8
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 1.4e-74 283.9 277 61.0
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 1.3e-69 267.3 291 58.1
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 3.0e-69 266.2 292 58.6
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 3.3e-68 262.7 289 58.8
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 9.6e-68 261.2 293 56.7
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 4.5e-65 252.3 153 86.9
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 2.2e-64 250.0 153 86.9
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 5.5e-63 245.4 229 62.4
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 1.4e-58 230.7 205 65.4
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 4.8e-51 205.7 266 46.2
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 2.0e-49 200.3 161 62.1
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 5.0e-48 195.7 181 59.1
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 5.5e-47 192.2 125 80.0
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 6.1e-46 188.7 288 46.2
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 3.9e-45 186.0 186 60.8
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 3.9e-45 186.0 153 68.6
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.2e-41 174.5 153 62.7
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 4.7e-38 162.5 181 53.0
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 6.3e-35 152.1 181 50.8
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 3.1e-34 149.8 181 49.7
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 2.5e-31 140.2 236 39.4
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 3.7e-27 126.3 105 61.9
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 1.4e-26 124.4 67 89.6
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 5.2e-21 105.9 136 53.7
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 5.2e-21 105.9 136 53.7
RcHm_v2.0_Chr4g0427471 Rosa chinensis HOM05D000753 ORTHO05D006719 1.6e-17 94.4 137 52.6
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 2.7e-17 93.6 73 61.6
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 1.0e-16 91.7 105 56.2
PSO591G0416 Papaver somniferum HOM05D005498 ORTHO05D006719 2.8e-14 83.6 73 58.9
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 8.3e-11 72.0 42 76.2
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 5.0e-08 62.8 172 32.0
CBR_g3778 Chara braunii HOM05D005498 ORTHO05D006719 1.2e-06 58.2 47 59.6


User provided reference genes

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