Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 2.9e-174 615.1 319 100.0
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 2.5e-149 532.3 359 78.6
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 7.3e-149 530.8 327 83.8
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 1.9e-141 506.1 327 79.5
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 2.1e-140 502.7 328 79.3
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 8.0e-140 500.7 328 78.0
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.8e-139 499.6 328 77.7
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 1.2e-138 496.9 327 77.7
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 2.6e-138 495.7 345 74.2
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 4.4e-138 495.0 329 76.3
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 1.2e-135 486.9 330 76.4
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 2.1e-135 486.1 362 72.4
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 1.0e-134 483.8 327 75.5
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 2.3e-134 482.6 319 75.2
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 6.6e-134 481.1 327 75.2
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 8.6e-134 480.7 329 76.0
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 1.5e-133 479.9 327 74.3
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 2.5e-133 479.2 331 74.6
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 3.3e-133 478.8 326 74.5
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 4.3e-133 478.4 322 75.2
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 5.6e-133 478.0 330 73.3
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 9.5e-133 477.2 329 75.1
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 9.5e-133 477.2 324 74.4
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.2e-132 476.9 327 73.7
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 1.6e-132 476.5 329 73.6
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 2.1e-132 476.1 329 74.5
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 2.1e-132 476.1 321 74.1
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 4.7e-132 474.9 326 74.2
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 8.1e-132 474.2 322 73.3
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 8.1e-132 474.2 316 76.6
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 2.3e-131 472.6 322 72.7
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 3.1e-131 472.2 327 73.4
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 4.0e-131 471.9 330 72.7
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 4.0e-131 471.9 318 73.9
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 3.4e-130 468.8 293 81.2
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 3.4e-130 468.8 330 71.5
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 3.4e-130 468.8 327 74.6
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 7.6e-130 467.6 329 71.7
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 9.9e-130 467.2 327 71.9
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 1.3e-129 466.8 329 71.7
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 1.3e-129 466.8 322 72.7
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 4.9e-129 464.9 353 68.8
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 4.9e-129 464.9 320 72.8
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 6.4e-129 464.5 329 73.6
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 6.4e-129 464.5 329 73.6
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 6.4e-129 464.5 329 72.0
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.4e-128 463.4 320 72.5
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.4e-128 462.6 329 73.3
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.4e-128 462.6 329 72.9
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 3.2e-128 462.2 320 71.9
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 3.2e-128 462.2 327 74.3
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 4.1e-128 461.8 327 71.9
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 5.4e-128 461.5 327 74.0
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 5.4e-128 461.5 327 70.6
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 7.1e-128 461.1 328 74.7
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 9.2e-128 460.7 329 72.9
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 9.2e-128 460.7 327 74.3
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 3.5e-127 458.8 327 70.3
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 4.6e-127 458.4 327 73.4
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 7.8e-127 457.6 328 69.8
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 1.0e-126 457.2 328 69.8
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 1.3e-126 456.8 319 72.1
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 1.7e-126 456.4 327 73.4
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 5.1e-126 454.9 327 72.5
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 5.1e-126 454.9 316 74.4
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.5e-125 452.6 320 70.6
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 5.6e-125 451.4 319 71.2
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 5.6e-125 451.4 320 70.3
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.6e-124 449.9 320 70.0
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 2.1e-124 449.5 319 70.8
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 2.1e-124 449.5 317 70.7
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 3.6e-124 448.7 321 70.4
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 6.2e-124 448.0 329 69.9
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 2.4e-123 446.0 329 69.0
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 6.8e-123 444.5 276 81.2
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.5e-122 443.4 323 70.0
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 3.4e-122 442.2 327 71.3
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 1.7e-121 439.9 322 71.4
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 8.4e-121 437.6 398 60.1
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 7.8e-119 431.0 330 66.1
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 1.0e-118 430.6 327 66.7
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 1.0e-118 430.6 320 69.7
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 6.6e-118 427.9 332 67.2
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 1.9e-117 426.4 318 67.9
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 2.5e-117 426.0 318 67.9
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 3.3e-117 425.6 322 65.5
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 4.3e-117 425.2 324 66.7
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 9.6e-117 424.1 324 66.0
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 1.6e-116 423.3 323 67.2
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.6e-116 423.3 324 65.7
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 3.6e-116 422.2 323 65.9
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 6.2e-116 421.4 327 65.4
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 2.4e-115 419.5 323 65.6
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 4.0e-115 418.7 323 65.6
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 4.0e-115 418.7 320 66.9
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 1.5e-114 416.8 336 63.7
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 1.5e-114 416.8 320 65.0
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.9e-113 412.5 314 68.5
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 2.9e-113 412.5 320 67.5
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 1.2e-111 407.1 321 65.1
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 6.2e-108 394.8 272 73.2
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 8.1e-108 394.4 323 64.1
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 1.4e-107 393.7 316 64.9
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 4.5e-106 388.7 329 62.0
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 1.9e-104 383.3 321 61.1
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 4.3e-101 372.1 327 60.9
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 3.5e-95 352.4 318 61.3
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 5.1e-94 348.6 325 61.2
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 1.6e-92 343.6 324 59.3
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 1.7e-89 333.6 320 56.6
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 2.2e-89 333.2 309 56.0
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 1.1e-88 330.9 312 58.7
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 2.3e-86 323.2 319 55.8
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 6.7e-86 321.6 276 61.6
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.4e-83 313.9 309 54.4
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 4.1e-83 312.4 195 80.5
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 4.2e-80 302.4 323 49.2
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 6.3e-76 288.5 177 83.1
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 1.4e-72 277.3 318 46.2
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 8.2e-68 261.5 186 71.5
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 4.5e-66 255.8 318 49.1
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 5.5e-64 248.8 193 66.3
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 9.4e-64 248.1 277 46.2
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 1.8e-62 243.8 213 57.7
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 4.1e-59 232.6 260 50.4
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.7e-57 227.3 327 43.1
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 1.9e-56 223.8 158 67.7
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 1.0e-54 218.0 301 39.9
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 4.0e-54 216.1 142 73.2
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 1.2e-53 214.5 179 59.8
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 5.9e-50 202.2 133 75.9
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 4.2e-48 196.1 131 74.0
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.5e-45 187.6 131 73.3
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 5.7e-45 185.7 146 64.4
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 3.1e-43 179.9 139 64.0
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 9.2e-43 178.3 262 39.3
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 5.9e-42 175.6 128 71.9
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 2.9e-41 173.3 174 52.9
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 3.8e-41 172.9 282 37.9
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 8.0e-39 165.2 114 69.3
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 4.0e-38 162.9 97 75.3
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 1.2e-37 161.4 258 36.0
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 3.2e-35 153.3 139 56.8
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 3.9e-33 146.4 196 42.3
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 3.3e-32 143.3 153 48.4
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 3.3e-32 143.3 134 53.0
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 7.3e-32 142.1 137 49.6
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 2.0e-29 134.0 277 33.9
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 2.9e-28 130.2 81 71.6
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 4.9e-28 129.4 127 49.6
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 2.0e-26 124.0 126 49.2
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 3.3e-24 116.7 186 41.4
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 3.6e-23 113.2 117 53.8
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 5.8e-21 105.9 68 77.9
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 1.1e-16 91.7 95 52.6
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 1.1e-16 91.7 95 52.6
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 4.3e-16 89.7 77 58.4
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 2.9e-12 77.0 73 58.9
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 6.4e-12 75.9 117 44.4
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 6.6e-09 65.9 60 56.7
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 5.6e-08 62.8 60 50.0
SalBow2G0531 Salvia bowleyana HOM05D004465 ORTHO05D351996 2.4e-06 57.4 33 78.8


User provided reference genes

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