Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g067760 Medicago truncatula HOM05D000216 ORTHO05D000634 1.8e-44 182.2 90 100.0
Medtr3g062770 Medicago truncatula HOM05D000216 ORTHO05D000634 3.5e-32 141.4 72 95.8
Medtr3g062790 Medicago truncatula HOM05D000216 ORTHO05D000634 3.5e-32 141.4 72 95.8
Medtr4g051130 Medicago truncatula HOM05D000216 ORTHO05D001131 3.5e-32 141.4 72 95.8
Medtr8g016510 Medicago truncatula HOM05D000216 ORTHO05D000634 9.5e-30 133.3 79 83.5
Ca_05612_v3 Cicer arietinum L. HOM05D000216 ORTHO05D000634 8.1e-29 130.2 79 79.7
LjContig00318g0019842 Lotus japonicus HOM05D000216 ORTHO05D000634 1.4e-28 129.4 79 81.0
arahy.Tifrunner.gnm1.ann1.YJD706 Arachis hypogaea HOM05D000216 ORTHO05D000634 1.7e-26 122.5 79 77.2
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 6.4e-26 120.6 64 90.6
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 6.4e-26 120.6 64 90.6
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 6.4e-26 120.6 64 90.6
Sed0024913 Sechium edule HOM05D000216 ORTHO05D000634 6.4e-26 120.6 64 90.6
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 6.4e-26 120.6 64 90.6
Gorai.005G167800 Gossypium raimondii HOM05D000216 ORTHO05D000634 8.3e-26 120.2 64 89.1
LjContig00489g0016986 Lotus japonicus HOM05D000216 ORTHO05D000634 8.3e-26 120.2 64 89.1
Migut.D01343 Erythranthe guttata HOM05D000216 ORTHO05D000634 1.1e-25 119.8 64 89.1
ATR0187G002 Amborella trichopoda HOM05D000216 ORTHO05D000634 1.9e-25 119.0 64 89.1
Potri.013G140850 Populus trichocarpa HOM05D000216 ORTHO05D000634 1.9e-25 119.0 64 89.1
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 1.9e-25 119.0 64 89.1
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 1.9e-25 119.0 64 89.1
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.9e-25 119.0 64 89.1
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.9e-25 119.0 64 89.1
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.9e-25 119.0 64 89.1
PGR111G0082 Punica granatum HOM05D000216 ORTHO05D000634 2.4e-25 118.6 64 87.5
COL.COLO4_37398 Corchorus olitorius HOM05D000216 ORTHO05D000634 3.2e-25 118.2 60 91.7
DCAR_032475 Daucus carota HOM05D000216 ORTHO05D000634 4.1e-25 117.9 69 81.2
Psat0s6357g0040 Pisum sativum HOM05D000216 ORTHO05D001131 7.1e-25 117.1 64 85.9
PSO548G0054 Papaver somniferum HOM05D000216 ORTHO05D000634 9.2e-25 116.7 64 85.9
CAN.G219.18 Capsicum annuum HOM05D000216 ORTHO05D000634 1.2e-24 116.3 64 87.5
QL93p1429_0001 Quercus lobata HOM05D000216 ORTHO05D000634 1.2e-24 116.3 64 85.9
Hund27561 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.2e-24 116.3 64 85.9
Hund27655 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.2e-24 116.3 64 85.9
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.2e-24 116.3 64 85.9
Hund27997 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.2e-24 116.3 64 85.9
Hund28278 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.2e-24 116.3 64 85.9
Hund28351 Selenicereus undatus HOM05D000216 ORTHO05D001131 1.2e-24 116.3 64 85.9
Hund28386 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.2e-24 116.3 64 85.9
Hund28558 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.2e-24 116.3 64 85.9
Hund29353 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.2e-24 116.3 64 85.9
Hund29739 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.2e-24 116.3 64 85.9
ATCG00180 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 2.7e-24 115.2 64 85.9
BolSC37t60766H Brassica oleracea HOM05D000216 ORTHO05D000634 2.7e-24 115.2 64 85.9
BolSC45t60875H Brassica oleracea HOM05D000216 ORTHO05D000634 2.7e-24 115.2 64 85.9
BraSC151t45702Z Brassica rapa HOM05D000216 ORTHO05D000634 2.7e-24 115.2 64 85.9
BraSC58t46407Z Brassica rapa HOM05D000216 ORTHO05D000634 2.7e-24 115.2 64 85.9
BNapus_Darmor_BZH_scaffold_253p00070 Brassica napus HOM05D000216 ORTHO05D000634 3.5e-24 114.8 64 84.4
CARHR281930 Cardamine hirsuta HOM05D000216 ORTHO05D001131 3.5e-24 114.8 64 85.9
AUR62024083 Chenopodium quinoa HOM05D000216 ORTHO05D001131 3.5e-24 114.8 64 84.4
Hma1.2p1_0094F.1_g047102 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 1.0e-23 113.2 64 84.4
Lalb_Chr06g0173041 Lupinus albus HOM05D000216 ORTHO05D000634 3.9e-23 111.3 79 69.6
Psat7g026760 Pisum sativum HOM05D000216 ORTHO05D000634 3.9e-23 111.3 69 75.4
Hund28576 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.1e-23 110.9 64 84.4
FAN07G2613 Fragaria x ananassa HOM05D000216 ORTHO05D000634 1.5e-22 109.4 64 82.8
HanXRQChr00c0823g0577611 Helianthus annuus HOM05D000216 ORTHO05D000634 2.5e-22 108.6 86 65.1
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 2.5e-22 108.6 86 65.1
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 2.5e-22 108.6 86 65.1
HanXRQChr15g0488301 Helianthus annuus HOM05D000216 ORTHO05D000634 2.5e-22 108.6 86 65.1
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 2.5e-22 108.6 86 65.1
Psat5g263640 Pisum sativum HOM05D000216 ORTHO05D000634 2.5e-22 108.6 73 75.3
Lj2A1227T105 Lonicera japonica HOM05D000216 ORTHO05D000634 5.6e-22 107.5 64 78.1
BolSC44t60848H Brassica oleracea HOM05D000216 ORTHO05D000634 7.3e-22 107.1 56 89.3
BolSC45t60939H Brassica oleracea HOM05D000216 ORTHO05D000634 7.3e-22 107.1 56 89.3
ECA054G0005 Erigeron canadensis HOM05D000216 ORTHO05D000634 7.3e-22 107.1 86 64.0
ECA169G0008 Erigeron canadensis HOM05D000216 ORTHO05D000634 7.3e-22 107.1 86 64.0
Lsat_1_v5_gn_1_96161 Lactuca sativa HOM05D000216 ORTHO05D000634 7.3e-22 107.1 86 64.0
Lsat_1_v5_gn_2_41761 Lactuca sativa HOM05D000216 ORTHO05D000634 7.3e-22 107.1 86 64.0
Lsat_1_v5_gn_6_87861 Lactuca sativa HOM05D000216 ORTHO05D000634 7.3e-22 107.1 86 64.0
Lsat_1_v5_gn_8_1820 Lactuca sativa HOM05D000216 ORTHO05D000634 7.3e-22 107.1 86 64.0
CsaV3_UNG208340 Cucumis sativus L. HOM05D000216 ORTHO05D001131 1.6e-21 105.9 59 88.1
Lj2A1237T129 Lonicera japonica HOM05D000216 ORTHO05D000634 2.1e-21 105.5 64 76.6
Lj2C1238G20 Lonicera japonica HOM05D000216 ORTHO05D000634 2.1e-21 105.5 64 76.6
Lj2C1239T55 Lonicera japonica HOM05D000216 ORTHO05D000634 2.1e-21 105.5 64 76.6
HanXRQChr13g0417241 Helianthus annuus HOM05D000216 ORTHO05D001131 1.4e-20 102.8 86 61.6
Sed0020606 Sechium edule HOM05D000216 ORTHO05D000634 3.1e-20 101.7 65 78.5
Lsat_1_v5_gn_8_77281 Lactuca sativa HOM05D000216 ORTHO05D000634 2.0e-19 99.0 86 59.3
EL10Ac9g21013 Beta vulgaris HOM05D000216 ORTHO05D000634 3.4e-19 98.2 68 72.1
Nitab4.5_0003222g0030 Nicotiana tabacum HOM05D000216 ORTHO05D000634 4.4e-19 97.8 55 87.3
Sed0025165 Sechium edule HOM05D000216 ORTHO05D000634 1.3e-18 96.3 63 76.2
arahy.Tifrunner.gnm1.ann1.Q9IK60 Arachis hypogaea HOM05D000216 ORTHO05D014073 1.7e-18 95.9 64 71.9
Gorai.001G177800 Gossypium raimondii HOM05D000216 ORTHO05D000634 2.2e-18 95.5 52 84.6
Nitab4.5_0003222g0020 Nicotiana tabacum HOM05D000216 ORTHO05D000634 4.9e-18 94.4 55 85.5
Gohir.D07G155233 Gossypium hirsutum HOM05D000216 ORTHO05D000634 8.4e-18 93.6 52 82.7
CAN.G802.5 Capsicum annuum HOM05D001109 ORTHO05D001051 1.1e-17 93.2 50 86.0
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 4.2e-17 91.3 64 67.2
Nitab4.5_0002734g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 9.2e-17 90.1 54 83.3
Solyc07g021210.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 6.0e-16 87.4 57 73.7
Lalb_Chr09g0335381 Lupinus albus HOM05D000216 ORTHO05D000634 1.7e-15 85.9 46 89.1
Lalb_Chr24g0400941 Lupinus albus HOM05D000216 ORTHO05D000634 1.7e-15 85.9 46 89.1
AL2G20940 Arabidopsis lyrata HOM05D000216 ORTHO05D000634 5.1e-15 84.3 46 87.0
BraSC58t46478Z Brassica rapa HOM05D000216 ORTHO05D000634 5.1e-15 84.3 46 87.0
unitig_91.g26497 Utricularia gibba HOM05D000216 ORTHO05D000634 5.1e-15 84.3 46 84.8
Psat7g064880 Pisum sativum HOM05D000216 ORTHO05D000634 9.6e-14 80.1 46 80.4
Psat0s4841g0120 Pisum sativum HOM05D000216 ORTHO05D000634 1.2e-13 79.7 58 69.0
Lalb_Chr07g0192751 Lupinus albus HOM05D000216 ORTHO05D000634 2.1e-13 79.0 46 80.4
Lju2566C0G7 Lonicera japonica HOM05D000216 ORTHO05D000634 3.6e-13 78.2 55 69.1
Psat0s1150g0080 Pisum sativum HOM05D000216 ORTHO05D000634 1.4e-12 76.3 43 81.4
Lalb_Chr06g0173131 Lupinus albus HOM05D000216 ORTHO05D000634 2.4e-12 75.5 46 73.9
SGA_v2.0_scaffold10G05379 Striga asiatica HOM05D000216 ORTHO05D000634 4.0e-12 74.7 47 70.2
SEGI_00207 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 5.3e-12 74.3 64 53.1
HanXRQChr00c0994g0578181 Helianthus annuus HOM05D000216 ORTHO05D000634 6.9e-12 73.9 86 50.0
Lj2C1224G59 Lonicera japonica HOM05D000216 ORTHO05D000634 2.0e-11 72.4 46 71.7
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 2.0e-11 72.4 46 71.7
Psat6g181520 Pisum sativum HOM05D000216 ORTHO05D000634 2.6e-11 72.0 46 73.9
Medtr4g009210 Medicago truncatula HOM05D000216 ORTHO05D000634 5.8e-11 70.9 46 78.3
Nitab4.5_0000172g0250 Nicotiana tabacum HOM05D000216 ORTHO05D001131 1.2e-08 63.2 53 60.4
SMO086G0006 Selaginella moellendorffii HOM05D000216 ORTHO05D000634 2.7e-08 62.0 64 46.9
SEGI_19449 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 3.9e-07 58.2 46 52.2
BraSC140t45607Z Brassica rapa HOM05D000216 ORTHO05D000634 6.6e-07 57.4 32 84.4


User provided reference genes

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