Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1963.7 1013 100.0
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 0.0e+00 1250.3 1006 65.3
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 0.0e+00 1225.3 1023 63.5
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1167.5 955 60.7
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1163.7 995 61.5
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1158.7 984 61.4
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1156.7 993 60.8
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1154.0 952 60.5
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1153.3 988 60.4
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1152.9 985 61.5
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1151.7 950 61.4
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1151.7 994 61.5
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1151.0 980 61.0
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1151.0 957 62.0
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1149.8 988 61.2
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1149.8 983 61.4
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1149.0 955 61.2
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1146.3 947 60.8
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1145.6 990 60.3
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1145.2 985 59.9
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1144.8 986 60.9
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1144.8 986 59.6
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1144.8 982 60.2
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1144.4 961 60.1
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1143.6 995 60.2
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1142.9 987 60.7
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1142.5 987 61.0
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1141.3 951 60.0
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1140.9 985 60.8
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1140.6 956 59.3
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1140.2 987 60.5
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1139.8 984 61.2
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1139.4 987 60.4
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1138.3 984 61.0
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1137.5 991 60.2
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1137.5 959 59.6
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1137.1 956 59.3
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1136.7 988 60.2
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1136.7 988 60.7
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1136.3 991 60.0
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1135.9 985 60.6
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1135.2 986 60.2
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1134.8 984 60.4
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1134.4 953 59.2
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1134.0 978 59.8
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1134.0 979 59.6
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1133.2 957 60.3
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1133.2 947 61.1
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1133.2 1001 60.5
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1132.9 953 59.8
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1132.5 934 62.8
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1131.7 984 59.9
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1130.2 985 59.7
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1129.8 978 59.0
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1129.0 980 60.0
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1128.6 923 63.1
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1128.6 955 59.2
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1127.9 987 60.4
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1127.1 947 60.1
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1125.2 955 59.2
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1124.8 955 59.1
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1124.8 993 60.0
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1124.8 985 59.0
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1123.6 995 59.8
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1123.2 996 59.8
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1123.2 989 60.2
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1122.5 986 59.7
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1122.1 960 58.5
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1121.7 960 59.2
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1121.7 987 60.0
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1120.1 985 58.7
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1119.8 985 60.2
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1117.8 987 59.5
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1116.7 952 58.7
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1116.3 1007 58.2
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1112.8 987 57.3
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1111.3 1005 58.9
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1111.3 985 59.4
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1107.0 985 58.7
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1105.5 984 58.0
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1104.4 948 58.2
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1100.5 985 58.2
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1100.1 937 60.3
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1099.3 989 58.9
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1099.0 988 59.1
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1098.6 956 56.9
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1098.6 986 58.7
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1096.3 963 57.9
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1094.7 986 58.8
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1094.7 961 57.8
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1094.3 962 57.1
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1094.3 980 58.1
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1093.2 989 57.8
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1092.8 1000 58.2
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1091.3 958 58.5
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1090.9 962 57.2
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1090.5 1001 58.0
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1090.5 1001 58.0
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1088.6 987 58.6
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1084.3 986 57.7
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1078.9 985 56.6
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1077.8 1017 55.9
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1077.4 984 57.9
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 6.4e-308 1060.8 960 56.7
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 1.2e-306 1056.6 1203 51.3
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 3.5e-306 1055.0 945 56.1
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 1.9e-304 1049.3 928 58.6
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 9.6e-304 1047.0 900 60.4
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 2.6e-301 1038.9 955 56.5
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 5.8e-301 1037.7 952 55.7
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 1.6e-298 1029.6 842 60.7
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 2.3e-297 1025.8 796 63.4
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 1.2e-290 1003.4 796 65.1
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 2.1e-290 1002.7 864 59.0
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 9.6e-288 993.8 957 54.0
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 1.2e-282 976.9 794 61.6
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 3.0e-273 945.7 796 58.8
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 5.1e-265 918.3 729 62.1
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 1.3e-260 903.7 972 49.0
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 1.0e-244 850.9 984 49.8
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 2.7e-234 816.2 712 57.9
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 6.1e-234 815.1 674 62.9
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 3.1e-230 802.7 701 58.8
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 7.8e-221 771.5 646 58.7
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 4.0e-217 759.2 604 64.4
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 3.6e-202 709.5 443 85.6
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 1.6e-186 657.5 1076 38.3
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.3e-180 637.9 575 55.5
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 1.6e-170 604.4 541 56.0
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 8.2e-162 575.5 617 50.6
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 5.1e-156 556.2 412 66.3
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.3e-146 525.0 520 52.7
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 5.9e-144 516.2 380 66.6
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 3.8e-135 486.9 840 36.7
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 3.8e-135 486.9 384 60.4
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 2.3e-116 424.5 876 34.5
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 8.8e-116 422.5 427 52.9
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 1.1e-113 415.6 1059 29.2
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 1.6e-96 358.6 537 40.6
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 4.7e-85 320.5 279 60.9
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 3.0e-79 301.2 270 57.8
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 2.1e-77 295.0 240 62.9
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 2.1e-77 295.0 253 60.9
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 2.1e-77 295.0 253 60.9
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 2.2e-74 285.0 409 40.6
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 1.8e-63 248.8 267 50.2
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 1.9e-62 245.4 268 49.6
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 6.0e-56 223.8 173 57.2
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 4.5e-43 181.0 141 58.9
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 3.6e-40 171.4 159 57.9
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 3.6e-40 171.4 159 57.9
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 2.8e-37 161.8 138 57.2
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 9.1e-36 156.8 139 59.0
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 2.2e-34 152.1 99 72.7
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.3e-29 136.3 270 35.9
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.8e-29 135.2 76 77.6
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 4.8e-29 134.4 573 24.1
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 8.2e-29 133.7 76 76.3
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.1e-28 133.3 75 78.7
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.8e-28 132.5 76 76.3
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 3.1e-28 131.7 105 62.9
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 5.3e-28 131.0 172 43.6
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 3.4e-27 128.3 73 78.1
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.5e-27 127.9 75 74.7
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 7.2e-25 120.6 114 57.0
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.0e-23 116.7 117 49.6
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.6e-22 112.1 65 78.5
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 3.3e-22 111.7 113 51.3
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 3.7e-21 108.2 118 50.8
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 1.6e-19 102.8 125 42.4
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 4.2e-17 94.7 88 54.5
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 1.3e-13 83.2 69 55.1
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 6.3e-13 80.9 106 37.7
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 1.6e-11 76.3 101 39.6
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 5.9e-11 74.3 48 68.8
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 9.4e-09 67.0 93 37.6
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 2.7e-08 65.5 42 61.9
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 3.6e-08 65.1 42 73.8
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 6.1e-08 64.3 69 44.9
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 2.3e-07 62.4 81 40.7


User provided reference genes

Program Settings