Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 5.4e-184 647.5 326 100.0
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 2.9e-113 412.5 308 68.8
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 2.7e-98 362.8 323 55.7
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 2.7e-90 336.3 323 51.1
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 3.5e-90 335.9 283 60.8
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 2.3e-89 333.2 330 51.8
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 3.9e-89 332.4 333 52.6
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 3.9e-89 332.4 330 51.8
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 1.1e-88 330.9 321 53.3
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 1.5e-88 330.5 316 52.8
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 1.9e-88 330.1 325 52.3
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 1.6e-87 327.0 322 50.0
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 4.7e-87 325.5 317 52.1
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 4.7e-87 325.5 325 50.8
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 4.7e-87 325.5 326 51.5
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 1.4e-86 323.9 322 51.6
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 1.8e-86 323.6 318 50.6
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 3.1e-86 322.8 323 49.8
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 6.8e-86 321.6 329 49.8
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 1.2e-85 320.9 311 51.8
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 1.5e-85 320.5 327 48.9
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 1.5e-85 320.5 322 51.2
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.5e-85 320.5 322 50.6
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.5e-85 320.5 322 52.2
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 2.0e-85 320.1 326 51.5
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 2.0e-85 320.1 318 52.5
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 2.0e-85 320.1 318 51.6
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 2.6e-85 319.7 328 49.7
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 4.4e-85 318.9 328 51.8
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 5.8e-85 318.5 319 49.5
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 7.6e-85 318.2 325 51.7
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 1.7e-84 317.0 326 50.0
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.2e-84 316.6 321 49.8
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 2.2e-84 316.6 322 49.4
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 2.9e-84 316.2 318 50.9
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 4.9e-84 315.5 324 51.9
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 4.9e-84 315.5 321 50.5
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 6.4e-84 315.1 322 50.3
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 8.4e-84 314.7 321 50.5
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 8.4e-84 314.7 318 50.6
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 1.1e-83 314.3 318 50.3
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 1.1e-83 314.3 324 48.8
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 1.1e-83 314.3 320 50.6
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 1.4e-83 313.9 323 49.5
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 1.4e-83 313.9 322 50.9
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.9e-83 313.5 324 50.9
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.9e-83 313.5 317 51.1
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 3.2e-83 312.8 325 49.8
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 3.2e-83 312.8 318 50.6
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 3.2e-83 312.8 320 50.6
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 4.1e-83 312.4 318 50.3
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 4.1e-83 312.4 323 49.2
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 5.4e-83 312.0 318 50.9
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 7.1e-83 311.6 314 51.0
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 7.1e-83 311.6 324 50.0
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 7.1e-83 311.6 313 51.4
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 7.1e-83 311.6 322 50.9
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 9.2e-83 311.2 320 48.4
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 9.2e-83 311.2 320 48.1
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 9.2e-83 311.2 324 50.9
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 9.2e-83 311.2 324 50.9
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 9.2e-83 311.2 320 50.3
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.2e-82 310.8 320 49.7
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 1.2e-82 310.8 340 47.4
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 1.2e-82 310.8 322 49.1
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 1.6e-82 310.5 319 50.2
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 2.1e-82 310.1 323 49.2
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.7e-82 309.7 324 50.0
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 3.5e-82 309.3 320 48.1
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 4.6e-82 308.9 320 48.4
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 6.0e-82 308.5 320 49.7
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 6.0e-82 308.5 290 52.1
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 1.0e-81 307.8 318 50.0
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 1.0e-81 307.8 318 49.7
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 1.3e-81 307.4 318 49.4
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 1.3e-81 307.4 320 49.4
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.7e-81 307.0 320 50.6
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 2.3e-81 306.6 321 49.5
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 3.0e-81 306.2 355 48.2
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 3.0e-81 306.2 324 49.1
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 3.0e-81 306.2 320 50.6
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 5.1e-81 305.4 318 50.6
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 8.7e-81 304.7 314 49.7
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.1e-80 304.3 321 49.5
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 1.1e-80 304.3 318 49.1
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 1.9e-80 303.5 317 48.6
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 2.5e-80 303.1 318 48.1
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 3.3e-80 302.8 320 46.6
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 5.6e-80 302.0 320 46.9
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 7.3e-80 301.6 318 49.4
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 3.6e-79 299.3 320 48.1
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 8.1e-79 298.1 320 47.8
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 4.0e-78 295.8 320 48.8
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 1.2e-77 294.3 332 47.6
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 1.2e-77 294.3 322 47.2
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 3.4e-77 292.7 352 45.2
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 7.6e-77 291.6 322 47.5
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 9.9e-77 291.2 362 43.9
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 1.7e-76 290.4 273 52.4
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 8.4e-76 288.1 322 47.5
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 9.3e-75 284.6 325 45.8
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 1.2e-74 284.3 300 51.0
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 3.9e-73 279.3 324 46.0
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 5.1e-73 278.9 272 50.7
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 3.3e-72 276.2 318 46.5
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.6e-71 273.9 271 51.3
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 2.8e-71 273.1 312 46.5
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 8.1e-71 271.6 393 41.5
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 1.4e-70 270.8 312 49.7
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 4.0e-70 269.2 322 45.3
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 8.7e-65 251.5 322 42.5
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 9.0e-62 241.5 322 42.5
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 3.4e-61 239.6 321 42.7
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 2.9e-60 236.5 310 41.9
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 6.7e-57 225.3 316 40.2
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 1.3e-55 221.1 324 40.7
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 3.7e-55 219.5 276 43.8
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 7.6e-53 211.8 285 43.2
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 1.7e-52 210.7 242 45.9
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 2.9e-52 209.9 177 59.9
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 1.4e-51 207.6 322 39.8
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 9.7e-48 194.9 237 48.5
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 3.7e-47 193.0 271 42.1
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 2.4e-46 190.3 202 52.0
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 3.6e-42 176.4 191 48.2
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 3.6e-42 176.4 131 66.4
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 4.6e-42 176.0 191 43.5
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.8e-41 174.1 187 48.1
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 4.8e-39 166.0 199 46.2
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 1.4e-38 164.5 142 56.3
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 7.7e-37 158.7 320 33.1
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 2.1e-34 150.6 133 52.6
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 2.7e-34 150.2 131 54.2
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 3.0e-33 146.7 176 39.8
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 3.0e-33 146.7 317 32.5
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 6.7e-33 145.6 159 43.4
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 6.7e-33 145.6 181 42.5
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 8.8e-33 145.2 139 48.9
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 1.1e-32 144.8 182 47.3
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.0e-32 144.1 131 54.2
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.2e-29 134.8 139 48.9
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 5.5e-27 125.9 113 51.3
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 1.8e-25 120.9 127 48.0
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 3.7e-23 113.2 142 43.7
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 7.0e-22 109.0 166 36.1
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 7.7e-21 105.5 134 41.0
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 2.2e-20 104.0 115 47.0
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 3.8e-20 103.2 90 52.2
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 6.5e-20 102.4 82 53.7
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.1e-19 101.7 116 43.1
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 8.2e-15 85.5 117 38.5
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 8.2e-15 85.5 64 59.4
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.1e-14 85.1 147 34.0
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 9.8e-08 62.0 80 46.2


User provided reference genes

Program Settings