Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0023s0048 Marchantia polymorpha HOM05D005565 ORTHO05D006950 3.6e-194 681.8 455 100.0
Prupe.4G089800 Prunus persica HOM05D005565 ORTHO05D006950 3.5e-112 409.5 449 59.0
Aqoxy1G01543 Aquilegia oxysepala HOM05D005565 ORTHO05D006950 2.3e-111 406.8 449 59.2
RcHm_v2.0_Chr5g0015891 Rosa chinensis HOM05D005565 ORTHO05D006950 5.0e-111 405.6 450 60.0
TAR626G1362 Trochodendron aralioides HOM05D005565 ORTHO05D006950 8.6e-111 404.8 454 59.9
Pp3c2_18610 Physcomitrium patens HOM05D005565 ORTHO05D006950 1.9e-110 403.7 464 62.1
MBI10_g00722_MAGBIO Magnolia biondii HOM05D005565 ORTHO05D006950 2.8e-109 399.8 459 63.8
FAN11G0475 Fragaria x ananassa HOM05D005565 ORTHO05D006950 6.1e-109 398.7 450 60.0
FAN21G3355 Fragaria x ananassa HOM05D005565 ORTHO05D006950 1.4e-108 397.5 450 58.9
QL05p061027 Quercus lobata HOM05D005565 ORTHO05D006950 1.8e-108 397.1 449 58.6
FAN16G1178 Fragaria x ananassa HOM05D005565 ORTHO05D006950 2.3e-108 396.7 450 60.4
FvH4_3g10030 Fragaria vesca HOM05D005565 ORTHO05D006950 4.0e-108 396.0 450 59.8
Nn3g20239 Nelumbo nucifera HOM05D005565 ORTHO05D006950 1.2e-107 394.4 453 60.5
MD05G1274000 Malus domestica HOM05D005565 ORTHO05D006950 2.0e-107 393.7 449 57.0
THA.LOC104812687 Tarenaya hassleriana HOM05D005565 ORTHO05D006950 2.0e-107 393.7 449 59.0
HPP92_019891 Vanilla planifolia HOM05D005565 ORTHO05D006950 3.4e-107 392.9 451 58.8
Cfa000824 Carpinus fangiana HOM05D005565 ORTHO05D006950 5.8e-107 392.1 449 58.6
CiPaw.10G085900 Carya illinoinensis HOM05D005565 ORTHO05D006950 2.9e-106 389.8 448 58.0
Duzib192G0128 Durio zibethinus HOM05D005565 ORTHO05D006950 8.3e-106 388.3 449 59.2
Aa31LG6G11740 Aethionema arabicum HOM05D005565 ORTHO05D006950 1.2e-104 384.4 448 57.4
Thecc.06G001100 Theobroma cacao HOM05D005565 ORTHO05D006950 2.0e-104 383.6 449 58.6
Dinv06439 Davidia involucrata HOM05D005565 ORTHO05D006950 3.5e-104 382.9 450 57.3
AT1G30480 Arabidopsis thaliana HOM05D005565 ORTHO05D006950 4.6e-104 382.5 448 57.1
Carub.0001s2870 Capsella rubella HOM05D005565 ORTHO05D006950 6.0e-104 382.1 448 57.6
VMungo0251G3128 Vigna mungo HOM05D005565 ORTHO05D006950 6.0e-104 382.1 451 56.3
CANSAT35G0106 Cannabis sativa HOM05D005565 ORTHO05D006950 7.8e-104 381.7 449 55.7
Glyma.07G224200 Glycine max HOM05D005565 ORTHO05D006950 1.7e-103 380.6 451 57.6
CsaV3_6G052300 Cucumis sativus L. HOM05D005565 ORTHO05D006950 2.3e-103 380.2 448 56.2
Lj1A1162G46 Lonicera japonica HOM05D005565 ORTHO05D006950 8.6e-103 378.3 451 59.0
Medtr4g083380 Medicago truncatula HOM05D005565 ORTHO05D006950 1.9e-102 377.1 450 58.7
Phvul.002G100900 Phaseolus vulgaris HOM05D005565 ORTHO05D006950 2.5e-102 376.7 451 55.7
PSO541G0264 Papaver somniferum HOM05D005565 ORTHO05D006950 5.6e-102 375.6 459 60.8
TWI53G0754 Tripterygium wilfordii HOM05D005565 ORTHO05D006950 5.6e-102 375.6 452 60.4
Cpa.g.sc17.91 Carica papaya HOM05D005565 ORTHO05D006950 7.3e-102 375.2 449 59.0
SEGI_17605 Sequoiadendron giganteum HOM05D005565 ORTHO05D006950 7.3e-102 375.2 459 58.8
Atru.chr10.872 Acer truncatum HOM05D005565 ORTHO05D006950 2.8e-101 373.2 452 58.8
PSO675G3222 Papaver somniferum HOM05D005565 ORTHO05D006950 2.8e-101 373.2 459 58.6
CSS0026797 Camellia sinensis var. sinensis HOM05D005565 ORTHO05D006950 6.2e-101 372.1 452 61.1
Zm00001eb315350 Zea mays HOM05D005565 ORTHO05D006950 1.1e-100 371.3 453 55.0
C03p76800 Brassica napus HOM05D005565 ORTHO05D006950 3.1e-100 369.8 450 55.1
Gohir.A10G003700 Gossypium hirsutum HOM05D005565 ORTHO05D006950 3.1e-100 369.8 450 57.6
MD10G1253700 Malus domestica HOM05D005565 ORTHO05D006950 5.2e-100 369.0 448 54.5
CANSAT35G0536 Cannabis sativa HOM05D005565 ORTHO05D006950 6.8e-100 368.6 449 54.1
MELO3C007079.2 Cucumis melo HOM05D005565 ORTHO05D006950 8.9e-100 368.2 468 53.6
ClCG01G025100 Citrullus lanatus HOM05D005565 ORTHO05D006950 1.5e-99 367.5 453 54.3
Gorai.011G004100 Gossypium raimondii HOM05D005565 ORTHO05D006950 1.5e-99 367.5 453 55.0
Sp1g26320 Schrenkiella parvula HOM05D005565 ORTHO05D006950 2.0e-99 367.1 448 55.4
CARHR029890 Cardamine hirsuta HOM05D005565 ORTHO05D006950 3.4e-99 366.3 449 53.9
Thhalv10007861m.g Eutrema salsugineum HOM05D005565 ORTHO05D006950 4.4e-99 365.9 448 55.8
Zm00001eb376390 Zea mays HOM05D005565 ORTHO05D006950 9.8e-99 364.8 453 53.6
Glyma.20G024100 Glycine max HOM05D005565 ORTHO05D006950 1.7e-98 364.0 451 57.2
A08p24410 Brassica napus HOM05D005565 ORTHO05D006950 2.2e-98 363.6 451 56.8
Sc17g0004650 Simmondsia chinensis HOM05D005565 ORTHO05D006950 2.2e-98 363.6 452 52.7
Actinidia13472 Actinidia chinensis HOM05D005565 ORTHO05D006950 3.7e-98 362.8 450 56.2
PGR083G1318 Punica granatum HOM05D005565 ORTHO05D006950 4.9e-98 362.5 452 60.0
Potri.001G372600 Populus trichocarpa HOM05D005565 ORTHO05D006950 1.9e-97 360.5 450 53.8
AagrBONN_evm.TU.Sc2ySwM_228.4814 Anthoceros agrestis HOM05D005565 ORTHO05D006950 1.2e-96 357.8 463 52.1
Lj4g0020694 Lotus japonicus HOM05D005565 ORTHO05D006950 4.6e-96 355.9 452 55.5
Ca_18788_v3 Cicer arietinum L. HOM05D005565 ORTHO05D006950 7.8e-96 355.1 449 49.7
SHI20681 Sapria himalayana HOM05D005565 ORTHO05D006950 5.0e-95 352.4 451 53.2
Potri.011G098100 Populus trichocarpa HOM05D005565 ORTHO05D006950 1.1e-94 351.3 348 60.9
Manes.06G055100 Manihot esculenta HOM05D005565 ORTHO05D006950 1.5e-94 350.9 448 53.8
Sabra11G0084800 Salix brachista HOM05D005565 ORTHO05D006950 7.3e-94 348.6 477 52.4
Oeu041100.1 Olea europaea HOM05D005565 ORTHO05D006950 2.1e-93 347.1 455 58.0
Sabra11G0091000 Salix brachista HOM05D005565 ORTHO05D006950 2.1e-93 347.1 477 52.2
COL.COLO4_26828 Corchorus olitorius HOM05D005565 ORTHO05D006950 2.8e-93 346.7 449 47.9
Sed0002078 Sechium edule HOM05D005565 ORTHO05D006950 4.7e-93 345.9 450 52.4
arahy.Tifrunner.gnm1.ann1.59WFQY Arachis hypogaea HOM05D005565 ORTHO05D006950 8.1e-93 345.1 451 57.0
Lsat_1_v5_gn_1_117781 Lactuca sativa HOM05D005565 ORTHO05D006950 8.1e-93 345.1 454 54.6
arahy.Tifrunner.gnm1.ann1.V3UUHR Arachis hypogaea HOM05D005565 ORTHO05D006950 1.1e-92 344.7 451 56.8
DCAR_027864 Daucus carota HOM05D005565 ORTHO05D006950 1.8e-92 344.0 453 53.6
vmacro03395 Vaccinium macrocarpon HOM05D005565 ORTHO05D006950 1.5e-91 340.9 454 54.4
Eucgr.D00186 Eucalyptus grandis HOM05D005565 ORTHO05D006950 2.0e-91 340.5 452 51.3
Psat7g132960 Pisum sativum HOM05D005565 ORTHO05D006950 2.6e-91 340.1 499 50.3
BcaNung05265 Brassica carinata HOM05D005565 ORTHO05D006950 2.2e-90 337.0 417 52.5
MSTRG.14795 Avicennia marina HOM05D005565 ORTHO05D006950 6.4e-90 335.5 451 60.5
EL10Ac8g19576 Beta vulgaris HOM05D005565 ORTHO05D006950 1.1e-89 334.7 455 58.9
BolC3t19934H Brassica oleracea HOM05D005565 ORTHO05D006950 1.1e-89 334.7 449 54.3
AL1G44510 Arabidopsis lyrata HOM05D005565 ORTHO05D006950 2.4e-89 333.6 448 54.7
Cc09_g08070 Coffea canephora HOM05D005565 ORTHO05D006950 2.4e-89 333.6 457 57.3
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 2.4e-89 333.6 457 51.9
BcaNung05264 Brassica carinata HOM05D005565 ORTHO05D006950 5.4e-89 332.4 449 54.1
Sabra16G0245100 Salix brachista HOM05D005565 ORTHO05D006950 4.6e-88 329.3 509 47.0
Rhsim13G0120300 Rhododendron simsii HOM05D005565 ORTHO05D006950 7.8e-88 328.6 452 53.5
Hma1.2p1_0333F.1_g128300 Hydrangea macrophylla HOM05D005565 ORTHO05D006950 1.3e-87 327.8 456 57.7
CBR_g29718 Chara braunii HOM05D005565 ORTHO05D006950 3.9e-87 326.2 493 52.1
Os01g0526100 Oryza sativa ssp. japonica HOM05D005565 ORTHO05D006950 6.6e-87 325.5 345 56.8
Manes.14G122600 Manihot esculenta HOM05D005565 ORTHO05D006950 4.3e-86 322.8 447 49.0
A09p35980 Brassica napus HOM05D005565 ORTHO05D006950 1.2e-85 321.2 448 52.5
BraA09t39122Z Brassica rapa HOM05D005565 ORTHO05D006950 1.2e-85 321.2 448 52.5
ATR0165G027 Amborella trichopoda HOM05D005565 ORTHO05D006950 3.6e-85 319.7 464 55.0
Oeu015183.1 Olea europaea HOM05D005565 ORTHO05D006950 8.1e-85 318.5 451 57.6
HanXRQChr01g0003371 Helianthus annuus HOM05D005565 ORTHO05D006950 5.2e-84 315.8 459 50.5
CAN.G954.26 Capsicum annuum HOM05D005565 ORTHO05D006950 1.5e-83 314.3 452 54.2
ECA240G3173 Erigeron canadensis HOM05D005565 ORTHO05D006950 3.2e-81 306.6 457 55.4
Migut.H01333 Erythranthe guttata HOM05D005565 ORTHO05D006950 1.0e-79 301.6 451 55.9
Sopen02g018950 Solanum pennellii HOM05D005565 ORTHO05D006950 1.0e-79 301.6 452 54.2
SGA_v2.0_scaffold1G00240 Striga asiatica HOM05D005565 ORTHO05D006950 2.5e-78 297.0 451 55.7
Solyc02g069790.3 Solanum lycopersicum HOM05D005565 ORTHO05D006950 1.2e-77 294.7 452 53.8
PGSC0003DMG400021191 Solanum tuberosum HOM05D005565 ORTHO05D006950 3.6e-77 293.1 452 52.0
SGA_v2.0_scaffold223G42860 Striga asiatica HOM05D005565 ORTHO05D006950 1.1e-76 291.6 451 55.0
Peaxi162Scf00670g00348 Petunia axillaris HOM05D005565 ORTHO05D006950 9.9e-75 285.0 452 56.0
BraA08t34396Z Brassica rapa HOM05D005565 ORTHO05D006950 1.4e-73 281.2 205 70.7
SMO351G0200 Selaginella moellendorffii HOM05D005565 ORTHO05D006950 7.1e-73 278.9 336 59.5
AUR62042519 Chenopodium quinoa HOM05D005565 ORTHO05D006950 3.5e-72 276.6 454 43.6
FAN25G2018 Fragaria x ananassa HOM05D005565 ORTHO05D006950 5.1e-71 272.7 202 69.8
Nitab4.5_0004596g0030 Nicotiana tabacum HOM05D005565 ORTHO05D006950 4.8e-69 266.2 216 67.1
GSVIVG01021628001 Vitis vinifera HOM05D005565 ORTHO05D006950 6.2e-69 265.8 186 72.0
BcaB07g32657 Brassica carinata HOM05D005565 ORTHO05D006950 1.6e-64 251.1 188 69.1
C05p29480 Brassica napus HOM05D005565 ORTHO05D006950 1.6e-64 251.1 188 69.1
BolC5t31678H Brassica oleracea HOM05D005565 ORTHO05D006950 1.6e-64 251.1 188 69.1
vmacro03441 Vaccinium macrocarpon HOM05D005565 ORTHO05D006950 8.4e-58 228.8 192 65.6
Haze_05807 Corylus avellana HOM05D005565 ORTHO05D006950 3.2e-57 226.9 361 51.0
MBI18_g10581_MAGBIO Magnolia biondii HOM05D005565 ORTHO05D006950 6.7e-55 219.2 358 47.2
CDE10G1222 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 8.7e-55 218.8 165 67.9
BcaB07g32683 Brassica carinata HOM05D005565 ORTHO05D006950 4.3e-54 216.5 448 44.9
BcaC01g00198 Brassica carinata HOM05D005565 ORTHO05D006950 4.0e-52 209.9 162 66.7
Gohir.D10G003700 Gossypium hirsutum HOM05D005565 ORTHO05D006950 7.6e-51 205.7 359 48.2
CDE10G1151 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 2.1e-48 197.6 450 42.4
MCO12G324 Micromonas commoda HOM05D005565 ORTHO05D006950 8.7e-47 192.2 466 36.3
Lalb_Chr05g0219831 Lupinus albus HOM05D005565 ORTHO05D006950 2.8e-45 187.2 151 63.6
Cre11.g467591 Chlamydomonas reinhardtii HOM05D005565 ORTHO05D006950 3.8e-42 176.8 514 39.3
Haze_05809 Corylus avellana HOM05D005565 ORTHO05D006950 1.6e-40 171.4 117 72.6
Haze_26712 Corylus avellana HOM05D005565 ORTHO05D006950 8.8e-39 165.6 206 47.1
Dinv23083 Davidia involucrata HOM05D005565 ORTHO05D006950 1.5e-38 164.9 355 47.0
Hma1.2p1_0333F.1_g128290 Hydrangea macrophylla HOM05D005565 ORTHO05D006950 1.8e-36 157.9 95 77.9
Nitab4.5_0002719g0090 Nicotiana tabacum HOM05D005565 ORTHO05D006950 2.4e-36 157.5 95 78.9
BcaB07g32658 Brassica carinata HOM05D005565 ORTHO05D006950 5.0e-34 149.8 95 74.7
C07p15100 Brassica napus HOM05D005565 ORTHO05D006950 1.1e-30 138.7 101 68.3
AUR62027340 Chenopodium quinoa HOM05D005565 ORTHO05D006950 2.9e-26 124.0 308 39.6
PRCOL_00005056 Prasinoderma coloniale HOM05D005565 ORTHO05D006950 1.5e-22 111.7 214 38.8
TPR.G34068 Trifolium pratense HOM05D005565 ORTHO05D006950 7.2e-17 92.8 209 51.7
CBR_g23080 Chara braunii HOM05D005565 ORTHO05D006950 9.4e-17 92.4 104 43.3
SGA_v2.0_scaffold22G09881 Striga asiatica HOM05D005565 ORTHO05D006950 1.2e-16 92.0 95 51.6
CDE10G0349 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 4.0e-15 87.0 89 57.3
BcaC01g00197 Brassica carinata HOM05D005565 ORTHO05D006950 2.5e-09 67.8 209 45.0
CBR_g28574 Chara braunii HOM05D000409 ORTHO05D001956 2.7e-08 64.3 101 37.6
CBR_g28575 Chara braunii HOM05D001563 ORTHO05D001956 3.6e-08 63.9 103 37.9
Mapoly0038s0101 Marchantia polymorpha HOM05D001563 ORTHO05D001956 4.7e-08 63.5 108 36.1
CBR_g28571 Chara braunii HOM05D001563 ORTHO05D001956 6.1e-08 63.2 101 37.6
SMO348G0102 Selaginella moellendorffii HOM05D001563 ORTHO05D001956 6.1e-08 63.2 108 32.4
Ca_19741_v3 Cicer arietinum L. HOM05D001563 ORTHO05D001956 8.0e-08 62.8 101 37.6
Psat0s2394g0080 Pisum sativum HOM05D001563 ORTHO05D001956 8.0e-08 62.8 101 37.6
SEGI_22204 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 1.0e-07 62.4 115 35.7
TPR.G34178 Trifolium pratense HOM05D001563 ORTHO05D001956 1.0e-07 62.4 101 37.6
HanXRQChr09g0262121 Helianthus annuus HOM05D001563 ORTHO05D001956 2.3e-07 61.2 106 35.8
SGA_v2.0_scaffold273G46430 Striga asiatica HOM05D005565 ORTHO05D402892 6.8e-07 59.7 104 43.3
Lalb_Chr15g0080491 Lupinus albus HOM05D001563 ORTHO05D001956 1.5e-06 58.5 101 35.6
Solyc12g008750.3 Solanum lycopersicum HOM05D001563 ORTHO05D001956 1.5e-06 58.5 103 31.1
Sopen12g003680 Solanum pennellii HOM05D001563 ORTHO05D001956 1.5e-06 58.5 103 31.1
SGA_v2.0_scaffold74G24562 Striga asiatica HOM05D005565 ORTHO05D401758 1.5e-06 58.5 103 42.7
PGSC0003DMG400000344 Solanum tuberosum HOM05D001563 ORTHO05D001956 2.6e-06 57.8 103 31.1
SEGI_35596 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 4.4e-06 57.0 101 34.7
arahy.Tifrunner.gnm1.ann1.272FN3 Arachis hypogaea HOM05D001563 ORTHO05D001956 5.7e-06 56.6 101 34.7
HanXRQChr11g0324861 Helianthus annuus HOM05D001563 ORTHO05D001956 5.7e-06 56.6 102 34.3
Nitab4.5_0005471g0020 Nicotiana tabacum HOM05D001563 ORTHO05D001956 5.7e-06 56.6 103 31.1
SEGI_21623 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 5.7e-06 56.6 101 32.7
CDE02G1409 Ceratophyllum demersum HOM05D002097 ORTHO05D002248 7.5e-06 56.2 99 28.3
Nitab4.5_0000540g0190 Nicotiana tabacum HOM05D001563 ORTHO05D001956 7.5e-06 56.2 103 31.1
AagrBONN_evm.TU.Sc2ySwM_117.747 Anthoceros agrestis HOM05D001563 ORTHO05D001956 9.8e-06 55.8 101 33.7


User provided reference genes

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