Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G058200 Manihot esculenta HOM05D006570 ORTHO05D008193 2.5e-267 924.9 466 100.0
Potri.014G198000 Populus trichocarpa HOM05D006570 ORTHO05D008193 1.4e-185 653.3 466 71.9
Atru.chr6.3468 Acer truncatum HOM05D006570 ORTHO05D008193 2.7e-176 622.5 423 72.3
Duzib133G0843 Durio zibethinus HOM05D006570 ORTHO05D008193 3.3e-174 615.5 453 68.4
Sabra14G0132400 Salix brachista HOM05D006570 ORTHO05D008193 8.1e-173 610.9 536 61.4
Haze_04512 Corylus avellana HOM05D006570 ORTHO05D008193 8.9e-172 607.4 434 69.4
Gohir.D07G093500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 8.9e-172 607.4 444 67.8
Gorai.001G100200 Gossypium raimondii HOM05D006570 ORTHO05D008193 8.9e-172 607.4 444 67.8
Ciclev10015195m.g Citrus clementina HOM05D006570 ORTHO05D008193 3.4e-171 605.5 453 66.2
TWI18G1431 Tripterygium wilfordii HOM05D006570 ORTHO05D008193 7.6e-171 604.4 468 65.8
Cfa006298 Carpinus fangiana HOM05D006570 ORTHO05D008193 9.9e-171 604.0 434 68.4
Thecc.01G203700 Theobroma cacao HOM05D006570 ORTHO05D008193 1.1e-169 600.5 456 66.7
Gohir.A07G088500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 5.1e-167 591.7 443 66.8
Dinv28772 Davidia involucrata HOM05D006570 ORTHO05D008193 1.4e-164 583.6 453 65.6
Cpa.g.sc8.9 Carica papaya HOM05D006570 ORTHO05D008193 1.5e-163 580.1 472 64.0
Prupe.6G214800 Prunus persica HOM05D006570 ORTHO05D008193 1.5e-163 580.1 418 69.1
CANSAT01G0840 Cannabis sativa HOM05D006570 ORTHO05D008193 2.0e-163 579.7 431 66.6
FvH4_3g28500 Fragaria vesca HOM05D006570 ORTHO05D008193 7.6e-163 577.8 452 65.3
Aa31sc565G50 Aethionema arabicum HOM05D006570 ORTHO05D008193 2.9e-162 575.9 450 64.2
COL.COLO4_19720 Corchorus olitorius HOM05D006570 ORTHO05D008193 2.9e-162 575.9 403 70.2
RcHm_v2.0_Chr5g0052821 Rosa chinensis HOM05D006570 ORTHO05D008193 2.9e-162 575.9 438 66.2
FAN21G3910 Fragaria x ananassa HOM05D006570 ORTHO05D008193 7.1e-161 571.2 451 64.7
CiPaw.07G077200 Carya illinoinensis HOM05D006570 ORTHO05D008193 7.8e-160 567.8 447 64.4
MD15G1141300 Malus domestica HOM05D006570 ORTHO05D008193 1.0e-159 567.4 419 69.5
Actinidia11648 Actinidia chinensis HOM05D006570 ORTHO05D008193 1.3e-159 567.0 427 68.4
Lj3g0023743 Lotus japonicus HOM05D006570 ORTHO05D008193 5.1e-159 565.1 453 61.8
Phvul.010G109900 Phaseolus vulgaris HOM05D006570 ORTHO05D008193 1.9e-158 563.1 460 62.2
Lj2A1109T67 Lonicera japonica HOM05D006570 ORTHO05D008193 1.3e-157 560.5 459 62.1
Ca_23570_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 1.1e-156 557.4 457 61.1
Ca_23579_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 1.1e-156 557.4 457 61.1
TAR362G0032 Trochodendron aralioides HOM05D006570 ORTHO05D008193 1.4e-156 557.0 452 63.5
Ah.11g050650 Amaranthus hybridus HOM05D006570 ORTHO05D008193 9.0e-156 554.3 438 64.2
Solyc09g018850.3 Solanum lycopersicum HOM05D006570 ORTHO05D008193 9.0e-156 554.3 445 63.4
Sopen09g012610 Solanum pennellii HOM05D006570 ORTHO05D008193 9.0e-156 554.3 445 63.6
Oeu020442.2 Olea europaea HOM05D006570 ORTHO05D008193 1.2e-155 553.9 462 63.0
TPR.G5123 Trifolium pratense HOM05D006570 ORTHO05D008193 2.0e-155 553.1 440 61.8
vmacro02851 Vaccinium macrocarpon HOM05D006570 ORTHO05D008193 2.0e-155 553.1 461 64.4
AL9U11910 Arabidopsis lyrata HOM05D006570 ORTHO05D008193 3.4e-155 552.4 425 64.7
THA.LOC104815379 Tarenaya hassleriana HOM05D006570 ORTHO05D008193 7.6e-155 551.2 442 64.3
Medtr8g028105 Medicago truncatula HOM05D006570 ORTHO05D008193 9.9e-155 550.8 429 63.9
CsaV3_6G007600 Cucumis sativus L. HOM05D006570 ORTHO05D008193 1.3e-154 550.4 447 62.9
Lalb_Chr10g0100201 Lupinus albus HOM05D006570 ORTHO05D008193 4.9e-154 548.5 441 62.1
arahy.Tifrunner.gnm1.ann1.N5JW36 Arachis hypogaea HOM05D006570 ORTHO05D008193 1.9e-153 546.6 454 60.8
Carub.0007s3008 Capsella rubella HOM05D006570 ORTHO05D008193 3.2e-153 545.8 455 62.0
PGSC0003DMG400020287 Solanum tuberosum HOM05D006570 ORTHO05D008193 3.2e-153 545.8 449 62.6
Glyma.07G059700 Glycine max HOM05D006570 ORTHO05D008193 4.2e-153 545.4 438 63.9
GSVIVG01004124001 Vitis vinifera HOM05D006570 ORTHO05D008193 7.1e-153 544.7 459 60.6
Cc01_g15710 Coffea canephora HOM05D006570 ORTHO05D008193 1.2e-152 543.9 465 60.2
SalBow6G3933 Salvia bowleyana HOM05D006570 ORTHO05D008193 2.7e-152 542.7 448 60.7
BcaB03g16147 Brassica carinata HOM05D006570 ORTHO05D008193 3.5e-152 542.3 442 62.7
VMungo0331G0798 Vigna mungo HOM05D006570 ORTHO05D008193 3.5e-152 542.3 459 60.8
PGR083G1749 Punica granatum HOM05D006570 ORTHO05D008193 4.6e-152 542.0 423 67.1
arahy.Tifrunner.gnm1.ann1.L2UBUE Arachis hypogaea HOM05D006570 ORTHO05D008193 7.9e-152 541.2 456 61.0
Migut.D00755 Erythranthe guttata HOM05D006570 ORTHO05D008193 1.7e-151 540.0 434 63.8
AT4G12740 Arabidopsis thaliana HOM05D006570 ORTHO05D008193 3.0e-151 539.3 432 63.2
SalBow2G2795 Salvia bowleyana HOM05D006570 ORTHO05D008193 3.0e-151 539.3 450 60.4
Sp7g09050 Schrenkiella parvula HOM05D006570 ORTHO05D008193 3.0e-151 539.3 448 61.8
BcaC02g09469 Brassica carinata HOM05D006570 ORTHO05D008193 6.6e-151 538.1 447 62.0
A04p09180 Brassica napus HOM05D006570 ORTHO05D008193 6.6e-151 538.1 447 62.0
Hma1.2p1_0834F.1_g225720 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 1.9e-150 536.6 402 67.2
Peaxi162Scf12724g00014 Petunia axillaris HOM05D006570 ORTHO05D008193 2.5e-150 536.2 437 62.9
C04p43140 Brassica napus HOM05D006570 ORTHO05D008193 5.6e-150 535.0 427 63.5
CARHR218120 Cardamine hirsuta HOM05D006570 ORTHO05D008193 1.1e-148 530.8 455 60.2
EL10Ac5g10565 Beta vulgaris HOM05D006570 ORTHO05D008193 1.2e-147 527.3 414 63.8
ClCG06G001630 Citrullus lanatus HOM05D006570 ORTHO05D008193 7.6e-147 524.6 440 61.8
Thhalv10024575m.g Eutrema salsugineum HOM05D006570 ORTHO05D008193 7.6e-147 524.6 420 62.1
HanXRQChr16g0508391 Helianthus annuus HOM05D006570 ORTHO05D008193 4.9e-146 521.9 418 62.7
ECA236G3480 Erigeron canadensis HOM05D006570 ORTHO05D008193 5.4e-145 518.5 442 61.1
Nitab4.5_0005967g0010 Nicotiana tabacum HOM05D006570 ORTHO05D008193 1.2e-144 517.3 441 60.8
Aqoxy1G01428 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 4.6e-144 515.4 471 57.5
Aqoxy7G03970 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 1.0e-143 514.2 474 56.8
BolC4t25891H Brassica oleracea HOM05D006570 ORTHO05D008193 1.1e-142 510.8 440 60.2
BraA04t16613Z Brassica rapa HOM05D006570 ORTHO05D008193 1.1e-142 510.8 447 59.3
AUR62008045 Chenopodium quinoa HOM05D006570 ORTHO05D008193 1.1e-142 510.8 453 59.2
AUR62032342 Chenopodium quinoa HOM05D006570 ORTHO05D008193 1.1e-142 510.8 453 59.2
AUR62028620 Chenopodium quinoa HOM05D006570 ORTHO05D008193 2.5e-142 509.6 458 58.3
DCAR_012712 Daucus carota HOM05D006570 ORTHO05D008193 4.3e-142 508.8 400 65.2
PSO170G2695 Papaver somniferum HOM05D006570 ORTHO05D008193 4.3e-142 508.8 435 59.8
Nitab4.5_0009028g0030 Nicotiana tabacum HOM05D006570 ORTHO05D008193 7.4e-142 508.1 469 58.4
CAN.G3.13 Capsicum annuum HOM05D006570 ORTHO05D008193 9.6e-142 507.7 381 65.6
MBI10_g46813_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 3.7e-141 505.8 452 57.7
Hund09495 Selenicereus undatus HOM05D006570 ORTHO05D008193 3.7e-141 505.8 382 64.9
Psat4g158840 Pisum sativum HOM05D006570 ORTHO05D008193 1.5e-139 500.4 382 64.9
Sc05g0001500 Simmondsia chinensis HOM05D006570 ORTHO05D008193 2.6e-139 499.6 478 56.3
SHI10196 Sapria himalayana HOM05D006570 ORTHO05D008193 4.2e-137 492.3 453 56.1
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 2.7e-136 489.6 422 60.9
HPP92_007590 Vanilla planifolia HOM05D006570 ORTHO05D008193 4.6e-136 488.8 455 55.6
ATR0743G076 Amborella trichopoda HOM05D006570 ORTHO05D008193 8.7e-135 484.6 403 62.3
CDE09G0147 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 1.9e-134 483.4 463 55.7
MELO3C022371.2 Cucumis melo HOM05D006570 ORTHO05D008193 1.3e-133 480.7 423 59.6
Os12g0211400 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 3.5e-128 462.6 472 52.8
Hma1.2p1_0834F.1_g225710 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 6.9e-124 448.4 366 63.1
Lsat_1_v5_gn_8_98640 Lactuca sativa HOM05D006570 ORTHO05D008193 4.5e-123 445.7 404 58.2
FAN25G2405 Fragaria x ananassa HOM05D006570 ORTHO05D008193 3.8e-122 442.6 560 45.9
Zm00001eb411200 Zea mays HOM05D006570 ORTHO05D008193 1.1e-121 441.0 461 52.7
SEGI_12299 Sequoiadendron giganteum HOM05D006570 ORTHO05D008193 3.0e-119 433.0 461 51.0
Os12g0212100 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 1.7e-117 427.2 404 55.7
unitig_90.g27554 Utricularia gibba HOM05D006570 ORTHO05D008193 4.7e-112 409.1 427 53.6
Eucgr.H00676 Eucalyptus grandis HOM05D006570 ORTHO05D008193 1.8e-111 407.1 314 65.6
Hma1.2p1_1756F.1_g301050 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 2.2e-106 390.2 320 62.2
Actinidia23139 Actinidia chinensis HOM05D006570 ORTHO05D008193 3.6e-104 382.9 447 49.2
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 5.7e-102 375.6 503 44.7
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 9.1e-100 368.2 542 42.3
MBI10_g40441_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 5.2e-95 352.4 322 55.9
FAN11G0847 Fragaria x ananassa HOM05D006570 ORTHO05D008193 5.9e-83 312.4 242 62.8
SMO202G0040 Selaginella moellendorffii HOM05D006570 ORTHO05D008193 3.3e-81 306.6 297 54.9
QL01p050877 Quercus lobata HOM05D006570 ORTHO05D008193 2.3e-79 300.4 263 59.3
PRCOL_00001086 Prasinoderma coloniale HOM05D006570 ORTHO05D008193 6.2e-72 275.8 401 41.4
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 3.1e-71 273.5 464 37.9
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 2.7e-59 233.8 526 32.3
CSS0008113 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 1.2e-56 224.9 126 84.1
CSS0032158 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 1.2e-56 224.9 126 84.1
GSVIVG01038286001 Vitis vinifera HOM05D006570 ORTHO05D008193 4.4e-54 216.5 185 55.7
QL01p050896 Quercus lobata HOM05D006570 ORTHO05D008193 1.7e-42 177.9 115 79.1
Ca_29093_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 2.4e-39 167.5 216 42.1
DCAR_012713 Daucus carota HOM05D006570 ORTHO05D008193 2.4e-39 167.5 131 64.1
CDE02G1275 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 2.4e-31 141.0 141 53.9
QL05p014267 Quercus lobata HOM05D006570 ORTHO05D008193 5.8e-30 136.3 190 42.6
QL05p014599 Quercus lobata HOM05D006570 ORTHO05D008193 1.0e-26 125.6 128 53.9
Glyma.16G028601 Glycine max HOM05D006570 ORTHO05D008193 1.3e-24 118.6 110 51.8
PGR142G0081 Punica granatum HOM05D006570 ORTHO05D008193 1.3e-24 118.6 137 50.4
CBR_g38520 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-23 115.2 89 60.7
CBR_g38518 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-11 75.5 140 34.3
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 2.4e-07 61.2 216 27.8
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 3.1e-07 60.8 148 32.4
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 9.0e-07 59.3 216 27.3
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 1.5e-06 58.5 270 25.6
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 2.0e-06 58.2 194 28.4
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 2.6e-06 57.8 234 24.8
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 2.6e-06 57.8 187 29.4
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 2.6e-06 57.8 194 27.8
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 3.4e-06 57.4 193 28.0
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 4.5e-06 57.0 187 29.4
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 4.5e-06 57.0 187 29.4
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 4.5e-06 57.0 193 28.5
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 5.9e-06 56.6 161 28.0
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 7.7e-06 56.2 197 26.9
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 7.7e-06 56.2 193 27.5
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 7.7e-06 56.2 142 31.7


User provided reference genes

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