Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1843.2 948 100.0
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1712.2 949 91.8
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1642.9 954 87.0
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1637.9 954 87.7
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1629.0 957 86.4
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1625.5 964 86.5
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1610.1 954 85.7
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1608.6 957 85.5
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1605.5 907 87.7
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1600.9 958 84.4
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1599.7 953 85.8
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1597.4 953 85.3
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1593.9 955 85.1
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1588.5 962 84.8
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1583.9 961 84.3
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1583.2 962 83.8
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1583.2 909 84.8
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1578.9 984 82.5
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1577.4 953 85.1
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1576.2 957 84.0
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1572.8 956 81.4
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1571.6 957 82.0
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1571.6 957 83.8
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1570.8 956 83.3
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1570.4 956 84.4
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1569.7 958 82.5
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1569.7 956 82.5
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1565.4 957 83.4
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1565.1 952 83.6
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1564.7 950 83.6
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1564.7 954 83.5
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1564.3 958 82.5
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1563.5 960 83.5
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1562.4 955 81.3
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1562.0 962 83.2
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1559.7 951 83.4
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1559.7 912 84.1
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1558.5 958 82.6
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1555.4 956 82.5
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1555.0 956 82.0
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1554.7 958 81.8
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1553.9 911 84.2
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1553.1 959 80.9
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1552.7 954 81.8
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1552.0 959 82.1
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1551.2 956 82.1
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1550.0 958 81.5
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1550.0 973 80.6
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1548.9 954 83.5
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1547.7 957 81.3
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1545.8 959 81.1
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1545.8 961 80.9
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1544.3 955 81.4
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1541.6 959 80.9
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1541.6 964 81.2
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1538.1 961 82.0
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1537.3 954 81.2
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1535.8 981 79.6
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1533.1 964 81.7
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1532.3 954 80.8
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1531.9 913 82.7
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1530.8 957 81.5
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1528.8 959 80.6
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1528.8 954 82.1
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1528.5 961 80.7
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1527.3 965 81.2
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1525.4 957 80.5
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1512.7 954 80.7
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1510.7 958 80.9
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1508.8 960 81.7
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1505.7 919 79.3
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1503.4 977 77.8
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1503.4 905 82.1
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1502.3 915 80.5
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1501.9 957 81.3
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1501.5 960 79.2
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1500.3 957 81.3
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1500.0 1181 68.6
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1497.3 955 79.3
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1496.1 960 80.1
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1481.8 954 79.8
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1473.4 962 78.4
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1473.0 918 79.8
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1462.6 969 77.1
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1462.2 967 78.2
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1461.8 980 77.3
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1461.4 907 81.5
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1461.0 949 78.4
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1459.9 969 77.4
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1453.3 983 76.8
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1453.3 983 76.8
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1449.1 966 77.4
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1448.7 957 77.2
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1444.5 975 77.1
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1440.6 823 84.3
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1435.6 978 76.3
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1432.2 954 76.1
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1431.4 954 76.2
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1428.7 960 73.0
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1419.8 829 83.5
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1416.7 949 73.9
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1414.1 960 76.9
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1391.3 947 72.8
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1387.5 948 71.6
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1387.1 916 74.8
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1386.3 902 75.8
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1367.8 917 74.3
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1336.6 784 85.2
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1334.7 902 71.3
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1334.3 955 70.7
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1307.0 786 81.9
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1273.1 726 85.4
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1234.6 921 66.0
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1197.6 783 73.3
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1194.9 939 64.5
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1170.2 686 84.4
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 0.0e+00 1150.2 980 59.2
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1141.3 986 60.2
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 0.0e+00 1134.0 948 63.3
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 0.0e+00 1120.1 958 60.3
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 0.0e+00 1117.8 721 79.8
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 2.4e-301 1038.9 659 79.8
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.1e-282 976.9 788 60.3
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 1.5e-282 976.5 672 76.0
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 1.0e-275 953.7 589 81.8
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.4e-256 890.2 561 80.4
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 2.4e-240 836.3 521 79.8
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 1.2e-228 797.3 603 70.0
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 1.9e-216 756.9 441 88.2
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 4.7e-212 742.3 499 73.7
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 3.9e-190 669.5 386 84.5
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.8e-188 663.3 403 84.6
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 3.1e-179 633.3 1030 37.9
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 7.9e-151 538.9 417 63.5
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 1.1e-149 535.0 406 64.0
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 1.4e-142 511.5 825 38.2
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 1.6e-127 461.5 481 55.5
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 4.5e-122 443.4 253 84.2
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 2.1e-119 434.5 223 91.9
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 8.9e-110 402.5 1052 27.9
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 2.7e-106 391.0 279 69.5
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 9.5e-104 382.5 850 33.1
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 2.0e-93 348.2 253 67.6
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 2.0e-93 348.2 253 67.6
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 1.6e-90 338.6 365 46.3
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 1.1e-88 332.4 249 66.7
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 1.7e-84 318.5 286 60.1
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 6.9e-62 243.4 148 78.4
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.2e-53 216.1 174 54.0
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 6.0e-50 203.8 149 64.4
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 6.0e-50 203.8 149 64.4
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 4.8e-47 194.1 139 66.2
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 6.3e-47 193.7 118 78.0
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 4.6e-42 177.6 103 82.5
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 2.3e-41 175.3 159 55.3
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 1.9e-40 172.2 141 55.3
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 3.7e-39 167.9 99 79.8
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 1.2e-37 162.9 131 63.4
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.5e-37 162.5 240 43.3
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.2e-35 154.5 76 90.8
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.2e-34 152.9 76 89.5
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.6e-34 152.5 75 92.0
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 3.6e-34 151.4 115 67.0
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 6.1e-34 150.6 76 89.5
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 1.8e-33 149.1 88 83.0
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.1e-32 146.4 78 84.6
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.5e-32 146.0 74 89.2
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 4.5e-29 134.4 98 70.4
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 5.0e-28 131.0 129 51.9
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 4.7e-26 124.4 78 78.2
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 6.1e-26 124.0 103 57.3
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.3e-25 122.1 65 87.7
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 2.6e-24 118.6 118 53.4
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 4.8e-23 114.4 128 52.3
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 8.2e-23 113.6 114 49.1
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 4.0e-17 94.7 275 25.1
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 7.5e-16 90.5 82 56.1
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 2.4e-14 85.5 56 69.6
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 8.0e-10 70.5 46 63.0
CSS0019611 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D019539 6.8e-09 67.4 80 58.8
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 1.5e-08 66.2 190 28.9
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 1.3e-07 63.2 43 62.8
HanXRQChr15g0465621 Helianthus annuus HOM05D003791 ORTHO05D019539 2.4e-06 58.9 63 44.4


User provided reference genes

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