Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1847.8 941 100.0
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1714.1 949 91.8
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1624.4 956 86.1
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1613.2 954 84.6
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1612.0 957 84.7
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1610.5 963 84.8
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1598.6 956 84.5
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1591.6 952 84.1
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1587.0 954 83.1
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1586.6 954 83.5
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1585.9 907 86.1
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1577.0 909 84.4
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1568.5 961 82.5
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1567.7 984 81.1
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1565.1 949 81.2
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1564.7 954 83.4
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1564.7 961 82.3
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1562.7 953 83.2
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1562.4 962 82.7
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1562.0 957 80.8
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1560.8 957 83.0
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1560.8 956 83.3
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1555.0 957 82.1
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1553.5 962 81.1
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1553.1 956 81.4
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1552.7 956 80.6
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1552.0 960 81.9
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1551.6 962 82.0
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1551.2 956 81.7
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1550.4 954 81.3
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1549.3 951 80.4
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1548.9 962 80.8
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1548.9 958 80.4
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1548.5 957 80.9
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1546.6 911 83.2
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1546.6 958 81.3
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1546.2 950 81.4
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1545.8 954 81.2
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1545.8 958 80.2
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1545.8 960 79.9
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1545.8 957 80.7
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1545.4 951 81.2
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1544.3 962 80.5
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1544.3 912 83.0
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1543.9 955 79.8
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1542.7 954 80.3
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1541.6 958 80.0
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1541.6 959 79.4
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1541.2 952 81.8
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1540.4 957 80.1
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1539.2 962 79.7
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1536.9 956 80.1
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1528.5 973 78.8
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1525.8 958 80.2
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1525.4 961 79.6
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1521.9 958 78.9
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1521.1 942 81.5
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1520.0 961 80.1
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1520.0 953 80.3
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1519.2 964 79.9
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1518.4 953 79.2
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1515.4 955 79.5
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1515.0 955 81.6
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1513.4 953 79.0
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1513.0 958 81.2
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1513.0 973 78.1
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1511.5 966 79.4
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1510.4 960 79.0
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1503.8 918 78.8
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1497.6 956 79.7
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1495.3 958 79.5
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1494.2 958 77.9
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1492.6 956 79.6
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1491.5 915 79.1
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1483.4 956 77.6
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1481.8 953 78.2
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1477.6 905 80.0
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1475.7 961 78.6
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1475.3 975 75.4
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1469.5 1187 66.6
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1468.8 919 79.3
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1464.5 969 76.9
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1463.4 953 78.3
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1461.8 969 76.6
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1460.7 967 77.1
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1460.3 961 76.9
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1456.4 980 76.1
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1456.0 966 76.9
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1455.3 949 77.6
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1454.9 983 76.1
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1454.9 983 76.1
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1448.3 975 76.7
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1442.9 952 75.6
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1437.9 978 75.8
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1436.8 905 79.4
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1431.0 957 75.7
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1430.6 953 75.7
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1428.7 823 82.6
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1421.8 948 73.4
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1420.6 829 83.4
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1398.3 960 71.7
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1396.7 961 75.3
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1388.2 940 71.7
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1383.6 913 74.8
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1380.9 947 71.5
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1374.4 909 75.4
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1363.6 917 73.3
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1325.1 957 70.3
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1324.3 784 83.3
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1317.8 903 70.3
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1302.3 786 81.4
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1259.2 726 84.4
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1238.4 921 65.5
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1185.2 778 72.6
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1165.6 687 84.0
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1162.1 940 62.4
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1136.3 980 60.0
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 0.0e+00 1129.8 979 57.8
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 0.0e+00 1115.1 944 62.3
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 0.0e+00 1114.8 953 60.1
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 0.0e+00 1096.6 722 77.7
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 8.9e-296 1020.4 654 78.3
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.7e-278 963.0 788 60.0
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 7.8e-276 954.1 673 73.4
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 3.4e-271 938.7 583 81.0
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.1e-252 876.3 561 79.0
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 3.7e-241 839.0 521 80.2
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 1.3e-230 803.9 599 69.4
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.3e-214 750.7 498 74.3
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 2.3e-211 740.0 441 84.4
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.0e-186 657.1 386 83.2
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.2e-183 647.9 402 81.3
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 1.9e-181 640.6 1025 38.2
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 9.9e-154 548.5 408 66.4
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 2.9e-145 520.4 415 62.2
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 8.7e-142 508.8 824 37.7
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 2.0e-125 454.5 480 54.4
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 5.0e-121 439.9 253 83.4
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 6.7e-118 429.5 223 91.0
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 2.3e-110 404.4 1052 28.4
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 1.4e-107 395.2 286 69.2
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 4.0e-102 377.1 805 33.5
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 3.6e-95 354.0 253 69.2
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 3.6e-95 354.0 253 69.2
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 9.8e-93 345.9 249 69.5
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 4.5e-90 337.0 365 46.6
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 6.4e-84 316.6 253 64.8
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 2.0e-61 241.9 148 76.4
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 4.4e-53 214.2 174 54.6
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 3.9e-49 201.1 149 62.4
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 3.9e-49 201.1 149 62.4
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 3.1e-46 191.4 139 64.0
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 3.4e-45 188.0 155 64.5
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.3e-44 186.0 118 73.7
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 7.9e-42 176.8 99 86.9
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 1.7e-41 175.6 165 55.8
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.1e-40 172.9 239 45.6
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 5.6e-40 170.6 141 55.3
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 3.8e-36 157.9 131 62.6
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 4.2e-35 154.5 115 67.8
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.6e-34 151.0 76 90.8
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.3e-33 149.4 76 89.5
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.8e-33 149.1 75 92.0
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 6.7e-33 147.1 76 89.5
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 7.4e-32 143.7 88 79.5
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.3e-31 142.9 78 84.6
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.6e-31 142.5 74 89.2
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 8.1e-31 140.2 98 74.5
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 1.5e-29 136.0 130 58.5
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 1.1e-27 129.8 135 51.9
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 2.7e-26 125.2 121 53.7
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 1.8e-25 122.5 111 55.9
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.5e-24 118.6 65 87.7
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 8.2e-23 113.6 128 52.3
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 1.5e-21 109.4 114 47.4
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 5.7e-16 90.9 82 56.1
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 3.7e-15 88.2 292 25.0
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 2.0e-13 82.4 56 66.1
CSS0019611 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D019539 2.3e-09 68.9 131 43.5
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 2.6e-08 65.5 42 69.0
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 2.6e-08 65.5 46 58.7
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 2.2e-07 62.4 48 56.2
HanXRQChr15g0465621 Helianthus annuus HOM05D003791 ORTHO05D019539 1.1e-06 60.1 62 48.4


User provided reference genes

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