Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 1.3e-193 679.9 430 100.0
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 1.7e-188 662.9 430 94.9
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 2.2e-188 662.5 430 94.9
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 6.9e-187 657.5 430 89.8
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 5.0e-185 651.4 430 88.4
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 1.4e-184 649.8 430 93.5
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 9.4e-184 647.1 430 92.6
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 1.6e-183 646.4 430 91.9
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 1.6e-183 646.4 430 86.5
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 2.1e-183 646.0 430 93.0
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 3.6e-183 645.2 430 93.7
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 1.0e-182 643.7 430 94.7
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 2.3e-182 642.5 430 91.9
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 2.3e-182 642.5 430 87.0
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 3.0e-182 642.1 430 93.7
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 5.1e-182 641.3 430 93.0
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 6.7e-182 641.0 428 89.0
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 1.5e-181 639.8 428 92.3
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 1.5e-181 639.8 430 92.8
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 3.3e-181 638.6 428 92.5
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 3.3e-181 638.6 428 88.1
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 4.4e-181 638.3 428 87.6
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 5.7e-181 637.9 430 93.3
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 9.7e-181 637.1 430 92.3
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 1.3e-180 636.7 430 87.2
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 1.7e-180 636.3 430 92.3
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.2e-180 636.0 430 90.9
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 2.8e-180 635.6 430 92.6
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 2.8e-180 635.6 430 91.6
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 3.7e-180 635.2 430 91.9
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 1.1e-179 633.6 434 90.8
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 4.1e-179 631.7 430 91.2
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 7.0e-179 630.9 430 91.4
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 1.2e-178 630.2 430 89.5
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 1.2e-178 630.2 430 91.6
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 3.5e-178 628.6 428 91.8
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 4.5e-178 628.2 430 90.9
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 4.5e-178 628.2 430 90.0
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 1.0e-177 627.1 430 90.9
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 1.3e-177 626.7 430 89.5
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 1.7e-177 626.3 430 90.7
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 2.2e-177 625.9 430 87.2
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 3.8e-177 625.2 430 90.2
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 3.8e-177 625.2 430 90.2
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 5.0e-177 624.8 430 89.3
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 6.5e-177 624.4 430 89.8
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 8.5e-177 624.0 430 93.3
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 8.5e-177 624.0 428 89.5
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 1.4e-176 623.2 430 88.4
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 1.4e-176 623.2 430 89.1
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 2.5e-176 622.5 430 90.5
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 3.2e-176 622.1 430 84.4
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 4.2e-176 621.7 430 90.5
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 9.4e-176 620.5 430 88.4
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 9.4e-176 620.5 430 87.2
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 1.6e-175 619.8 430 91.4
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 1.6e-175 619.8 430 90.9
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 2.1e-175 619.4 430 88.6
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 2.7e-175 619.0 430 89.1
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 3.6e-175 618.6 430 89.8
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 1.4e-174 616.7 430 87.7
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.4e-174 616.7 426 91.8
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 1.8e-174 616.3 430 88.4
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.8e-174 616.3 430 91.2
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 2.3e-174 615.9 430 87.7
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 2.3e-174 615.9 430 89.8
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 3.9e-174 615.1 453 81.9
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 3.9e-174 615.1 430 84.9
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 6.7e-174 614.4 430 90.5
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 1.5e-173 613.2 450 75.8
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 2.6e-173 612.5 430 83.5
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 3.3e-173 612.1 430 87.4
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 5.7e-173 611.3 430 89.3
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 5.7e-173 611.3 430 88.1
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.7e-172 609.8 430 84.4
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 1.7e-172 609.8 429 83.7
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.2e-172 609.4 424 89.9
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 2.8e-172 609.0 430 88.1
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 4.8e-172 608.2 430 84.2
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 4.8e-172 608.2 430 84.2
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 6.3e-172 607.8 430 89.8
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 3.1e-171 605.5 430 89.1
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 4.1e-171 605.1 430 85.6
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 4.1e-171 605.1 430 88.8
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 5.3e-171 604.7 430 82.6
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 2.2e-169 599.4 430 84.9
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 1.1e-168 597.0 430 86.5
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 1.5e-168 596.7 430 85.3
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 5.5e-168 594.7 430 88.6
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 6.1e-167 591.3 430 79.3
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 6.7e-166 587.8 430 84.7
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 8.8e-166 587.4 430 83.0
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 4.4e-165 585.1 430 84.4
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 7.5e-165 584.3 428 84.6
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 7.5e-165 584.3 428 84.6
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 1.4e-163 580.1 430 84.4
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 6.5e-161 571.2 446 81.4
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 1.5e-160 570.1 430 73.3
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 1.2e-157 560.5 430 83.7
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 9.8e-157 557.4 451 78.7
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 2.7e-154 549.3 430 78.6
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 4.5e-154 548.5 441 82.5
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 5.9e-154 548.1 430 72.8
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 1.3e-153 547.0 430 80.7
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 8.6e-153 544.3 473 74.4
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 1.6e-151 540.0 407 85.3
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 1.6e-151 540.0 468 68.2
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 2.8e-151 539.3 430 80.2
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 1.4e-147 526.9 430 70.7
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 2.4e-147 526.2 380 91.8
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 1.1e-144 517.3 384 88.8
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 7.8e-122 441.4 322 83.9
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 2.2e-116 423.3 430 68.1
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 1.6e-111 407.1 429 65.7
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 3.5e-98 362.8 228 89.0
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 1.8e-94 350.5 185 90.8
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 5.1e-89 332.4 170 94.7
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.1e-75 288.1 257 78.6
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 9.1e-70 268.5 264 84.5
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 5.0e-68 262.7 301 51.5
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 9.4e-67 258.5 176 85.8
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 2.6e-61 240.4 126 96.0
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 2.6e-61 240.4 126 96.0
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 2.6e-53 213.8 435 50.1
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 3.8e-44 183.3 99 83.8
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 4.4e-40 169.9 253 38.7
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 9.8e-40 168.7 107 77.6
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 1.4e-38 164.9 80 95.0
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 2.9e-36 157.1 95 73.7
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 8.6e-28 129.0 299 30.4
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 6.0e-21 106.3 81 70.4
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 1.3e-20 105.1 56 82.1
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 2.1e-18 97.8 56 73.2
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 3.1e-17 94.0 50 94.0
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 2.0e-16 91.3 48 85.4
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 4.4e-16 90.1 47 95.7
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 7.5e-16 89.4 73 60.3
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 7.5e-16 89.4 73 60.3
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 3.2e-14 84.0 124 40.3
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 7.1e-14 82.8 149 43.6
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 1.6e-13 81.6 47 85.1
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 2.3e-12 77.8 42 76.2
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 6.6e-12 76.3 105 43.8
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 1.1e-11 75.5 36 88.9
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 4.3e-11 73.6 42 71.4
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 7.6e-08 62.8 134 70.9
TPR.G36494 Trifolium pratense HOM05D009291 ORTHO05D010716 4.1e-06 57.0 29 79.3


User provided reference genes

Program Settings