Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 1.4e-184 649.4 328 100.0
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.1e-160 570.1 328 87.8
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 4.8e-156 554.7 329 86.0
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 2.7e-151 538.9 328 83.5
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 5.2e-150 534.6 328 82.6
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 1.3e-137 493.4 330 75.2
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 6.6e-137 491.1 326 75.8
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.1e-136 490.3 333 76.6
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 2.5e-136 489.2 333 76.3
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 5.6e-136 488.0 332 75.6
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 1.6e-135 486.5 329 74.5
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 6.8e-134 481.1 330 72.4
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 1.5e-133 479.9 353 70.5
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 3.4e-133 478.8 348 71.8
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 7.5e-133 477.6 327 74.0
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 7.5e-133 477.6 329 73.6
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 9.8e-133 477.2 328 73.5
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 9.8e-133 477.2 330 73.0
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 1.3e-132 476.9 329 71.1
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 4.9e-132 474.9 326 73.6
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 2.7e-130 469.2 326 71.8
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 4.6e-130 468.4 321 73.2
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 5.9e-130 468.0 329 70.8
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 7.8e-130 467.6 327 71.9
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 1.7e-129 466.5 330 72.1
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 3.0e-129 465.7 329 71.7
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 3.0e-129 465.7 329 72.0
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 3.9e-129 465.3 329 72.0
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 5.0e-129 464.9 333 70.9
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 8.6e-129 464.2 327 72.5
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 8.6e-129 464.2 329 71.4
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 3.3e-128 462.2 329 71.4
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 5.6e-128 461.5 327 69.4
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 1.2e-127 460.3 326 69.3
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 3.6e-127 458.8 326 69.0
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 3.6e-127 458.8 329 69.9
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 3.6e-127 458.8 326 69.9
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 1.8e-126 456.4 326 67.8
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 3.1e-126 455.7 328 71.3
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 4.0e-126 455.3 326 68.1
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 5.2e-126 454.9 331 70.7
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 2.0e-125 453.0 327 68.5
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 9.8e-125 450.7 294 76.9
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 1.7e-124 449.9 401 61.1
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 4.9e-124 448.4 327 68.5
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 4.9e-124 448.4 328 67.4
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 4.9e-124 448.4 362 63.5
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 3.2e-123 445.7 358 64.8
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 4.1e-123 445.3 328 67.4
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 4.1e-123 445.3 327 70.3
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 5.4e-123 444.9 327 69.1
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 5.4e-123 444.9 322 71.1
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 1.2e-122 443.7 329 67.8
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.0e-122 443.0 327 68.5
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 2.0e-122 443.0 329 67.5
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 2.7e-122 442.6 327 68.8
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 3.5e-122 442.2 327 68.2
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 3.5e-122 442.2 327 69.1
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 3.5e-122 442.2 327 69.4
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 3.5e-122 442.2 327 68.2
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 6.0e-122 441.4 327 68.5
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 2.3e-121 439.5 328 68.9
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 3.9e-121 438.7 320 68.4
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.1e-120 437.2 327 68.5
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 1.1e-120 437.2 327 68.2
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 1.1e-120 437.2 327 67.9
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 1.1e-120 437.2 327 67.9
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 1.5e-120 436.8 328 67.4
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 1.9e-120 436.4 327 67.6
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 5.6e-120 434.9 327 67.9
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 1.6e-119 433.3 329 67.8
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 2.1e-119 433.0 280 77.5
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.8e-119 432.6 327 67.9
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 8.1e-119 431.0 325 69.8
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 1.4e-118 430.3 327 67.3
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 4.0e-118 428.7 327 66.7
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 4.0e-118 428.7 331 68.3
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 7.5e-117 424.5 328 64.0
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 3.2e-115 419.1 327 66.4
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 3.2e-115 419.1 327 66.4
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 2.1e-114 416.4 330 65.8
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 2.7e-114 416.0 330 65.2
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 2.3e-113 412.9 327 63.9
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 3.0e-113 412.5 327 64.2
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 5.1e-113 411.8 328 64.0
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 1.1e-112 410.6 327 63.0
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 9.5e-112 407.5 327 63.0
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 1.2e-111 407.1 327 64.5
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 2.1e-111 406.4 327 63.3
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 2.8e-111 406.0 324 62.3
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 3.6e-111 405.6 327 62.4
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 6.2e-111 404.8 327 61.5
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 8.1e-111 404.4 327 62.4
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 4.0e-110 402.1 327 62.4
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 6.8e-110 401.4 326 63.2
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 1.5e-109 400.2 327 62.1
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 2.0e-109 399.8 327 60.9
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 1.1e-107 394.0 327 63.6
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.1e-107 394.0 327 63.3
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 9.2e-107 391.0 324 60.8
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 1.2e-106 390.6 337 59.1
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.1e-106 389.8 317 63.4
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 1.3e-105 387.1 273 70.7
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 9.6e-104 380.9 327 60.9
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 8.1e-103 377.9 323 61.6
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 6.2e-95 351.7 327 56.0
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 1.8e-94 350.1 330 57.3
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 6.4e-92 341.7 329 58.7
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 1.5e-88 330.5 322 55.3
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 5.3e-86 322.0 322 51.6
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 9.0e-86 321.2 277 61.4
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 1.4e-83 313.9 319 53.3
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 3.2e-83 312.8 324 52.8
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 2.1e-82 310.1 326 57.1
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 6.0e-82 308.5 329 52.0
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.3e-81 307.4 319 53.3
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 6.7e-81 305.1 329 52.3
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 1.5e-77 293.9 325 47.4
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 1.7e-76 290.4 176 79.5
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 9.6e-72 274.6 197 71.1
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 7.6e-69 265.0 186 74.2
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 5.0e-68 262.3 286 45.1
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 6.3e-63 245.4 215 59.5
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 9.1e-62 241.5 272 51.1
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 8.5e-60 235.0 196 63.8
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 2.0e-56 223.8 288 43.8
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 2.6e-56 223.4 141 73.0
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 3.4e-53 213.0 158 64.6
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 4.5e-53 212.6 329 42.6
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 5.9e-53 212.2 183 60.7
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 7.4e-48 195.3 133 69.2
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 6.3e-47 192.2 131 69.5
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 3.8e-44 183.0 151 63.6
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.1e-43 181.4 140 67.9
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 1.5e-43 181.0 139 61.9
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 3.2e-43 179.9 270 41.1
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.7e-42 176.8 131 64.9
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 2.3e-41 173.7 128 65.6
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 3.0e-41 173.3 179 52.0
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 1.3e-39 167.9 262 38.9
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 1.8e-38 164.1 117 68.4
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 7.0e-38 162.2 93 78.5
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 2.7e-37 160.2 263 37.6
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 1.4e-33 147.9 199 44.7
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 4.0e-33 146.4 147 55.1
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 1.2e-32 144.8 146 50.7
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.1e-30 138.3 153 45.1
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 1.6e-29 134.4 82 73.2
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 1.0e-28 131.7 131 48.1
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 2.5e-27 127.1 175 41.7
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.6e-26 124.4 128 51.6
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 6.8e-25 119.0 196 41.3
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 4.4e-24 116.3 117 48.7
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 2.7e-21 107.1 68 73.5
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 1.2e-18 98.2 75 66.7
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 1.2e-18 98.2 75 66.7
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 3.0e-17 93.6 75 65.3
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 4.6e-13 79.7 60 70.0
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 8.6e-12 75.5 121 41.3
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 5.2e-09 66.2 57 68.4
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 1.5e-08 64.7 58 58.6


User provided reference genes

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