Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023849.2 Cucumis melo HOM05D000104 ORTHO05D003467 8.5e-60 233.4 113 100.0
MELO3C016973.2 Cucumis melo HOM05D000104 ORTHO05D003467 6.8e-33 144.1 72 97.2
CsaV3_4G036700 Cucumis sativus L. HOM05D000104 ORTHO05D003467 6.8e-33 144.1 72 97.2
ClCG05G016460 Citrullus lanatus HOM05D000104 ORTHO05D003467 5.7e-32 141.0 72 94.4
Sed0013682 Sechium edule HOM05D000104 ORTHO05D003467 3.5e-29 131.7 72 88.9
Lj1g0020904 Lotus japonicus HOM05D000104 ORTHO05D003467 1.5e-27 126.3 72 83.3
MD08G1058800 Malus domestica HOM05D000104 ORTHO05D003467 1.5e-27 126.3 72 83.3
Sed0022321 Sechium edule HOM05D000104 ORTHO05D003467 1.9e-27 125.9 72 84.7
Gohir.D13G187900 Gossypium hirsutum HOM05D000104 ORTHO05D003467 2.5e-27 125.6 72 81.9
Gorai.010G244100 Gossypium raimondii HOM05D000104 ORTHO05D003467 2.5e-27 125.6 72 81.9
MD15G1037700 Malus domestica HOM05D000104 ORTHO05D003467 2.5e-27 125.6 72 83.3
CiPaw.08G007100 Carya illinoinensis HOM05D000104 ORTHO05D003467 5.6e-27 124.4 72 79.2
Potri.006G262200 Populus trichocarpa HOM05D000104 ORTHO05D003467 5.6e-27 124.4 72 79.2
Prupe.1G391600 Prunus persica HOM05D000104 ORTHO05D003467 5.6e-27 124.4 72 80.6
QL02p019684 Quercus lobata HOM05D000104 ORTHO05D003467 5.6e-27 124.4 72 77.8
Rhsim07G0163200 Rhododendron simsii HOM05D000104 ORTHO05D003467 5.6e-27 124.4 72 80.6
RcHm_v2.0_Chr3g0455421 Rosa chinensis HOM05D000104 ORTHO05D003467 5.6e-27 124.4 72 80.6
Sabra06G0204500 Salix brachista HOM05D000104 ORTHO05D003467 5.6e-27 124.4 72 79.2
Thecc.09G017400 Theobroma cacao HOM05D000104 ORTHO05D003467 7.3e-27 124.0 72 79.2
COL.COLO4_18938 Corchorus olitorius HOM05D000104 ORTHO05D003467 9.5e-27 123.6 87 71.3
Gohir.A13G179800 Gossypium hirsutum HOM05D000104 ORTHO05D003467 1.2e-26 123.2 72 80.6
Haze_21436 Corylus avellana HOM05D000104 ORTHO05D003467 1.6e-26 122.9 72 79.2
RcHm_v2.0_Chr6g0299661 Rosa chinensis HOM05D000104 ORTHO05D003467 2.1e-26 122.5 72 80.6
Cpa.g.sc127.15 Carica papaya HOM05D000104 ORTHO05D003467 2.8e-26 122.1 72 77.8
Duzib150G0247 Durio zibethinus HOM05D000104 ORTHO05D003467 3.6e-26 121.7 72 77.8
Glyma.06G063400 Glycine max HOM05D000104 ORTHO05D003467 3.6e-26 121.7 72 76.4
Ca_15766_v3 Cicer arietinum L. HOM05D000104 ORTHO05D003467 4.7e-26 121.3 72 79.2
FvH4_2g40920 Fragaria vesca HOM05D005818 ORTHO05D003467 4.7e-26 121.3 72 79.2
FAN15G1888 Fragaria x ananassa HOM05D000104 ORTHO05D003467 4.7e-26 121.3 72 79.2
FAN20G2022 Fragaria x ananassa HOM05D000104 ORTHO05D003467 4.7e-26 121.3 72 79.2
FAN27G0005 Fragaria x ananassa HOM05D000104 ORTHO05D003467 4.7e-26 121.3 72 79.2
GSVIVG01035901001 Vitis vinifera HOM05D000104 ORTHO05D003467 4.7e-26 121.3 72 77.8
Manes.03G010400 Manihot esculenta HOM05D000104 ORTHO05D003467 6.1e-26 120.9 72 75.0
Potri.018G021100 Populus trichocarpa HOM05D000104 ORTHO05D003467 6.1e-26 120.9 72 76.4
FAN20G0395 Fragaria x ananassa HOM05D000104 ORTHO05D003467 1.0e-25 120.2 71 80.3
Phvul.009G088700 Phaseolus vulgaris HOM05D000104 ORTHO05D003467 1.0e-25 120.2 72 75.0
VMungo1309G2115 Vigna mungo HOM05D000104 ORTHO05D003467 1.0e-25 120.2 72 75.0
Dinv16472 Davidia involucrata HOM05D000104 ORTHO05D003467 1.8e-25 119.4 72 77.8
Glyma.04G062400 Glycine max HOM05D000104 ORTHO05D003467 1.8e-25 119.4 72 76.4
Psat5g031880 Pisum sativum HOM05D000104 ORTHO05D003467 2.3e-25 119.0 72 77.8
Manes.16G127700 Manihot esculenta HOM05D000104 ORTHO05D003467 3.0e-25 118.6 72 76.4
SGA_v2.0_scaffold20G09081 Striga asiatica HOM05D000104 ORTHO05D003467 3.0e-25 118.6 80 71.2
arahy.Tifrunner.gnm1.ann1.QU94QB Arachis hypogaea HOM05D000104 ORTHO05D003467 5.2e-25 117.9 80 72.5
Migut.A00006 Erythranthe guttata HOM05D000104 ORTHO05D003467 5.2e-25 117.9 72 79.2
Sabra18G0023400 Salix brachista HOM05D000104 ORTHO05D003467 5.2e-25 117.9 72 73.6
TPR.G3131 Trifolium pratense HOM05D000104 ORTHO05D003467 5.2e-25 117.9 72 76.4
TWI63G1656 Tripterygium wilfordii HOM05D000104 ORTHO05D003467 5.2e-25 117.9 72 73.6
MSTRG.11592 Avicennia marina HOM05D000104 ORTHO05D003467 6.8e-25 117.5 72 77.8
THA.LOC104803635 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 1.5e-24 116.3 72 75.0
Cc08_g00060 Coffea canephora HOM05D000104 ORTHO05D003467 2.0e-24 115.9 72 79.2
Carub.0004s0475 Capsella rubella HOM05D000104 ORTHO05D003467 3.4e-24 115.2 72 76.4
Gohir.A07G031300 Gossypium hirsutum HOM05D000104 ORTHO05D003467 3.4e-24 115.2 73 76.7
Gohir.D07G035100 Gossypium hirsutum HOM05D000104 ORTHO05D003467 3.4e-24 115.2 73 76.7
Gorai.001G036900 Gossypium raimondii HOM05D000104 ORTHO05D003467 3.4e-24 115.2 73 76.7
THA.LOC104803854 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 4.4e-24 114.8 72 72.2
Atru.chr7.2525 Acer truncatum HOM05D000104 ORTHO05D003467 7.5e-24 114.0 72 75.0
Lalb_Chr23g0268291 Lupinus albus HOM05D000104 ORTHO05D003467 7.5e-24 114.0 72 73.6
Oeu056768.1 Olea europaea HOM05D000104 ORTHO05D003467 7.5e-24 114.0 72 76.4
Sopen06g024260 Solanum pennellii HOM05D000104 ORTHO05D003467 7.5e-24 114.0 72 73.6
Aa31sc100G10 Aethionema arabicum HOM05D000104 ORTHO05D003467 1.3e-23 113.2 72 73.6
Oeu012636.1 Olea europaea HOM05D000104 ORTHO05D003467 1.3e-23 113.2 72 73.6
Peaxi162Scf00632g00012 Petunia axillaris HOM05D000104 ORTHO05D003467 1.3e-23 113.2 72 76.4
CAN.G36.11 Capsicum annuum HOM05D000104 ORTHO05D003467 2.2e-23 112.5 72 73.6
Eucgr.G00556 Eucalyptus grandis HOM05D000104 ORTHO05D003467 2.2e-23 112.5 72 73.6
TWI32G0850 Tripterygium wilfordii HOM05D000104 ORTHO05D003467 2.9e-23 112.1 72 72.2
AL4G16380 Arabidopsis lyrata HOM05D000104 ORTHO05D003467 3.7e-23 111.7 72 75.0
Thhalv10000014m.g Eutrema salsugineum HOM05D000104 ORTHO05D003467 3.7e-23 111.7 72 73.6
PSO384G0886 Papaver somniferum HOM05D000104 ORTHO05D003467 3.7e-23 111.7 73 75.3
CSS0003293 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 4.9e-23 111.3 72 76.4
PSO339G0671 Papaver somniferum HOM05D000104 ORTHO05D003467 4.9e-23 111.3 73 74.0
Nitab4.5_0002973g0050 Nicotiana tabacum HOM05D000104 ORTHO05D003467 6.4e-23 110.9 72 73.6
Solyc06g065730.3 Solanum lycopersicum HOM05D000104 ORTHO05D003467 8.3e-23 110.5 72 72.2
EL10Ac2g04134 Beta vulgaris HOM05D000104 ORTHO05D003467 1.1e-22 110.2 74 73.0
CSS0032982 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 1.1e-22 110.2 72 76.4
CARHR116490 Cardamine hirsuta HOM05D000104 ORTHO05D003467 1.1e-22 110.2 72 73.6
Solyc08g029130.3 Solanum lycopersicum HOM05D000104 ORTHO05D003467 1.1e-22 110.2 72 75.0
Sopen08g010020 Solanum pennellii HOM05D000104 ORTHO05D003467 1.1e-22 110.2 72 75.0
AT2G25170 Arabidopsis thaliana HOM05D000104 ORTHO05D003467 1.4e-22 109.8 72 73.6
AUR62031587 Chenopodium quinoa HOM05D000104 ORTHO05D003467 1.4e-22 109.8 74 73.0
Sp4g04150 Schrenkiella parvula HOM05D000104 ORTHO05D003467 1.4e-22 109.8 72 72.2
BcaB08g35151 Brassica carinata HOM05D000104 ORTHO05D003467 2.4e-22 109.0 72 72.2
BcaC07g40886 Brassica carinata HOM05D000104 ORTHO05D003467 2.4e-22 109.0 72 72.2
A09p55830 Brassica napus HOM05D000104 ORTHO05D003467 2.4e-22 109.0 72 72.2
C08p38830 Brassica napus HOM05D000104 ORTHO05D003467 2.4e-22 109.0 72 72.2
BolC8t51453H Brassica oleracea HOM05D000104 ORTHO05D003467 2.4e-22 109.0 72 72.2
BraA09t40986Z Brassica rapa HOM05D000104 ORTHO05D003467 2.4e-22 109.0 72 72.2
Hund03464 Selenicereus undatus HOM05D000104 ORTHO05D003467 3.2e-22 108.6 103 59.2
Ah.10g035570 Amaranthus hybridus HOM05D000104 ORTHO05D003467 4.1e-22 108.2 74 70.3
Sc09g0010480 Simmondsia chinensis HOM05D000104 ORTHO05D003467 4.1e-22 108.2 72 72.2
Ah.16g104930 Amaranthus hybridus HOM05D000104 ORTHO05D003467 5.4e-22 107.8 74 71.6
AUR62012463 Chenopodium quinoa HOM05D000104 ORTHO05D003467 5.4e-22 107.8 74 71.6
Nitab4.5_0000486g0110 Nicotiana tabacum HOM05D000104 ORTHO05D003467 5.4e-22 107.8 72 73.6
Glyma.17G217300 Glycine max HOM05D000104 ORTHO05D003467 7.0e-22 107.5 72 69.4
Lalb_Chr24g0402041 Lupinus albus HOM05D000104 ORTHO05D003467 7.0e-22 107.5 72 68.1
Medtr3g106210 Medicago truncatula HOM05D000104 ORTHO05D003467 9.2e-22 107.1 72 73.6
Nitab4.5_0002503g0110 Nicotiana tabacum HOM05D000104 ORTHO05D003467 1.2e-21 106.7 72 70.8
Nitab4.5_0003811g0020 Nicotiana tabacum HOM05D000104 ORTHO05D003467 1.2e-21 106.7 72 70.8
Hund19597 Selenicereus undatus HOM05D000104 ORTHO05D003467 1.2e-21 106.7 74 75.7
PGR044G1954 Punica granatum HOM05D000104 ORTHO05D003467 1.6e-21 106.3 72 69.4
TAR625G0155 Trochodendron aralioides HOM05D000104 ORTHO05D003467 2.0e-21 105.9 73 74.0
Lsat_1_v5_gn_1_42900 Lactuca sativa HOM05D000104 ORTHO05D003467 2.7e-21 105.5 72 70.8
Lalb_Chr08g0244361 Lupinus albus HOM05D000104 ORTHO05D003467 4.6e-21 104.8 72 69.4
VMungo0647G2573 Vigna mungo HOM05D000104 ORTHO05D003467 4.6e-21 104.8 72 68.1
Nn2g12306 Nelumbo nucifera HOM05D000104 ORTHO05D003467 5.9e-21 104.4 73 68.5
Ciclev10010331m.g Citrus clementina HOM05D000104 ORTHO05D003467 7.8e-21 104.0 58 84.5
HanXRQChr11g0353801 Helianthus annuus HOM05D000104 ORTHO05D003467 7.8e-21 104.0 72 69.4
CAN.G199.65 Capsicum annuum HOM05D000104 ORTHO05D003467 1.0e-20 103.6 72 69.4
DCAR_003002 Daucus carota HOM05D000104 ORTHO05D003467 1.3e-20 103.2 71 73.2
DCAR_007677 Daucus carota HOM05D000104 ORTHO05D003467 1.3e-20 103.2 72 70.8
Ca_13055_v3 Cicer arietinum L. HOM05D000104 ORTHO05D003467 1.7e-20 102.8 72 65.3
Peaxi162Scf00430g00415 Petunia axillaris HOM05D000104 ORTHO05D003467 5.0e-20 101.3 72 69.4
Phvul.001G046100 Phaseolus vulgaris HOM05D000104 ORTHO05D003467 1.1e-19 100.1 72 66.7
HanXRQChr01g0030671 Helianthus annuus HOM05D000104 ORTHO05D003467 1.5e-19 99.8 72 69.4
Rhsim02G0208200 Rhododendron simsii HOM05D000104 ORTHO05D003467 1.9e-19 99.4 72 66.7
vmacro11233 Vaccinium macrocarpon HOM05D000104 ORTHO05D003467 1.9e-19 99.4 72 68.1
Aqoxy2G02630 Aquilegia oxysepala HOM05D000104 ORTHO05D003467 5.6e-19 97.8 73 67.1
Lj7A730T43 Lonicera japonica HOM05D000104 ORTHO05D003467 5.6e-19 97.8 73 65.8
Lalb_Chr22g0361401 Lupinus albus HOM05D000104 ORTHO05D003467 5.6e-19 97.8 72 65.3
Pp3c18_19040 Physcomitrium patens HOM05D000104 ORTHO05D003467 2.3e-17 92.4 73 60.3
Pp3c18_19045 Physcomitrium patens HOM05D000104 ORTHO05D003467 2.3e-17 92.4 73 60.3
Medtr1g013190 Medicago truncatula HOM05D000104 ORTHO05D003467 3.1e-17 92.0 72 63.9
A01p06320 Brassica napus HOM05D000104 ORTHO05D003467 4.0e-17 91.7 72 62.5
BolC1t00694H Brassica oleracea HOM05D000104 ORTHO05D003467 4.0e-17 91.7 72 62.5
BraA01t00598Z Brassica rapa HOM05D000104 ORTHO05D003467 4.0e-17 91.7 72 62.5
Pp3c21_10800 Physcomitrium patens HOM05D000104 ORTHO05D003467 4.0e-17 91.7 73 60.3
BcaC09g51983 Brassica carinata HOM05D000104 ORTHO05D003467 8.9e-17 90.5 72 61.1
C01p06980 Brassica napus HOM05D000104 ORTHO05D003467 8.9e-17 90.5 72 61.1
ATR1153G016 Amborella trichopoda HOM05D000104 ORTHO05D003467 2.0e-16 89.4 74 62.2
ECA248G2891 Erigeron canadensis HOM05D000104 ORTHO05D003467 2.0e-16 89.4 73 64.4
Sp7g29720 Schrenkiella parvula HOM05D000104 ORTHO05D003467 2.6e-16 89.0 72 61.1
BolC1t00695H Brassica oleracea HOM05D000104 ORTHO05D003467 3.4e-16 88.6 72 61.1
C01p07000 Brassica napus HOM05D000104 ORTHO05D003467 4.4e-16 88.2 72 61.1
BcaC09g51981 Brassica carinata HOM05D000104 ORTHO05D003467 9.8e-16 87.0 72 59.7
A01p06340 Brassica napus HOM05D000104 ORTHO05D003467 2.2e-15 85.9 72 59.7
BraA01t00599Z Brassica rapa HOM05D000104 ORTHO05D003467 2.2e-15 85.9 72 59.7
SEGI_33990 Sequoiadendron giganteum HOM05D000104 ORTHO05D003467 2.9e-15 85.5 75 58.7
Psat6g027200 Pisum sativum HOM05D000104 ORTHO05D003467 3.7e-15 85.1 74 59.5
HPP92_004609 Vanilla planifolia HOM05D000104 ORTHO05D003467 3.7e-15 85.1 142 40.1
Thhalv10027006m.g Eutrema salsugineum HOM05D000104 ORTHO05D003467 4.9e-15 84.7 72 63.9
SMO228G0183 Selaginella moellendorffii HOM05D000104 ORTHO05D003467 4.9e-15 84.7 72 59.7
SEGI_27514 Sequoiadendron giganteum HOM05D000104 ORTHO05D003467 2.4e-14 82.4 76 56.6
TPR.G38867 Trifolium pratense HOM05D000104 ORTHO05D003467 1.6e-13 79.7 72 54.2
SMO200G0085 Selaginella moellendorffii HOM05D000104 ORTHO05D003467 4.6e-13 78.2 72 52.8
Mapoly0010s0012 Marchantia polymorpha HOM05D000104 ORTHO05D003467 3.9e-12 75.1 75 50.7
AagrBONN_evm.TU.Sc2ySwM_344.1528 Anthoceros agrestis HOM05D000104 ORTHO05D003467 5.0e-12 74.7 72 52.8
AL7G20000 Arabidopsis lyrata HOM05D000104 ORTHO05D003467 7.3e-11 70.9 72 52.8
MELO3C029162.2 Cucumis melo HOM05D002224 ORTHO05D002446 6.2e-10 67.8 31 100.0
Carub.0007s0864 Capsella rubella HOM05D000104 ORTHO05D003467 1.1e-09 67.0 72 52.8
CBR_g16815 Chara braunii HOM05D000104 ORTHO05D003467 1.8e-09 66.2 98 41.8
A03p61110 Brassica napus HOM05D000104 ORTHO05D003467 1.2e-08 63.5 72 44.4
BraA03t15150Z Brassica rapa HOM05D000104 ORTHO05D003467 1.2e-08 63.5 72 44.4
BolC7t46345H Brassica oleracea HOM05D000104 ORTHO05D003467 9.9e-08 60.5 72 43.1
TPR.G38898 Trifolium pratense HOM05D000104 ORTHO05D003467 9.9e-08 60.5 59 50.8
C07p58980 Brassica napus HOM05D000104 ORTHO05D003467 3.7e-07 58.5 72 41.7
Pp3c13_19680 Physcomitrium patens HOM05D000104 ORTHO05D006385 2.4e-06 55.8 76 44.7
AT4G31900 Arabidopsis thaliana HOM05D000104 ORTHO05D003467 5.4e-06 54.7 72 40.3


User provided reference genes

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