Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 6.2e-136 487.6 280 100.0
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 1.7e-133 479.6 280 92.1
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 1.5e-118 429.9 287 82.2
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 3.5e-107 392.1 288 75.0
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 2.1e-104 382.9 290 72.8
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 6.2e-104 381.3 288 72.2
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 1.1e-103 380.6 288 73.3
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 1.1e-103 380.6 287 73.2
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 3.1e-103 379.0 280 74.3
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 4.0e-103 378.6 281 74.0
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 3.4e-102 375.6 281 74.7
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 3.4e-102 375.6 288 72.2
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 3.4e-102 375.6 288 72.2
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 7.6e-102 374.4 288 71.5
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 1.0e-101 374.0 287 72.5
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 2.9e-101 372.5 286 71.7
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 3.8e-101 372.1 288 71.2
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 4.9e-101 371.7 265 74.0
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 1.1e-100 370.5 288 70.5
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 1.9e-100 369.8 286 71.3
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 2.5e-100 369.4 279 72.4
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 7.1e-100 367.9 288 70.5
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 9.3e-100 367.5 288 70.5
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 9.3e-100 367.5 288 70.8
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 2.1e-99 366.3 288 70.1
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 2.7e-99 365.9 288 71.2
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 4.6e-99 365.2 288 70.1
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 1.8e-98 363.2 288 69.8
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 1.8e-98 363.2 281 71.9
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 2.3e-98 362.8 290 69.7
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 2.3e-98 362.8 281 70.8
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 3.0e-98 362.5 288 69.4
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 1.9e-97 359.8 287 70.0
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 2.5e-97 359.4 288 69.1
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 3.3e-97 359.0 288 69.4
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 4.3e-97 358.6 288 69.8
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 9.7e-97 357.5 288 70.1
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 1.6e-96 356.7 288 69.4
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 1.6e-96 356.7 280 69.3
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 2.2e-96 356.3 286 69.9
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 2.2e-96 356.3 288 69.1
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 3.7e-96 355.5 290 69.3
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 1.1e-95 354.0 287 69.3
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 1.8e-95 353.2 289 69.2
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 2.4e-95 352.8 294 66.0
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 3.1e-95 352.4 289 68.2
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 4.1e-95 352.1 286 69.6
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 5.3e-95 351.7 287 68.6
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 9.0e-95 350.9 269 78.4
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 1.2e-94 350.5 287 77.0
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 2.6e-94 349.4 279 69.2
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 1.7e-93 346.7 286 66.1
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 2.2e-93 346.3 302 66.2
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 2.9e-93 345.9 279 68.1
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 2.9e-93 345.9 277 69.3
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 3.8e-93 345.5 278 69.8
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 5.0e-93 345.1 278 71.2
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 6.5e-93 344.7 292 66.8
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 8.5e-93 344.4 286 67.5
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 1.4e-92 343.6 279 68.5
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 2.5e-92 342.8 239 76.2
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 5.5e-92 341.7 250 72.4
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 5.5e-92 341.7 287 68.6
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 9.4e-92 340.9 289 67.1
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 1.6e-91 340.1 279 65.9
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 2.1e-91 339.7 280 73.6
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 2.1e-91 339.7 288 65.3
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 2.7e-91 339.3 239 77.8
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 2.7e-91 339.3 278 70.9
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 3.6e-91 339.0 239 75.3
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 4.6e-91 338.6 239 75.3
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 4.6e-91 338.6 281 75.1
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 6.1e-91 338.2 239 75.7
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 6.1e-91 338.2 239 75.7
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 1.4e-90 337.0 239 75.3
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 1.8e-90 336.7 286 65.4
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 2.0e-89 333.2 266 69.2
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 3.3e-89 332.4 314 62.4
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 9.7e-89 330.9 288 63.9
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 9.7e-89 330.9 282 65.6
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 2.2e-88 329.7 261 69.3
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 2.8e-88 329.3 261 70.5
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 2.8e-88 329.3 261 70.5
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 2.8e-88 329.3 300 62.0
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 8.2e-88 327.8 280 65.4
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 1.1e-87 327.4 279 64.9
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 1.4e-87 327.0 261 69.7
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 1.4e-87 327.0 261 69.7
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 2.0e-86 323.2 252 71.8
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 2.0e-86 323.2 285 63.5
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 2.6e-86 322.8 266 70.3
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 2.6e-86 322.8 289 65.7
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 3.4e-86 322.4 281 63.7
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 3.4e-86 322.4 266 68.4
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 5.9e-86 321.6 266 69.9
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 1.7e-85 320.1 266 68.0
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 3.8e-85 318.9 266 69.9
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 8.5e-85 317.8 241 69.3
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 8.5e-85 317.8 257 65.8
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 5.5e-84 315.1 285 61.1
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 1.1e-81 307.4 286 64.0
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 2.2e-80 303.1 256 69.1
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 1.5e-78 297.0 287 59.6
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 4.2e-76 288.9 260 62.3
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 6.7e-74 281.6 260 62.7
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 1.1e-73 280.8 257 64.2
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 1.3e-72 277.3 266 57.5
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 9.1e-71 271.2 213 71.4
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 9.1e-71 271.2 283 56.5
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 3.5e-70 269.2 280 57.1
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 4.2e-68 262.3 246 60.2
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 7.2e-68 261.5 271 55.0
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 1.0e-66 257.7 153 85.6
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 2.3e-66 256.5 153 84.3
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 1.5e-65 253.8 286 53.8
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 3.1e-63 246.1 288 57.3
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 9.8e-57 224.6 166 72.9
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 1.7e-56 223.8 257 49.8
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 1.2e-54 217.6 204 55.9
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 1.6e-54 217.2 125 88.8
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 2.7e-54 216.5 220 58.6
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.5e-49 200.7 153 71.9
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 2.9e-45 186.4 195 57.4
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.9e-45 186.4 166 65.1
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 6.6e-45 185.3 153 62.1
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 1.1e-44 184.5 189 58.7
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 4.7e-43 179.1 166 62.7
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 4.0e-42 176.0 166 61.4
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 1.2e-38 164.5 236 48.7
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.6e-35 154.1 105 75.2
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 1.5e-28 131.0 67 92.5
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 3.1e-26 123.2 277 36.1
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 1.1e-20 104.8 73 71.2
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 3.1e-18 96.7 105 66.7
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 5.2e-18 95.9 140 45.7
RcHm_v2.0_Chr4g0427471 Rosa chinensis HOM05D000753 ORTHO05D006719 2.3e-13 80.5 137 43.8
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 3.0e-13 80.1 137 44.5
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 5.6e-12 75.9 42 85.7
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 4.0e-10 69.7 173 34.1
CBR_g3778 Chara braunii HOM05D005498 ORTHO05D006719 4.2e-07 59.7 47 66.0
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 1.6e-06 57.8 76 53.9


User provided reference genes

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