Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017678.2 Cucumis melo HOM05D006139 ORTHO05D007681 0.0e+00 1329.3 676 100.0
CsaV3_4G003770 Cucumis sativus L. HOM05D006139 ORTHO05D007681 0.0e+00 1212.6 627 98.2
Sed0017452 Sechium edule HOM05D006139 ORTHO05D007681 0.0e+00 1125.9 627 89.2
Potri.011G107400 Populus trichocarpa HOM05D006139 ORTHO05D007681 2.7e-286 988.4 628 77.5
Hma1.2p1_0412F.1_g147150 Hydrangea macrophylla HOM05D006139 ORTHO05D007681 2.3e-285 985.3 629 77.3
GSVIVG01031668001 Vitis vinifera HOM05D006139 ORTHO05D007681 9.3e-279 963.4 628 76.8
CSS0045945 Camellia sinensis var. sinensis HOM05D006139 ORTHO05D007681 3.5e-278 961.4 629 75.5
Ciclev10019318m.g Citrus clementina HOM05D006139 ORTHO05D007681 1.0e-277 959.9 627 75.6
Sabra11G0095200 Salix brachista HOM05D006139 ORTHO05D007681 2.3e-277 958.7 636 75.2
Prupe.1G178000 Prunus persica HOM05D006139 ORTHO05D007681 3.9e-277 958.0 629 75.0
QL10p044141 Quercus lobata HOM05D006139 ORTHO05D007681 2.1e-275 952.2 662 72.5
CANSAT11G1108 Cannabis sativa HOM05D006139 ORTHO05D007681 2.0e-273 945.7 628 74.7
Manes.03G099000 Manihot esculenta HOM05D006139 ORTHO05D007681 9.9e-273 943.3 629 73.6
Sopen09g036170 Solanum pennellii HOM05D006139 ORTHO05D007681 3.8e-272 941.4 629 73.4
TWI38G2388 Tripterygium wilfordii HOM05D006139 ORTHO05D007681 3.8e-272 941.4 628 74.5
Eucgr.F03241 Eucalyptus grandis HOM05D006139 ORTHO05D007681 8.4e-272 940.3 628 73.9
MD13G1278700 Malus domestica HOM05D006139 ORTHO05D007681 1.4e-271 939.5 630 73.3
Solyc09g098230.3 Solanum lycopersicum HOM05D006139 ORTHO05D007681 1.9e-271 939.1 629 73.3
RcHm_v2.0_Chr4g0409801 Rosa chinensis HOM05D006139 ORTHO05D007681 6.7e-269 930.6 628 73.1
Aqoxy2G03950 Aquilegia oxysepala HOM05D006139 ORTHO05D007681 1.5e-268 929.5 630 73.7
Lalb_Chr06g0164661 Lupinus albus HOM05D006139 ORTHO05D007681 1.5e-268 929.5 630 72.4
TAR365G1167 Trochodendron aralioides HOM05D006139 ORTHO05D007681 2.1e-267 925.6 609 75.2
CiPaw.01G108300 Carya illinoinensis HOM05D006139 ORTHO05D007681 3.7e-267 924.9 629 74.4
Cc03_g10570 Coffea canephora HOM05D006139 ORTHO05D007681 6.2e-267 924.1 628 71.8
Thecc.07G123700 Theobroma cacao HOM05D006139 ORTHO05D007681 3.1e-266 921.8 629 71.9
Duzib213G0841 Durio zibethinus HOM05D006139 ORTHO05D007681 5.3e-266 921.0 629 72.7
Migut.N00440 Erythranthe guttata HOM05D006139 ORTHO05D007681 4.5e-265 917.9 628 72.5
Sc22g0003230 Simmondsia chinensis HOM05D006139 ORTHO05D007681 6.5e-264 914.1 627 72.9
Glyma.20G248800 Glycine max HOM05D006139 ORTHO05D007681 8.4e-264 913.7 635 72.3
arahy.Tifrunner.gnm1.ann1.46LBLY Arachis hypogaea HOM05D006139 ORTHO05D007681 1.2e-262 909.8 627 71.9
Rhsim07G0086500 Rhododendron simsii HOM05D006139 ORTHO05D007681 1.0e-261 906.7 720 65.4
Gohir.A01G052100 Gossypium hirsutum HOM05D006139 ORTHO05D007681 1.8e-261 906.0 628 72.0
PSO675G6876 Papaver somniferum HOM05D006139 ORTHO05D007681 8.7e-261 903.7 627 70.7
Gorai.002G052100 Gossypium raimondii HOM05D006139 ORTHO05D007681 3.3e-260 901.7 628 71.7
Lj5g0023092 Lotus japonicus HOM05D006139 ORTHO05D007681 4.8e-259 897.9 627 70.8
PSO017G2886 Papaver somniferum HOM05D006139 ORTHO05D007681 4.8e-259 897.9 627 70.7
ECA246G3778 Erigeron canadensis HOM05D006139 ORTHO05D007681 1.1e-258 896.7 630 70.5
Lsat_1_v5_gn_3_24941 Lactuca sativa HOM05D006139 ORTHO05D007681 2.4e-258 895.6 628 69.6
MSTRG.17865 Avicennia marina HOM05D006139 ORTHO05D007681 2.6e-257 892.1 629 70.3
Psat6g243280 Pisum sativum HOM05D006139 ORTHO05D007681 3.4e-257 891.7 628 69.4
FvH4_4g12150 Fragaria vesca HOM05D006139 ORTHO05D007681 1.7e-256 889.4 628 69.3
FAN12G2778 Fragaria x ananassa HOM05D006139 ORTHO05D007681 5.0e-256 887.9 628 69.1
SGA_v2.0_scaffold109G31142 Striga asiatica HOM05D006139 ORTHO05D007681 1.4e-255 886.3 633 69.0
VMungo0720G1636 Vigna mungo HOM05D006139 ORTHO05D007681 1.9e-255 885.9 630 70.2
Nn3g20967 Nelumbo nucifera HOM05D006139 ORTHO05D007681 6.7e-253 877.5 609 71.3
Phvul.007G001600 Phaseolus vulgaris HOM05D006139 ORTHO05D007681 8.8e-253 877.1 629 70.1
PGR031G2404 Punica granatum HOM05D006139 ORTHO05D007681 3.7e-251 871.7 629 68.2
Medtr1g116980 Medicago truncatula HOM05D006139 ORTHO05D007681 5.9e-249 864.4 626 68.2
Zm00001eb116810 Zea mays HOM05D006139 ORTHO05D007681 8.5e-248 860.5 630 66.0
ClCG07G016640 Citrullus lanatus HOM05D006139 ORTHO05D007681 1.9e-247 859.4 656 73.5
Hund19684 Selenicereus undatus HOM05D006139 ORTHO05D007681 4.2e-247 858.2 627 69.2
C05p15280 Brassica napus HOM05D006139 ORTHO05D007681 3.6e-246 855.1 628 66.7
Sp1g15110 Schrenkiella parvula HOM05D006139 ORTHO05D007681 3.6e-246 855.1 628 67.0
BcaC05g25552 Brassica carinata HOM05D006139 ORTHO05D007681 4.7e-246 854.7 628 66.4
Thhalv10007085m.g Eutrema salsugineum HOM05D006139 ORTHO05D007681 1.4e-245 853.2 628 66.7
AT1G16970 Arabidopsis thaliana HOM05D006139 ORTHO05D007681 5.1e-245 851.3 629 67.1
Carub.0001s1670 Capsella rubella HOM05D006139 ORTHO05D007681 1.5e-244 849.7 627 66.8
Gohir.D01G041500 Gossypium hirsutum HOM05D006139 ORTHO05D007681 3.3e-244 848.6 589 71.6
BcaB02g06659 Brassica carinata HOM05D006139 ORTHO05D007681 1.3e-243 846.7 628 65.8
A06p12870 Brassica napus HOM05D006139 ORTHO05D007681 1.7e-243 846.3 628 65.9
THA.LOC104812308 Tarenaya hassleriana HOM05D006139 ORTHO05D007681 4.1e-242 841.6 627 66.8
CARHR017480 Cardamine hirsuta HOM05D006139 ORTHO05D007681 1.2e-241 840.1 629 66.5
CAN.G710.40 Capsicum annuum HOM05D006139 ORTHO05D007681 9.1e-234 813.9 643 65.6
arahy.Tifrunner.gnm1.ann1.JAL8JD Arachis hypogaea HOM05D006139 ORTHO05D007681 2.6e-233 812.4 637 65.8
FAN12G0395 Fragaria x ananassa HOM05D006139 ORTHO05D007681 5.9e-233 811.2 639 64.5
FAN07G2792 Fragaria x ananassa HOM05D006139 ORTHO05D007681 7.7e-233 810.8 638 64.1
FAN17G0552 Fragaria x ananassa HOM05D006139 ORTHO05D007681 2.2e-232 809.3 627 64.9
AUR62018029 Chenopodium quinoa HOM05D006139 ORTHO05D007681 3.8e-232 808.5 648 65.0
ATR0609G005 Amborella trichopoda HOM05D006139 ORTHO05D007681 5.0e-232 808.1 632 63.8
BolC5t30234H Brassica oleracea HOM05D006139 ORTHO05D007681 5.5e-231 804.7 631 63.7
BraA06t24447Z Brassica rapa HOM05D006139 ORTHO05D007681 1.0e-229 800.4 628 63.5
Lj4A728T41 Lonicera japonica HOM05D006139 ORTHO05D007681 3.4e-228 795.4 586 69.6
Dinv44237 Davidia involucrata HOM05D006139 ORTHO05D007681 1.8e-226 789.6 494 77.5
COL.COLO4_17513 Corchorus olitorius HOM05D006139 ORTHO05D007681 4.1e-226 788.5 645 64.2
vmacro13984 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 5.7e-220 768.1 740 57.8
AUR62003718 Chenopodium quinoa HOM05D006139 ORTHO05D007681 1.2e-217 760.4 611 64.3
Haze_11079 Corylus avellana HOM05D006139 ORTHO05D007681 1.6e-214 750.0 629 64.7
MBI07_g00628_MAGBIO Magnolia biondii HOM05D006139 ORTHO05D007681 2.2e-211 739.6 628 61.5
Nitab4.5_0001687g0050 Nicotiana tabacum HOM05D006139 ORTHO05D007681 2.8e-206 722.6 591 62.6
Nitab4.5_0001526g0130 Nicotiana tabacum HOM05D006139 ORTHO05D007681 1.2e-201 707.2 645 58.8
Peaxi162Scf00286g00443 Petunia axillaris HOM05D006139 ORTHO05D007681 4.4e-196 688.7 629 58.8
Mapoly0113s0020 Marchantia polymorpha HOM05D006139 ORTHO05D007681 4.9e-179 632.1 631 52.3
Oeu013397.2 Olea europaea HOM05D006139 ORTHO05D007681 2.1e-174 616.7 427 71.7
HPP92_015930 Vanilla planifolia HOM05D006139 ORTHO05D007681 1.9e-159 567.0 437 64.3
SMO361G0769 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 2.8e-158 563.1 568 48.8
SMO361G0513 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 3.7e-158 562.8 569 49.2
AagrBONN_evm.TU.Sc2ySwM_228.1556 Anthoceros agrestis HOM05D006139 ORTHO05D007681 2.6e-148 530.0 637 46.0
CDE02G2779 Ceratophyllum demersum HOM05D006139 ORTHO05D007681 3.0e-144 516.5 441 60.5
Cpa.g.sc77.50 Carica papaya HOM05D006139 ORTHO05D007681 4.5e-140 502.7 550 51.8
CBR_g19434 Chara braunii HOM05D006139 ORTHO05D007681 7.2e-138 495.4 628 43.2
Pp3c18_7140 Physcomitrium patens HOM05D006139 ORTHO05D007681 6.7e-136 488.8 624 42.9
Atru.chr2.2053 Acer truncatum HOM05D006139 ORTHO05D007681 1.7e-131 474.2 306 76.8
Aa31LG7G1410 Aethionema arabicum HOM05D006139 ORTHO05D007681 2.2e-131 473.8 628 45.1
PGSC0003DMG400014069 Solanum tuberosum HOM05D006139 ORTHO05D007681 1.4e-120 438.0 290 74.5
Atru.chr2.2052 Acer truncatum HOM05D006139 ORTHO05D007681 1.3e-118 431.4 269 79.2
SHI27652 Sapria himalayana HOM05D006139 ORTHO05D007681 9.1e-117 425.2 357 62.2
TPR.G8879 Trifolium pratense HOM05D006139 ORTHO05D007681 1.7e-115 421.0 295 70.8
TPR.G8868 Trifolium pratense HOM05D006139 ORTHO05D007681 1.2e-113 414.8 286 69.6
Ca_11423_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 1.0e-91 342.0 244 69.3
DCAR_005496 Daucus carota HOM05D006139 ORTHO05D007681 1.7e-86 324.7 232 71.6
TPR.G8907 Trifolium pratense HOM05D006139 ORTHO05D007681 1.9e-85 321.2 225 69.8
SEGI_35314 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 5.4e-85 319.7 248 62.5
DCAR_005495 Daucus carota HOM05D006139 ORTHO05D007681 2.8e-81 307.4 245 65.3
unitig_578.g15953 Utricularia gibba HOM05D006139 ORTHO05D007681 2.2e-70 271.2 248 55.2
Cre13.g607500 Chlamydomonas reinhardtii HOM05D006139 ORTHO05D007681 3.5e-60 237.3 713 29.3
Os07g0184900 Oryza sativa ssp. japonica HOM05D006139 ORTHO05D007681 8.7e-59 232.6 158 70.3
Ah.03g143030 Amaranthus hybridus HOM05D006139 ORTHO05D007681 1.6e-57 228.4 177 67.2
FAN22G0061 Fragaria x ananassa HOM05D006139 ORTHO05D007681 1.4e-53 215.3 166 65.7
unitig_578.g15954 Utricularia gibba HOM05D006139 ORTHO05D004041 1.6e-52 211.8 174 61.5
Cfa021664 Carpinus fangiana HOM05D006139 ORTHO05D007681 1.6e-49 201.8 618 30.3
Ca_11425_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 1.4e-48 198.7 134 72.4
Hund20183 Selenicereus undatus HOM05D006139 ORTHO05D007681 1.5e-47 195.3 189 57.7
arahy.Tifrunner.gnm1.ann1.6RHH59 Arachis hypogaea HOM05D006139 ORTHO05D007681 2.1e-44 184.9 133 69.2
CANSAT78G0600 Cannabis sativa HOM05D006139 ORTHO05D007681 7.1e-37 159.8 118 69.5
Ca_11424_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 3.3e-34 151.0 105 67.6
AUR62043732 Chenopodium quinoa HOM05D006139 ORTHO05D007681 2.5e-29 134.8 92 69.6
MCO14G338 Micromonas commoda HOM05D006139 ORTHO05D007681 8.5e-22 109.8 545 24.2
SEGI_31905 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 1.6e-20 105.5 73 64.4
Ah.03g143010 Amaranthus hybridus HOM05D006139 ORTHO05D007681 6.7e-19 100.1 125 43.2
BolC4t22161H Brassica oleracea HOM05D006139 ORTHO05D007681 2.2e-17 95.1 84 59.5
CARHR154100 Cardamine hirsuta HOM05D006139 ORTHO05D007681 5.3e-16 90.5 66 66.7
HanXRQChr13g0406711 Helianthus annuus HOM05D006139 ORTHO05D007681 9.1e-16 89.7 57 68.4
Zm00001eb114470 Zea mays HOM05D006139 ORTHO05D007681 1.0e-14 86.3 65 64.6
Potri.006G132501 Populus trichocarpa HOM05D006139 ORTHO05D007681 2.5e-13 81.6 77 54.5
Eucgr.L02132 Eucalyptus grandis HOM05D006139 ORTHO05D007681 1.6e-12 79.0 48 77.1
SEGI_11325 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 1.6e-12 79.0 65 53.8
vmacro12608 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 1.6e-12 79.0 64 64.1
Dinv25612 Davidia involucrata HOM05D000447 ORTHO05D007681 1.4e-08 65.9 80 48.8


User provided reference genes

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