Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G022780 Citrullus lanatus HOM05D006044 ORTHO05D007653 2.0e-65 252.3 126 100.0
MELO3C014555.2 Cucumis melo HOM05D006044 ORTHO05D007653 2.0e-65 252.3 126 100.0
Medtr5g089300 Medicago truncatula HOM05D006044 ORTHO05D007653 1.7e-61 239.2 126 96.0
Cpa.g.sc157.53 Carica papaya HOM05D006044 ORTHO05D007653 2.3e-61 238.8 126 96.0
Glyma.02G278800 Glycine max HOM05D006044 ORTHO05D007653 2.3e-61 238.8 126 96.0
Phvul.008G202000 Phaseolus vulgaris HOM05D006044 ORTHO05D007653 2.3e-61 238.8 126 96.0
VMungo0647G0704 Vigna mungo HOM05D006044 ORTHO05D007653 2.3e-61 238.8 126 96.0
Glyma.14G035900 Glycine max HOM05D006044 ORTHO05D007653 2.9e-61 238.4 126 95.2
Psat2g020640 Pisum sativum HOM05D006044 ORTHO05D007653 5.0e-61 237.7 126 95.2
LjContig00564g0010691 Lotus japonicus HOM05D006044 ORTHO05D007653 1.1e-60 236.5 124 96.0
Manes.01G177500 Manihot esculenta HOM05D006044 ORTHO05D007653 1.1e-60 236.5 126 94.4
TAR633G2719 Trochodendron aralioides HOM05D006044 ORTHO05D007653 1.1e-60 236.5 126 95.2
Atru.chr3.2998 Acer truncatum HOM05D006044 ORTHO05D007653 1.5e-60 236.1 126 94.4
arahy.Tifrunner.gnm1.ann1.6RB8S0 Arachis hypogaea HOM05D006044 ORTHO05D007653 1.5e-60 236.1 126 94.4
arahy.Tifrunner.gnm1.ann1.L4QR06 Arachis hypogaea HOM05D006044 ORTHO05D007653 1.5e-60 236.1 126 94.4
TPR.G16400 Trifolium pratense HOM05D006044 ORTHO05D007653 1.5e-60 236.1 124 95.2
Ca_11896_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 1.9e-60 235.7 126 93.7
Lalb_Chr10g0106211 Lupinus albus HOM05D006044 ORTHO05D007653 2.5e-60 235.3 126 94.4
Lalb_Chr17g0347851 Lupinus albus HOM05D006044 ORTHO05D007653 2.5e-60 235.3 126 94.4
Nn7g36759 Nelumbo nucifera HOM05D006044 ORTHO05D007653 2.5e-60 235.3 126 94.4
THA.LOC104811201 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 3.3e-60 235.0 126 93.7
Ca_06201_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 4.2e-60 234.6 126 93.7
CANSAT11G0073 Cannabis sativa HOM05D006044 ORTHO05D007653 5.6e-60 234.2 124 94.4
THA.LOC104799136 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 5.6e-60 234.2 126 93.7
CSS0014603 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 9.5e-60 233.4 126 92.9
Nitab4.5_0000069g0030 Nicotiana tabacum HOM05D006044 ORTHO05D007653 9.5e-60 233.4 126 92.9
Nitab4.5_0011609g0020 Nicotiana tabacum HOM05D006044 ORTHO05D007653 9.5e-60 233.4 126 92.9
Thecc.09G247200 Theobroma cacao HOM05D006044 ORTHO05D007653 1.6e-59 232.6 126 92.9
FvH4_4g01940 Fragaria vesca HOM05D006044 ORTHO05D007653 2.1e-59 232.3 126 92.1
FAN12G1761 Fragaria x ananassa HOM05D006044 ORTHO05D007653 2.1e-59 232.3 126 92.1
FAN22G1152 Fragaria x ananassa HOM05D006044 ORTHO05D007653 2.1e-59 232.3 126 92.1
Prupe.1G400800 Prunus persica HOM05D006044 ORTHO05D007653 2.1e-59 232.3 126 93.7
GSVIVG01037329001 Vitis vinifera HOM05D006044 ORTHO05D007653 2.1e-59 232.3 127 94.5
Peaxi162Scf00021g02522 Petunia axillaris HOM05D006044 ORTHO05D007653 2.8e-59 231.9 126 92.9
ATR0763G184 Amborella trichopoda HOM05D006044 ORTHO05D007653 4.7e-59 231.1 126 92.9
COL.COLO4_24488 Corchorus olitorius HOM05D006044 ORTHO05D007653 4.7e-59 231.1 126 92.1
Gohir.A13G218400 Gossypium hirsutum HOM05D006044 ORTHO05D007653 6.1e-59 230.7 126 92.1
Gohir.D13G222100 Gossypium hirsutum HOM05D006044 ORTHO05D007653 6.1e-59 230.7 126 92.1
Gorai.013G253200 Gossypium raimondii HOM05D006044 ORTHO05D007653 6.1e-59 230.7 126 92.1
PGR102G0082 Punica granatum HOM05D006044 ORTHO05D007653 6.1e-59 230.7 126 92.1
Lsat_1_v5_gn_2_28381 Lactuca sativa HOM05D006044 ORTHO05D007653 8.0e-59 230.3 124 91.9
Lsat_1_v5_gn_2_111680 Lactuca sativa HOM05D006044 ORTHO05D007653 1.0e-58 229.9 124 91.9
Prupe.1G025000 Prunus persica HOM05D006044 ORTHO05D007653 1.4e-58 229.6 126 91.3
RcHm_v2.0_Chr4g0388901 Rosa chinensis HOM05D006044 ORTHO05D007653 1.4e-58 229.6 126 90.5
Aa31LG3G15040 Aethionema arabicum HOM05D006044 ORTHO05D007653 1.8e-58 229.2 126 91.3
MD08G1047500 Malus domestica HOM05D006044 ORTHO05D007653 1.8e-58 229.2 126 92.1
Potri.001G273200 Populus trichocarpa HOM05D006044 ORTHO05D007653 1.8e-58 229.2 124 92.7
QL01p016848 Quercus lobata HOM05D006044 ORTHO05D007653 1.8e-58 229.2 125 90.4
Sc12g0010240 Simmondsia chinensis HOM05D006044 ORTHO05D007653 1.8e-58 229.2 126 91.3
Ciclev10017186m.g Citrus clementina HOM05D006044 ORTHO05D007653 2.3e-58 228.8 126 91.3
Eucgr.B03747 Eucalyptus grandis HOM05D006044 ORTHO05D007653 3.0e-58 228.4 126 91.3
Oeu032567.1 Olea europaea HOM05D006044 ORTHO05D007653 3.0e-58 228.4 129 89.9
PSO339G3702 Papaver somniferum HOM05D006044 ORTHO05D007653 3.0e-58 228.4 126 92.1
PSO384G3308 Papaver somniferum HOM05D006044 ORTHO05D007653 3.0e-58 228.4 126 92.1
SEGI_07566 Sequoiadendron giganteum HOM05D006044 ORTHO05D007653 3.0e-58 228.4 126 92.1
HanXRQChr14g0453721 Helianthus annuus HOM05D006044 ORTHO05D007653 4.0e-58 228.0 124 91.1
CDE09G0744 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 6.8e-58 227.3 125 90.4
Cc03_g11600 Coffea canephora HOM05D006044 ORTHO05D007653 6.8e-58 227.3 128 90.6
HanXRQChr07g0196181 Helianthus annuus HOM05D006044 ORTHO05D007653 6.8e-58 227.3 124 91.1
TWI75G0655 Tripterygium wilfordii HOM05D006044 ORTHO05D007653 1.2e-57 226.5 126 90.5
Solyc01g008360.3 Solanum lycopersicum HOM05D006044 ORTHO05D007653 1.5e-57 226.1 126 91.3
Sopen01g003880 Solanum pennellii HOM05D006044 ORTHO05D007653 1.5e-57 226.1 126 91.3
PGSC0003DMG400016393 Solanum tuberosum HOM05D006044 ORTHO05D007653 1.5e-57 226.1 126 91.3
SalBow8G2527 Salvia bowleyana HOM05D006044 ORTHO05D007653 5.7e-57 224.2 122 90.2
unitig_27.g25012 Utricularia gibba HOM05D006044 ORTHO05D007653 5.7e-57 224.2 129 88.4
MBI19_g20794_MAGBIO Magnolia biondii HOM05D006044 ORTHO05D007653 1.3e-56 223.0 126 91.3
SalBow1G1993 Salvia bowleyana HOM05D006044 ORTHO05D000010 1.3e-56 223.0 115 93.0
A03p05430 Brassica napus HOM05D006044 ORTHO05D007653 1.7e-56 222.6 126 88.9
C03p06320 Brassica napus HOM05D006044 ORTHO05D007653 1.7e-56 222.6 126 88.9
BolC3t13140H Brassica oleracea HOM05D006044 ORTHO05D007653 1.7e-56 222.6 126 88.9
BraA03t09881Z Brassica rapa HOM05D006044 ORTHO05D007653 1.7e-56 222.6 126 88.9
Potri.009G067500 Populus trichocarpa HOM05D006044 ORTHO05D007653 1.7e-56 222.6 122 90.2
Sabra09G0050500 Salix brachista HOM05D006044 ORTHO05D007653 1.7e-56 222.6 124 87.1
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 2.9e-56 221.9 126 88.9
Thhalv10015024m.g Eutrema salsugineum HOM05D006044 ORTHO05D007653 2.9e-56 221.9 126 88.1
A10p25610 Brassica napus HOM05D006044 ORTHO05D007653 3.7e-56 221.5 126 88.1
BraA10t44628Z Brassica rapa HOM05D006044 ORTHO05D007653 3.7e-56 221.5 126 88.1
Hma1.2p1_0214F.1_g090800 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 3.7e-56 221.5 127 89.0
Rhsim13G0207900 Rhododendron simsii HOM05D006044 ORTHO05D007653 3.7e-56 221.5 126 88.1
Sp6g31450 Schrenkiella parvula HOM05D006044 ORTHO05D007653 4.9e-56 221.1 126 88.1
Cfa009890 Carpinus fangiana HOM05D006044 ORTHO05D007653 6.4e-56 220.7 126 88.9
Haze_23252 Corylus avellana HOM05D006044 ORTHO05D007653 6.4e-56 220.7 126 88.9
Migut.N02377 Erythranthe guttata HOM05D006044 ORTHO05D007653 6.4e-56 220.7 130 85.4
SGA_v2.0_scaffold310G48206 Striga asiatica HOM05D006044 ORTHO05D007653 6.4e-56 220.7 129 86.8
SGA_v2.0_scaffold3G01443 Striga asiatica HOM05D006044 ORTHO05D007653 6.4e-56 220.7 129 86.8
Hma1.2p1_1357F.1_g277915 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 8.3e-56 220.3 122 89.3
Ah.05g173120 Amaranthus hybridus HOM05D006044 ORTHO05D007653 1.1e-55 219.9 119 89.9
BcaB01g05427 Brassica carinata HOM05D006044 ORTHO05D007653 1.1e-55 219.9 126 87.3
ECA238G3020 Erigeron canadensis HOM05D006044 ORTHO05D007653 1.1e-55 219.9 123 88.6
CiPaw.14G111700 Carya illinoinensis HOM05D006044 ORTHO05D007653 1.8e-55 219.2 126 88.1
AL6G22970 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 2.4e-55 218.8 126 87.3
AT5G12190 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 2.4e-55 218.8 126 87.3
EL10Ac1g00766 Beta vulgaris HOM05D006044 ORTHO05D007653 2.4e-55 218.8 119 89.9
EL10Ac5g12840 Beta vulgaris HOM05D006044 ORTHO05D007653 2.4e-55 218.8 119 89.9
CDE08G0916 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 2.4e-55 218.8 126 88.9
AUR62013740 Chenopodium quinoa HOM05D006044 ORTHO05D007653 2.4e-55 218.8 119 89.9
AUR62023411 Chenopodium quinoa HOM05D006044 ORTHO05D007653 2.4e-55 218.8 119 89.9
AagrBONN_evm.TU.Sc2ySwM_117.1592 Anthoceros agrestis HOM05D006044 ORTHO05D007653 3.2e-55 218.4 126 85.7
Aqoxy2G00401 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 4.1e-55 218.0 126 88.9
Mapoly0207s0011 Marchantia polymorpha HOM05D006044 ORTHO05D007653 5.4e-55 217.6 119 89.1
Nn017s41474 Nelumbo nucifera HOM05D006044 ORTHO05D007653 9.2e-55 216.9 117 93.2
Carub.0006s1069 Capsella rubella HOM05D006044 ORTHO05D007653 1.2e-54 216.5 126 86.5
unitig_699.g19149 Utricularia gibba HOM05D006044 ORTHO05D007653 1.2e-54 216.5 129 86.8
HPP92_019149 Vanilla planifolia HOM05D006044 ORTHO05D007653 2.0e-54 215.7 120 90.0
Dinv09443 Davidia involucrata HOM05D006044 ORTHO05D007653 1.3e-53 213.0 117 90.6
Pp3c1_15740 Physcomitrium patens HOM05D006044 ORTHO05D007653 1.7e-53 212.6 120 86.7
Ca_07394_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 3.9e-53 211.5 126 86.5
Dinv37467 Davidia involucrata HOM05D006044 ORTHO05D007653 3.9e-53 211.5 117 89.7
CBR_g501 Chara braunii HOM05D006044 ORTHO05D007653 6.6e-53 210.7 118 85.6
Zm00001eb062150 Zea mays HOM05D006044 ORTHO05D007653 2.1e-51 205.7 116 85.3
Zm00001eb212190 Zea mays HOM05D006044 ORTHO05D007653 2.8e-51 205.3 116 85.3
BcaNung07015 Brassica carinata HOM05D006044 ORTHO05D007653 6.2e-51 204.1 116 87.9
Os03g0811700 Oryza sativa ssp. japonica HOM05D006044 ORTHO05D007653 6.2e-51 204.1 123 82.9
CARHR200930 Cardamine hirsuta HOM05D006044 ORTHO05D007653 4.0e-50 201.4 119 82.4
SMO143G0133 Selaginella moellendorffii HOM05D006044 ORTHO05D007653 3.2e-47 191.8 117 80.3
CSS0031497 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 7.0e-47 190.7 140 72.1
Aqoxy2G00402 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 9.2e-47 190.3 126 73.0
AL3G46680 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 3.5e-46 188.3 116 76.7
MD13G1049300 Malus domestica HOM05D006044 ORTHO05D007653 3.0e-45 185.3 106 85.8
Cre03.g158950 Chlamydomonas reinhardtii HOM05D006044 ORTHO05D007653 1.8e-42 176.0 113 74.3
MCO15G700 Micromonas commoda HOM05D006044 ORTHO05D007653 9.2e-39 163.7 93 82.8
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 6.0e-38 161.0 86 90.7
EL10Ac9g21533 Beta vulgaris HOM05D006044 ORTHO05D007653 5.6e-36 154.5 91 84.6
PRCOL_00006242 Prasinoderma coloniale HOM05D006044 ORTHO05D007653 6.4e-32 141.0 113 57.5
Haze_26695 Corylus avellana HOM05D006044 ORTHO05D007653 3.3e-28 128.6 109 51.4
AT2G14870 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 4.2e-23 111.7 70 71.4
SGA_v2.0_scaffold34G13906 Striga asiatica HOM05D006044 ORTHO05D007653 5.1e-21 104.8 103 53.4
SGA_v2.0_scaffold5G02950 Striga asiatica HOM05D006044 ORTHO05D007653 1.9e-15 86.3 77 59.7
SalBow1G3729 Salvia bowleyana HOM05D006044 ORTHO05D357234 1.0e-13 80.5 37 97.3
Pp3c14_2340 Physcomitrium patens HOM05D006044 ORTHO05D318821 1.1e-07 60.5 31 87.1
COL.COLO4_11167 Corchorus olitorius HOM05D002411 ORTHO05D002564 1.9e-07 59.7 90 35.6
MBI14_g02603_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 1.9e-07 59.7 127 35.4
MBI14_g23541_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 1.9e-07 59.7 124 35.5
SGA_v2.0_scaffold198G41064 Striga asiatica HOM05D006044 ORTHO05D400222 1.9e-07 59.7 85 41.2
Gorai.003G183300 Gossypium raimondii HOM05D000142 ORTHO05D003173 4.2e-07 58.5 84 36.9
Sed0014227 Sechium edule HOM05D000604 ORTHO05D004856 9.3e-07 57.4 107 34.6
Cc09_g04940 Coffea canephora HOM05D000604 ORTHO05D004856 1.2e-06 57.0 83 38.6
Duzib150G0537 Durio zibethinus HOM05D002411 ORTHO05D002564 1.2e-06 57.0 75 37.3
Duzib168G0560 Durio zibethinus HOM05D002411 ORTHO05D002564 1.2e-06 57.0 75 37.3
Thecc.09G359100 Theobroma cacao HOM05D002411 ORTHO05D002564 1.2e-06 57.0 75 37.3
MBI16_g24360_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 1.6e-06 56.6 107 32.7
PGR102G3118 Punica granatum HOM05D002411 ORTHO05D002564 1.6e-06 56.6 80 41.2
Gohir.A03G000053 Gossypium hirsutum HOM05D000142 ORTHO05D003173 2.1e-06 56.2 84 35.7
CANSAT56G2059 Cannabis sativa HOM05D000604 ORTHO05D004856 3.5e-06 55.5 83 34.9
Cre01.g024200 Chlamydomonas reinhardtii HOM05D004266 ORTHO05D005151 3.5e-06 55.5 88 30.7
Glyma.14G115100 Glycine max HOM05D005326 ORTHO05D006734 3.5e-06 55.5 99 31.3
Lalb_Chr19g0132151 Lupinus albus HOM05D000604 ORTHO05D004856 3.5e-06 55.5 99 30.3
Aqoxy1G01640 Aquilegia oxysepala HOM05D005326 ORTHO05D006734 4.6e-06 55.1 95 31.6
Aqoxy2G00917 Aquilegia oxysepala HOM05D005326 ORTHO05D006734 4.6e-06 55.1 95 31.6
Gohir.A03G024900 Gossypium hirsutum HOM05D002411 ORTHO05D002564 4.6e-06 55.1 75 36.0
Gohir.D03G172600 Gossypium hirsutum HOM05D000142 ORTHO05D003173 4.6e-06 55.1 82 34.1
AL4G25110 Arabidopsis lyrata HOM05D002411 ORTHO05D002564 6.0e-06 54.7 89 34.8
Gohir.D03G143600 Gossypium hirsutum HOM05D002411 ORTHO05D002564 6.0e-06 54.7 75 36.0
Gorai.003G150900 Gossypium raimondii HOM05D002411 ORTHO05D002564 6.0e-06 54.7 75 36.0
GSVIVG01012163001 Vitis vinifera HOM05D000604 ORTHO05D004856 6.0e-06 54.7 83 34.9
MELO3C016321.2 Cucumis melo HOM05D000604 ORTHO05D004856 7.9e-06 54.3 107 32.7
Migut.B01297 Erythranthe guttata HOM05D000604 ORTHO05D004856 7.9e-06 54.3 77 39.0
Nn1g08454 Nelumbo nucifera HOM05D000604 ORTHO05D004856 7.9e-06 54.3 107 30.8
Potri.005G024600 Populus trichocarpa HOM05D001413 ORTHO05D001385 7.9e-06 54.3 64 43.8
SMO276G0012 Selaginella moellendorffii HOM05D003264 ORTHO05D003276 7.9e-06 54.3 92 29.3
SGA_v2.0_scaffold146G36114 Striga asiatica HOM05D002411 ORTHO05D002564 7.9e-06 54.3 80 36.2


User provided reference genes

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