Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 2.0e-245 852.0 440 100.0
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 2.2e-236 822.0 440 96.1
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 1.6e-218 762.7 441 89.1
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 2.0e-181 639.4 457 76.8
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 3.9e-177 625.2 442 69.9
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 5.1e-177 624.8 447 69.4
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 2.1e-175 619.4 435 70.8
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 1.1e-174 617.1 442 70.1
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 1.8e-174 616.3 447 70.7
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 5.3e-174 614.8 447 69.8
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 2.9e-172 609.0 439 68.8
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 8.4e-172 607.4 437 70.3
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.6e-170 603.2 440 68.4
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 2.1e-170 602.8 442 68.6
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 2.1e-170 602.8 451 69.2
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 3.5e-170 602.1 427 71.9
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 4.6e-170 601.7 444 70.5
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 4.6e-170 601.7 439 68.8
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 7.9e-170 600.9 441 67.8
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 7.9e-170 600.9 439 68.8
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.5e-168 596.7 440 68.4
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 1.5e-168 596.7 448 69.2
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 2.5e-168 595.9 432 70.4
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 2.1e-167 592.8 444 69.6
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 3.7e-167 592.0 464 65.9
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 3.7e-167 592.0 464 65.9
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 4.8e-167 591.7 454 67.2
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.4e-166 590.1 444 69.4
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 5.3e-166 588.2 444 68.9
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 5.3e-166 588.2 443 67.0
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 2.0e-165 586.3 444 69.8
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 2.6e-165 585.9 440 68.0
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 4.5e-165 585.1 444 68.9
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 5.8e-165 584.7 444 66.9
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 2.9e-164 582.4 440 67.5
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 1.4e-163 580.1 441 67.8
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 2.5e-163 579.3 444 68.0
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 3.2e-163 578.9 441 67.8
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.2e-163 578.9 439 67.4
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.2e-163 578.9 449 65.9
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 1.6e-162 576.6 450 68.2
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.7e-162 575.9 444 67.8
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 3.5e-162 575.5 426 69.7
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 5.1e-161 571.6 442 67.4
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 6.7e-161 571.2 439 66.5
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 8.7e-161 570.9 445 65.6
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 5.7e-160 568.2 429 68.3
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 9.7e-160 567.4 448 65.6
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 2.8e-159 565.8 437 67.7
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 6.3e-159 564.7 446 66.8
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 6.3e-159 564.7 428 67.8
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 6.3e-159 564.7 441 65.5
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 1.1e-158 563.9 446 65.7
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 2.4e-158 562.8 434 66.8
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 3.1e-158 562.4 450 64.9
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 9.0e-158 560.8 444 64.4
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 2.6e-157 559.3 428 67.3
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 3.4e-157 558.9 428 67.1
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 5.9e-157 558.1 454 64.1
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 5.9e-157 558.1 430 67.7
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 1.0e-156 557.4 428 66.6
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 2.9e-156 555.8 441 64.6
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 1.4e-155 553.5 435 66.7
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 1.4e-155 553.5 449 65.3
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 3.2e-155 552.4 428 66.6
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 3.2e-155 552.4 429 66.2
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 4.2e-155 552.0 443 65.7
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 2.7e-154 549.3 440 65.2
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 3.9e-153 545.4 428 65.9
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 1.7e-151 540.0 433 64.9
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 1.4e-150 537.0 430 66.3
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 4.1e-150 535.4 430 66.0
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 6.9e-150 534.6 432 63.4
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 1.5e-149 533.5 405 68.4
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 2.0e-149 533.1 430 66.0
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 2.2e-148 529.6 440 62.5
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 3.8e-148 528.9 440 65.2
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 2.7e-146 522.7 496 59.3
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 1.0e-145 520.8 431 63.6
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 3.0e-145 519.2 450 61.3
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 3.7e-143 512.3 436 64.7
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 1.2e-141 507.3 454 59.3
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 1.5e-141 506.9 449 60.1
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 5.5e-139 498.4 403 65.5
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 9.4e-139 497.7 440 60.7
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 1.8e-137 493.4 536 52.1
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 4.4e-136 488.8 428 59.6
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 1.3e-135 487.3 441 58.0
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 8.2e-135 484.6 467 57.6
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 1.4e-134 483.8 427 60.0
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 2.4e-134 483.0 415 60.5
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 1.7e-132 476.9 415 59.3
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 1.9e-131 473.4 413 63.4
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 2.3e-129 466.5 447 55.7
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 1.2e-128 464.2 347 69.5
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 1.2e-128 464.2 275 89.8
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 2.1e-122 443.4 443 55.1
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 2.3e-121 439.9 268 79.9
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 1.7e-116 423.7 355 63.7
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 1.9e-115 420.2 452 54.4
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 1.8e-113 413.7 268 75.7
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 6.8e-113 411.8 425 52.5
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 8.9e-113 411.4 247 81.0
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 9.2e-110 401.4 422 51.7
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 7.8e-109 398.3 253 77.1
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 7.8e-109 398.3 332 62.3
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 6.6e-108 395.2 398 52.5
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 3.1e-105 386.3 424 52.4
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 2.0e-101 373.6 415 50.8
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 8.0e-98 361.7 229 75.5
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 1.7e-92 344.0 486 43.2
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 5.6e-91 339.0 304 61.5
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 6.2e-90 335.5 364 52.2
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 4.1e-86 322.8 319 58.6
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 4.8e-74 282.7 287 58.9
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 3.5e-69 266.5 272 55.1
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 7.3e-67 258.8 274 50.0
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 3.1e-65 253.4 241 56.0
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 1.2e-61 241.5 247 56.7
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 7.4e-59 232.3 387 40.6
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 3.7e-58 229.9 210 59.0
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 1.8e-57 227.6 425 35.1
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 3.8e-55 219.9 215 56.7
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 7.4e-51 205.7 258 46.5
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 1.4e-49 201.4 197 54.8
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 1.4e-49 201.4 138 65.9
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 1.3e-47 194.9 255 42.4
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.1e-38 165.2 106 77.4
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 1.4e-38 164.9 169 52.1
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 1.0e-36 158.7 86 86.0
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 6.7e-36 156.0 98 78.6
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 1.2e-32 145.2 87 78.2
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 6.1e-29 132.9 87 67.8
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 1.4e-28 131.7 74 82.4
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 3.3e-27 127.1 265 33.2
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 1.1e-25 122.1 86 68.6
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.2e-21 108.6 188 42.0
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 1.2e-21 108.6 79 69.6
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 2.0e-16 91.3 92 53.3
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 2.0e-16 91.3 69 69.6
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 7.7e-16 89.4 188 37.2
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 2.9e-15 87.4 65 64.6
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.0e-12 79.0 73 54.8
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 2.3e-12 77.8 81 53.1
arahy.Tifrunner.gnm1.ann1.638LQB Arachis hypogaea HOM05D000561 ORTHO05D000514 3.5e-08 63.9 36 83.3
TWI15G0704 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 1.1e-06 58.9 44 61.4
Gorai.004G275700 Gossypium raimondii HOM05D005149 ORTHO05D006251 9.4e-06 55.8 57 47.4


User provided reference genes

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