Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1888.6 961 100.0
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1867.4 961 98.8
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1745.7 961 91.7
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1591.2 959 83.6
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1590.5 961 83.6
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1578.9 959 83.3
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1577.0 962 83.1
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1565.4 966 82.7
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1563.9 960 82.4
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1563.1 959 82.3
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1562.0 985 81.1
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1558.5 914 83.4
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1557.3 960 82.1
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1557.0 962 82.0
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1556.6 964 81.4
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1555.8 958 81.6
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1554.3 913 82.9
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1552.0 962 81.8
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1551.6 966 82.6
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1551.2 913 83.1
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1550.8 960 82.5
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1550.8 960 81.9
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1550.4 962 81.4
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1548.9 957 80.9
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1547.7 960 82.2
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1546.2 962 81.2
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1545.0 963 81.2
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1544.6 958 81.1
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1544.3 958 81.5
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1542.3 962 81.8
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1540.8 958 80.7
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1540.8 960 81.6
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1539.2 960 81.4
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1537.3 958 81.3
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1536.9 962 80.5
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1536.2 961 81.2
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1535.8 954 81.9
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1535.8 959 82.3
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1535.0 959 81.3
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1534.6 962 81.3
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1534.6 913 82.1
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1534.2 958 81.2
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1531.5 966 81.7
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1531.5 960 81.2
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1530.8 959 80.8
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1530.4 960 80.3
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1526.1 959 80.7
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1526.1 963 81.6
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1525.4 962 81.0
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1525.0 970 80.7
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1524.6 961 80.3
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1521.9 959 80.5
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1518.4 961 80.4
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1516.1 964 79.3
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1511.9 959 79.2
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1510.0 975 78.6
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1506.9 962 78.9
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1503.8 960 79.1
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1499.6 966 80.2
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1499.2 968 80.2
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1497.6 954 79.6
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1493.0 961 79.9
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1491.5 960 77.5
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1491.5 922 79.6
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1489.6 960 77.4
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1486.1 962 79.2
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1484.5 968 78.8
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1481.8 960 78.5
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1476.1 944 76.0
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1475.3 963 78.6
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1472.6 963 78.3
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1468.0 915 77.9
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1463.7 962 77.0
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1463.7 929 78.5
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1461.4 991 75.4
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1454.9 921 76.0
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1454.1 969 77.3
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1453.3 1175 66.3
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1447.6 982 76.3
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1446.0 975 75.7
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1446.0 965 76.7
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1444.5 985 76.2
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1444.5 969 77.1
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1444.5 985 76.2
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1439.1 972 76.0
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1437.6 920 77.2
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1431.8 960 77.7
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1430.6 952 76.5
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1429.1 958 75.7
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1428.3 968 75.4
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1427.5 960 76.4
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1427.2 960 76.2
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1424.8 973 74.8
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1422.9 981 75.0
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1421.0 984 74.6
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1418.7 957 74.9
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1410.6 910 78.9
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1408.7 830 81.9
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1392.5 846 80.0
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1392.1 957 72.3
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1384.4 964 71.0
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1378.6 958 72.9
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1378.2 959 70.7
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1375.5 969 74.2
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1365.9 925 73.2
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1352.0 921 73.0
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1328.5 912 70.8
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1306.2 956 69.5
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1305.0 918 71.5
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1285.0 786 82.3
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1270.0 788 79.7
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 0.0e+00 1240.7 722 90.0
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1231.5 728 82.3
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1224.2 926 64.8
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1179.1 943 63.1
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1174.8 786 72.4
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1153.7 686 82.2
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1133.6 984 60.4
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 0.0e+00 1123.6 985 58.6
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 0.0e+00 1092.0 933 58.7
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 0.0e+00 1090.1 958 60.6
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 5.3e-288 994.6 661 76.2
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 3.1e-280 968.8 783 60.9
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 5.7e-274 948.0 674 73.9
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 6.0e-263 911.4 591 78.2
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.2e-252 877.1 559 75.8
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 6.6e-246 854.7 524 80.0
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 2.8e-236 822.8 599 69.6
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 2.1e-223 780.0 500 75.8
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 4.2e-208 729.2 443 86.0
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.5e-184 650.2 386 81.6
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.4e-179 633.6 410 81.0
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 8.3e-172 608.6 1036 37.5
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 8.9e-150 535.4 413 63.9
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 3.0e-145 520.4 415 62.9
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 8.3e-140 502.3 821 38.0
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 3.7e-132 476.9 253 94.5
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 5.4e-123 446.4 483 53.4
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.9e-112 411.4 254 79.5
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 4.9e-108 396.7 225 85.8
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 1.5e-104 385.2 279 67.7
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 9.0e-102 375.9 1054 26.9
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.2e-98 365.5 836 32.4
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 2.2e-92 344.7 266 63.5
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 2.2e-92 344.7 266 63.5
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 2.0e-85 321.6 365 43.8
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 2.6e-80 304.7 246 65.9
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 5.4e-54 217.2 150 72.0
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.6e-53 215.7 241 51.9
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 9.5e-51 206.5 169 53.3
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 4.7e-50 204.1 162 59.3
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 4.7e-50 204.1 162 59.3
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 2.8e-47 194.9 152 59.9
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 5.0e-44 184.1 118 72.9
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 7.3e-43 180.3 179 51.4
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 5.7e-40 170.6 141 53.9
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 8.3e-39 166.8 109 77.1
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 1.8e-38 165.6 111 72.1
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 7.0e-38 163.7 99 78.8
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 1.2e-37 162.9 152 58.6
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 4.0e-33 147.9 98 75.5
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 6.8e-33 147.1 76 86.8
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.0e-32 145.6 76 85.5
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.6e-32 145.2 75 88.0
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 4.4e-32 144.4 150 50.0
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.4e-32 144.4 76 85.5
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 5.8e-32 144.1 88 79.5
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.9e-30 139.0 78 80.8
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.4e-30 138.7 74 85.1
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 2.7e-29 135.2 118 55.9
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 5.0e-28 131.0 607 23.2
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 1.6e-26 125.9 109 52.3
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 6.2e-26 124.0 162 47.5
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 6.8e-25 120.6 127 49.6
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.2e-24 119.8 65 86.2
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.2e-21 109.8 130 48.5
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 8.4e-15 87.0 82 56.1
CSS0019611 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D019539 3.0e-12 78.6 131 39.7
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 4.3e-11 74.7 58 65.5
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 1.1e-09 70.1 46 63.0
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 9.0e-09 67.0 179 31.8
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 1.7e-07 62.8 42 66.7


User provided reference genes

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