Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1050300 Malus domestica HOM05D003161 ORTHO05D005173 1.6e-225 785.8 405 100.0
MD12G1051100 Malus domestica HOM05D003161 ORTHO05D005173 1.6e-177 626.3 451 76.9
Prupe.7G085700 Prunus persica HOM05D003161 ORTHO05D005173 1.2e-172 610.1 451 73.8
FAN05G0820 Fragaria x ananassa HOM05D003161 ORTHO05D005173 2.7e-164 582.4 451 71.2
FAN05G2723 Fragaria x ananassa HOM05D003161 ORTHO05D005173 2.7e-164 582.4 451 71.2
FAN14G4107 Fragaria x ananassa HOM05D003161 ORTHO05D005173 2.3e-163 579.3 451 70.7
FAN09G2861 Fragaria x ananassa HOM05D003161 ORTHO05D005173 3.9e-163 578.6 451 70.5
FvH4_6g21470 Fragaria vesca HOM05D003161 ORTHO05D005173 5.0e-163 578.2 451 70.5
RcHm_v2.0_Chr3g0478661 Rosa chinensis HOM05D003161 ORTHO05D005173 7.3e-162 574.3 450 69.8
TWI53G1521 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 8.3e-158 560.8 443 67.9
FAN02G0008 Fragaria x ananassa HOM05D003161 ORTHO05D005173 4.6e-156 555.1 439 69.7
QL07p025506 Quercus lobata HOM05D003161 ORTHO05D005173 9.5e-154 547.4 445 67.4
GSVIVG01033430001 Vitis vinifera HOM05D003161 ORTHO05D005173 2.8e-153 545.8 441 65.5
Gorai.006G145100 Gossypium raimondii HOM05D003161 ORTHO05D005173 1.4e-152 543.5 452 65.0
Gohir.D09G126300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 4.0e-152 542.0 452 64.8
Gohir.A09G130300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 1.2e-151 540.4 452 64.4
Duzib128G1871 Durio zibethinus HOM05D003161 ORTHO05D005173 2.6e-151 539.3 450 64.0
Manes.09G040300 Manihot esculenta HOM05D003161 ORTHO05D005173 9.9e-151 537.3 443 65.2
Potri.016G062600 Populus trichocarpa HOM05D003161 ORTHO05D005173 9.9e-151 537.3 443 64.6
Ciclev10013867m.g Citrus clementina HOM05D003161 ORTHO05D005173 8.3e-150 534.3 480 61.7
Thecc.05G180200 Theobroma cacao HOM05D003161 ORTHO05D005173 1.4e-149 533.5 450 64.7
Sabra16G0064500 Salix brachista HOM05D003161 ORTHO05D005173 2.1e-148 529.6 443 63.9
CANSAT64G2741 Cannabis sativa HOM05D003161 ORTHO05D005173 6.0e-148 528.1 442 64.5
CiPaw.08G134900 Carya illinoinensis HOM05D003161 ORTHO05D005173 1.7e-147 526.6 451 64.1
Haze_20072 Corylus avellana HOM05D003161 ORTHO05D005173 3.9e-147 525.4 450 64.0
Sopen03g011350 Solanum pennellii HOM05D003161 ORTHO05D005173 1.9e-146 523.1 443 63.9
CAN.G479.45 Capsicum annuum HOM05D003161 ORTHO05D005173 9.5e-146 520.8 443 62.1
Actinidia38605 Actinidia chinensis HOM05D003161 ORTHO05D005173 1.1e-144 517.3 449 61.9
TAR633G1132 Trochodendron aralioides HOM05D003161 ORTHO05D005173 6.8e-144 514.6 444 64.0
Cc06_g23250 Coffea canephora HOM05D003161 ORTHO05D005173 1.5e-143 513.5 444 61.9
Rhsim04G0093500 Rhododendron simsii HOM05D003161 ORTHO05D005173 5.8e-143 511.5 440 62.7
PGR004G2129 Punica granatum HOM05D003161 ORTHO05D005173 2.2e-142 509.6 446 62.8
TPR.G14502 Trifolium pratense HOM05D003161 ORTHO05D005173 2.2e-142 509.6 446 61.4
Glyma.02G168900 Glycine max HOM05D003161 ORTHO05D005173 6.4e-142 508.1 443 62.1
Phvul.007G270000 Phaseolus vulgaris HOM05D003161 ORTHO05D005173 1.1e-141 507.3 443 60.9
MSTRG.26730 Avicennia marina HOM05D003161 ORTHO05D005173 1.4e-141 506.9 443 61.4
Migut.K00013 Erythranthe guttata HOM05D003161 ORTHO05D005173 3.2e-141 505.8 442 61.3
Medtr1g054710 Medicago truncatula HOM05D003161 ORTHO05D005173 3.2e-141 505.8 446 61.2
Lalb_Chr21g0316111 Lupinus albus HOM05D003161 ORTHO05D005173 9.2e-141 504.2 443 61.9
Oeu046733.1 Olea europaea HOM05D003161 ORTHO05D005173 1.2e-140 503.8 479 58.0
Atru.chr8.1220 Acer truncatum HOM05D003161 ORTHO05D005173 1.6e-140 503.4 451 62.1
CsaV3_4G031200 Cucumis sativus L. HOM05D003161 ORTHO05D005173 4.6e-140 501.9 451 60.5
SalBow1G2678 Salvia bowleyana HOM05D003161 ORTHO05D005173 1.7e-139 500.0 444 60.8
VMungo0720G1738 Vigna mungo HOM05D003161 ORTHO05D005173 1.7e-139 500.0 443 60.9
Eucgr.A02507 Eucalyptus grandis HOM05D003161 ORTHO05D005173 3.0e-139 499.2 443 60.3
COL.COLO4_29434 Corchorus olitorius HOM05D003161 ORTHO05D005173 3.9e-139 498.8 450 61.6
Glyma.09G104000 Glycine max HOM05D003161 ORTHO05D005173 1.9e-138 496.5 443 61.6
DCAR_016871 Daucus carota HOM05D003161 ORTHO05D005173 3.3e-138 495.7 445 60.2
Aqoxy2G02393 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 7.3e-138 494.6 443 61.4
ECA238G1915 Erigeron canadensis HOM05D003161 ORTHO05D005173 7.3e-138 494.6 444 60.4
Psat6g109960 Pisum sativum HOM05D003161 ORTHO05D005173 7.3e-138 494.6 439 61.0
MELO3C008994.2 Cucumis melo HOM05D003161 ORTHO05D005173 2.1e-137 493.0 451 59.6
PSO339G0479 Papaver somniferum HOM05D003161 ORTHO05D005173 2.1e-137 493.0 444 60.1
Sc19g0006250 Simmondsia chinensis HOM05D003161 ORTHO05D005173 2.1e-137 493.0 444 61.5
Ca_25942_v3 Cicer arietinum L. HOM05D003161 ORTHO05D005173 1.1e-136 490.7 442 60.9
PSO384G1659 Papaver somniferum HOM05D003161 ORTHO05D005173 1.4e-136 490.3 444 59.9
Lj5g0006535 Lotus japonicus HOM05D003161 ORTHO05D005173 1.8e-136 490.0 445 60.9
Cfa020115 Carpinus fangiana HOM05D003161 ORTHO05D005173 2.4e-136 489.6 450 61.3
Solyc03g051900.4 Solanum lycopersicum HOM05D003161 ORTHO05D005173 3.1e-136 489.2 525 53.3
HanXRQChr14g0457761 Helianthus annuus HOM05D003161 ORTHO05D005173 4.0e-136 488.8 443 60.5
Lj2C361G9 Lonicera japonica HOM05D003161 ORTHO05D005173 6.9e-136 488.0 398 64.8
Sed0016761 Sechium edule HOM05D003161 ORTHO05D005173 2.6e-135 486.1 450 59.1
SGA_v2.0_scaffold274G46506 Striga asiatica HOM05D003161 ORTHO05D005173 2.2e-134 483.0 464 57.8
AUR62026957 Chenopodium quinoa HOM05D003161 ORTHO05D005173 1.4e-133 480.3 441 58.5
AUR62041562 Chenopodium quinoa HOM05D003161 ORTHO05D005173 2.4e-133 479.6 441 58.3
CSS0010787 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 6.0e-132 474.9 440 60.7
THA.LOC104826779 Tarenaya hassleriana HOM05D003161 ORTHO05D005173 3.0e-131 472.6 452 58.8
Aa31sc238G10 Aethionema arabicum HOM05D003161 ORTHO05D005173 3.9e-131 472.2 445 59.8
Lsat_1_v5_gn_2_58000 Lactuca sativa HOM05D003161 ORTHO05D005173 2.5e-130 469.5 443 58.9
Sp3g10190 Schrenkiella parvula HOM05D003161 ORTHO05D005173 3.3e-130 469.2 453 58.7
Dinv25021 Davidia involucrata HOM05D003161 ORTHO05D005173 5.6e-130 468.4 442 58.6
arahy.Tifrunner.gnm1.ann1.PL5CUR Arachis hypogaea HOM05D003161 ORTHO05D005173 7.3e-130 468.0 442 59.7
arahy.Tifrunner.gnm1.ann1.S31791 Arachis hypogaea HOM05D003161 ORTHO05D005173 1.6e-129 466.8 442 59.3
Ah.15g091410 Amaranthus hybridus HOM05D003161 ORTHO05D005173 2.1e-129 466.5 443 56.9
BcaC09g48184 Brassica carinata HOM05D003161 ORTHO05D005173 4.0e-128 462.2 441 59.0
Thhalv10019877m.g Eutrema salsugineum HOM05D003161 ORTHO05D005173 1.2e-127 460.7 449 58.1
A05p37390 Brassica napus HOM05D003161 ORTHO05D005173 2.6e-127 459.5 449 57.2
BraA05t22538Z Brassica rapa HOM05D003161 ORTHO05D005173 4.5e-127 458.8 449 57.2
C05p55950 Brassica napus HOM05D003161 ORTHO05D005173 7.6e-127 458.0 449 57.5
BolC5t34262H Brassica oleracea HOM05D003161 ORTHO05D005173 7.6e-127 458.0 449 57.5
CARHR086520 Cardamine hirsuta HOM05D003161 ORTHO05D005173 4.9e-126 455.3 454 55.5
EL10Ac7g16694 Beta vulgaris HOM05D003161 ORTHO05D005173 1.1e-125 454.1 401 59.1
Hund19220 Selenicereus undatus HOM05D003161 ORTHO05D005173 7.1e-125 451.4 539 49.9
BcaB04g21101 Brassica carinata HOM05D003161 ORTHO05D005173 1.6e-124 450.3 449 56.6
AL3G23570 Arabidopsis lyrata HOM05D003161 ORTHO05D005173 3.9e-123 445.7 458 55.2
BraA01t04149Z Brassica rapa HOM05D003161 ORTHO05D005173 6.7e-123 444.9 492 53.5
AT3G11964 Arabidopsis thaliana HOM05D003161 ORTHO05D005173 1.9e-122 443.4 458 54.8
CSS0043330 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 2.5e-122 443.0 445 58.7
Peaxi162Scf00045g00223 Petunia axillaris HOM05D003161 ORTHO05D005173 3.3e-122 442.6 422 57.3
BolC1t05277H Brassica oleracea HOM05D003161 ORTHO05D005173 5.6e-122 441.8 492 53.0
Carub.0003s1130 Capsella rubella HOM05D003161 ORTHO05D005173 8.1e-121 438.0 458 54.4
ATR0737G016 Amborella trichopoda HOM05D003161 ORTHO05D005173 1.3e-118 430.6 453 53.0
CDE02G0114 Ceratophyllum demersum HOM05D003161 ORTHO05D005173 2.6e-111 406.4 443 51.5
HPP92_015879 Vanilla planifolia HOM05D003161 ORTHO05D005173 4.9e-110 402.1 441 52.4
Zm00001eb302830 Zea mays HOM05D003161 ORTHO05D005173 1.4e-104 384.0 392 54.8
Nitab4.5_0001364g0070 Nicotiana tabacum HOM05D003161 ORTHO05D005173 1.8e-104 383.6 337 62.6
unitig_744.g24086 Utricularia gibba HOM05D003161 ORTHO05D005173 3.7e-97 359.4 397 50.6
HPP92_027317 Vanilla planifolia HOM05D003161 ORTHO05D005173 3.8e-94 349.4 397 50.9
vmacro22129 Vaccinium macrocarpon HOM05D003161 ORTHO05D015567 5.5e-85 318.9 275 61.8
SEGI_32968 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 2.8e-81 306.6 374 44.9
Pp3c4_30330 Physcomitrium patens HOM05D003161 ORTHO05D005173 1.1e-77 294.7 483 38.5
Mapoly0019s0051 Marchantia polymorpha HOM05D003161 ORTHO05D005173 2.5e-77 293.5 485 38.4
vmacro22127 Vaccinium macrocarpon HOM05D003161 ORTHO05D005173 9.4e-77 291.6 336 53.9
Hund19218 Selenicereus undatus HOM05D003161 ORTHO05D005173 2.7e-71 273.5 495 38.8
SEGI_22431 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 6.1e-68 262.3 260 51.5
Psat7g030280 Pisum sativum HOM05D003161 ORTHO05D005173 4.0e-67 259.6 268 57.1
AagrBONN_evm.TU.Sc2ySwM_340.243 Anthoceros agrestis HOM05D003161 ORTHO05D005173 7.0e-64 248.8 465 35.1
BcaC05g29306 Brassica carinata HOM05D003161 ORTHO05D005173 1.1e-61 241.5 206 61.7
Cpa.g.sc85.20 Carica papaya HOM05D003161 ORTHO05D005173 7.0e-56 222.2 167 70.7
CBR_g22381 Chara braunii HOM05D003161 ORTHO05D005173 2.3e-54 217.2 512 30.1
SMO137G0021 Selaginella moellendorffii HOM05D003161 ORTHO05D005173 9.8e-42 175.3 417 32.6
Cre10.g428750 Chlamydomonas reinhardtii HOM05D003161 ORTHO05D005173 1.0e-38 165.2 432 31.0
Cpa.g.sc85.24 Carica papaya HOM05D003161 ORTHO05D015567 1.8e-35 154.5 106 74.5
Hund30424 Selenicereus undatus HOM05D003161 ORTHO05D015567 4.1e-32 143.3 106 63.2
CAN.G1433.26 Capsicum annuum HOM05D003161 ORTHO05D015567 7.1e-32 142.5 143 53.8
Nitab4.5_0000571g0080 Nicotiana tabacum HOM05D003161 ORTHO05D015567 2.1e-31 141.0 109 65.1
Nitab4.5_0001364g0080 Nicotiana tabacum HOM05D003161 ORTHO05D015567 4.6e-31 139.8 108 64.8
Hund18985 Selenicereus undatus HOM05D003161 ORTHO05D015567 3.9e-30 136.7 127 55.1
SEGI_29966 Sequoiadendron giganteum HOM05D003161 ORTHO05D015567 3.1e-27 127.1 202 38.1
PRCOL_00005658 Prasinoderma coloniale HOM05D003161 ORTHO05D005173 4.4e-26 123.2 419 28.4
PSO384G3517 Papaver somniferum HOM05D003161 ORTHO05D005173 8.4e-25 119.0 439 28.9
SHI30032 Sapria himalayana HOM05D003161 ORTHO05D015567 1.6e-20 104.8 102 56.9
SHI30031 Sapria himalayana HOM05D003161 ORTHO05D005173 1.1e-19 102.1 100 50.0
vmacro22130 Vaccinium macrocarpon HOM05D003161 ORTHO05D037274 4.0e-19 100.1 89 61.8
Dinv25019 Davidia involucrata HOM05D003161 ORTHO05D015567 3.5e-15 87.0 71 56.3
Cfa023914 Carpinus fangiana HOM05D003161 ORTHO05D005173 1.7e-14 84.7 442 25.3
PSO729G0038 Papaver somniferum HOM05D003161 ORTHO05D037274 2.5e-13 80.9 65 60.0
Aqoxy2G00460 Aquilegia oxysepala HOM05D005887 ORTHO05D007694 4.3e-13 80.1 152 36.8
Hund18981 Selenicereus undatus HOM05D003161 ORTHO05D015567 2.9e-09 67.4 96 41.7


User provided reference genes

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