Gene: PGR004G2129

General Information

Structural Information

  • Species Punica granatum
  • Gene Identifier PGR004G2129
  • Transcript Identifier PGR004G2129.01
  • Gene Type Coding gene
  • Location NC_045131.1 : 2284601-2296508 : positive

Gene Family Information

  • ID HOM05D003161
  • #Genes/#Species 216/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pid XP_031396337.1
  • name LOC116207508
  • name XM_031540477.1
  • id gene-LOC116207508
  • uniprot A0A2I0HML5

Descriptions

  • product rRNA biogenesis protein RRP5, transcript variant X3
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006397
IEA
InterPromRNA processing
GO:0006364
IEA
GOA DatabaserRNA processing
GO:0009553
ISO
PLAZA Integrative Orthologyembryo sac development AT3G11964

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus
GO:0005730
IEA
GOA Databasenucleolus
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT3G11964

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012340 Nucleic acid-binding, OB-fold
IPR003107 HAT (Half-A-TPR) repeat
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR003029 S1 domain
IPR022967 RNA-binding domain, S1
IPR008847 Suppressor of forked
Mapman id Description
17.1.3.2.1.9 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU processome.pre-40S ribosomal subunit nuclear assembly.assembly factor (RRP5)