Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1278700 Malus domestica HOM05D006139 ORTHO05D007681 0.0e+00 1241.1 630 100.0
Prupe.1G178000 Prunus persica HOM05D006139 ORTHO05D007681 0.0e+00 1135.2 629 91.7
RcHm_v2.0_Chr4g0409801 Rosa chinensis HOM05D006139 ORTHO05D007681 6.8e-300 1033.5 628 82.5
Potri.011G107400 Populus trichocarpa HOM05D006139 ORTHO05D007681 3.7e-290 1001.1 628 77.9
Sabra11G0095200 Salix brachista HOM05D006139 ORTHO05D007681 1.9e-286 988.8 636 77.2
QL10p044141 Quercus lobata HOM05D006139 ORTHO05D007681 7.3e-286 986.9 662 75.2
FvH4_4g12150 Fragaria vesca HOM05D006139 ORTHO05D007681 6.2e-285 983.8 628 78.5
FAN12G2778 Fragaria x ananassa HOM05D006139 ORTHO05D007681 1.8e-284 982.2 628 78.3
Hma1.2p1_0412F.1_g147150 Hydrangea macrophylla HOM05D006139 ORTHO05D007681 7.1e-281 970.3 629 76.3
CiPaw.01G108300 Carya illinoinensis HOM05D006139 ORTHO05D007681 1.7e-279 965.7 629 77.3
CSS0045945 Camellia sinensis var. sinensis HOM05D006139 ORTHO05D007681 6.6e-279 963.8 629 76.0
Ciclev10019318m.g Citrus clementina HOM05D006139 ORTHO05D007681 6.6e-279 963.8 628 76.4
Manes.03G099000 Manihot esculenta HOM05D006139 ORTHO05D007681 2.1e-277 958.7 629 74.9
TWI38G2388 Tripterygium wilfordii HOM05D006139 ORTHO05D007681 2.0e-275 952.2 628 74.5
CANSAT11G1108 Cannabis sativa HOM05D006139 ORTHO05D007681 7.6e-275 950.3 631 74.6
GSVIVG01031668001 Vitis vinifera HOM05D006139 ORTHO05D007681 4.9e-274 947.6 628 75.6
Duzib213G0841 Durio zibethinus HOM05D006139 ORTHO05D007681 2.4e-273 945.3 629 74.4
Thecc.07G123700 Theobroma cacao HOM05D006139 ORTHO05D007681 3.9e-271 937.9 629 73.1
Eucgr.F03241 Eucalyptus grandis HOM05D006139 ORTHO05D007681 6.6e-271 937.2 628 72.8
MELO3C017678.2 Cucumis melo HOM05D006139 ORTHO05D007681 3.3e-270 934.9 630 73.3
Gohir.A01G052100 Gossypium hirsutum HOM05D006139 ORTHO05D007681 9.6e-270 933.3 628 73.7
TAR365G1167 Trochodendron aralioides HOM05D006139 ORTHO05D007681 4.8e-269 931.0 609 75.4
Sed0017452 Sechium edule HOM05D006139 ORTHO05D007681 8.1e-269 930.2 628 73.2
Gorai.002G052100 Gossypium raimondii HOM05D006139 ORTHO05D007681 1.1e-268 929.9 628 73.2
CsaV3_4G003770 Cucumis sativus L. HOM05D006139 ORTHO05D007681 2.4e-268 928.7 628 73.4
Sopen09g036170 Solanum pennellii HOM05D006139 ORTHO05D007681 1.3e-266 922.9 630 72.2
Lalb_Chr06g0164661 Lupinus albus HOM05D006139 ORTHO05D007681 4.9e-266 921.0 630 71.4
Aqoxy2G03950 Aquilegia oxysepala HOM05D006139 ORTHO05D007681 6.4e-266 920.6 630 72.5
Rhsim07G0086500 Rhododendron simsii HOM05D006139 ORTHO05D007681 9.3e-265 916.8 720 66.0
Solyc09g098230.3 Solanum lycopersicum HOM05D006139 ORTHO05D007681 9.3e-265 916.8 630 71.7
PSO675G6876 Papaver somniferum HOM05D006139 ORTHO05D007681 5.1e-263 911.0 627 71.9
arahy.Tifrunner.gnm1.ann1.46LBLY Arachis hypogaea HOM05D006139 ORTHO05D007681 1.1e-262 909.8 632 71.5
Cc03_g10570 Coffea canephora HOM05D006139 ORTHO05D007681 1.1e-262 909.8 628 70.9
PSO017G2886 Papaver somniferum HOM05D006139 ORTHO05D007681 2.5e-262 908.7 627 71.9
SGA_v2.0_scaffold109G31142 Striga asiatica HOM05D006139 ORTHO05D007681 3.3e-262 908.3 632 71.4
Sc22g0003230 Simmondsia chinensis HOM05D006139 ORTHO05D007681 1.3e-261 906.4 627 71.5
Migut.N00440 Erythranthe guttata HOM05D006139 ORTHO05D007681 6.2e-261 904.0 629 72.2
FAN12G0395 Fragaria x ananassa HOM05D006139 ORTHO05D007681 2.6e-259 898.7 640 73.0
ECA246G3778 Erigeron canadensis HOM05D006139 ORTHO05D007681 3.4e-259 898.3 630 71.4
FAN07G2792 Fragaria x ananassa HOM05D006139 ORTHO05D007681 4.5e-259 897.9 639 72.6
Lsat_1_v5_gn_3_24941 Lactuca sativa HOM05D006139 ORTHO05D007681 4.5e-259 897.9 629 70.9
FAN17G0552 Fragaria x ananassa HOM05D006139 ORTHO05D007681 5.8e-259 897.5 628 73.6
MSTRG.17865 Avicennia marina HOM05D006139 ORTHO05D007681 8.4e-258 893.6 629 71.2
Glyma.20G248800 Glycine max HOM05D006139 ORTHO05D007681 1.4e-257 892.9 635 70.1
Nn3g20967 Nelumbo nucifera HOM05D006139 ORTHO05D007681 1.9e-257 892.5 608 71.5
PGR031G2404 Punica granatum HOM05D006139 ORTHO05D007681 1.5e-254 882.9 631 68.5
Psat6g243280 Pisum sativum HOM05D006139 ORTHO05D007681 1.1e-252 876.7 631 68.1
Gohir.D01G041500 Gossypium hirsutum HOM05D006139 ORTHO05D007681 5.3e-252 874.4 589 73.7
Lj5g0023092 Lotus japonicus HOM05D006139 ORTHO05D007681 1.9e-249 865.9 627 68.4
Sp1g15110 Schrenkiella parvula HOM05D006139 ORTHO05D007681 5.5e-249 864.4 629 66.9
Medtr1g116980 Medicago truncatula HOM05D006139 ORTHO05D007681 1.6e-248 862.8 626 67.6
Carub.0001s1670 Capsella rubella HOM05D006139 ORTHO05D007681 1.0e-247 860.1 627 67.0
THA.LOC104812308 Tarenaya hassleriana HOM05D006139 ORTHO05D007681 1.1e-246 856.7 627 67.1
Thhalv10007085m.g Eutrema salsugineum HOM05D006139 ORTHO05D007681 1.5e-246 856.3 628 66.4
VMungo0720G1636 Vigna mungo HOM05D006139 ORTHO05D007681 5.7e-246 854.4 631 67.2
AT1G16970 Arabidopsis thaliana HOM05D006139 ORTHO05D007681 1.6e-245 852.8 629 66.8
Phvul.007G001600 Phaseolus vulgaris HOM05D006139 ORTHO05D007681 2.2e-245 852.4 630 68.6
CARHR017480 Cardamine hirsuta HOM05D006139 ORTHO05D007681 9.0e-244 847.0 629 66.9
C05p15280 Brassica napus HOM05D006139 ORTHO05D007681 2.2e-242 842.4 628 65.3
BcaC05g25552 Brassica carinata HOM05D006139 ORTHO05D007681 2.9e-242 842.0 628 65.0
Hund19684 Selenicereus undatus HOM05D006139 ORTHO05D007681 5.0e-242 841.3 629 68.4
BcaB02g06659 Brassica carinata HOM05D006139 ORTHO05D007681 1.9e-241 839.3 628 65.0
A06p12870 Brassica napus HOM05D006139 ORTHO05D007681 3.6e-240 835.1 628 64.6
Zm00001eb116810 Zea mays HOM05D006139 ORTHO05D007681 1.8e-236 822.8 631 63.2
arahy.Tifrunner.gnm1.ann1.JAL8JD Arachis hypogaea HOM05D006139 ORTHO05D007681 1.9e-233 812.8 642 65.9
AUR62018029 Chenopodium quinoa HOM05D006139 ORTHO05D007681 3.7e-229 798.5 649 63.6
BolC5t30234H Brassica oleracea HOM05D006139 ORTHO05D007681 7.0e-228 794.3 628 62.4
BraA06t24447Z Brassica rapa HOM05D006139 ORTHO05D007681 2.0e-227 792.7 628 62.4
Dinv44237 Davidia involucrata HOM05D006139 ORTHO05D007681 2.5e-225 785.8 494 78.3
CAN.G710.40 Capsicum annuum HOM05D006139 ORTHO05D007681 4.2e-225 785.0 642 64.2
ATR0609G005 Amborella trichopoda HOM05D006139 ORTHO05D007681 2.7e-224 782.3 632 62.0
COL.COLO4_17513 Corchorus olitorius HOM05D006139 ORTHO05D007681 3.0e-223 778.9 645 63.3
Lj4A728T41 Lonicera japonica HOM05D006139 ORTHO05D007681 2.8e-221 772.3 586 68.1
AUR62003718 Chenopodium quinoa HOM05D006139 ORTHO05D007681 8.2e-221 770.8 614 65.1
Haze_11079 Corylus avellana HOM05D006139 ORTHO05D007681 3.8e-218 761.9 629 64.7
vmacro13984 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 9.4e-217 757.3 740 56.5
MBI07_g00628_MAGBIO Magnolia biondii HOM05D006139 ORTHO05D007681 8.0e-216 754.2 628 61.9
Nitab4.5_0001687g0050 Nicotiana tabacum HOM05D006139 ORTHO05D007681 2.3e-199 699.5 592 61.7
Nitab4.5_0001526g0130 Nicotiana tabacum HOM05D006139 ORTHO05D007681 7.0e-196 688.0 646 57.7
Peaxi162Scf00286g00443 Petunia axillaris HOM05D006139 ORTHO05D007681 3.2e-188 662.5 631 57.7
ClCG07G016640 Citrullus lanatus HOM05D006139 ORTHO05D007681 2.0e-187 659.8 655 57.1
Mapoly0113s0020 Marchantia polymorpha HOM05D006139 ORTHO05D007681 5.2e-175 618.6 627 51.2
Oeu013397.2 Olea europaea HOM05D006139 ORTHO05D007681 4.6e-171 605.5 403 73.9
SMO361G0513 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 3.8e-165 585.9 566 52.8
SMO361G0769 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 2.1e-163 580.1 566 52.3
HPP92_015930 Vanilla planifolia HOM05D006139 ORTHO05D007681 2.6e-158 563.1 439 65.6
AagrBONN_evm.TU.Sc2ySwM_228.1556 Anthoceros agrestis HOM05D006139 ORTHO05D007681 1.6e-147 527.3 636 45.0
CDE02G2779 Ceratophyllum demersum HOM05D006139 ORTHO05D007681 1.6e-144 517.3 441 61.2
Cpa.g.sc77.50 Carica papaya HOM05D006139 ORTHO05D007681 2.2e-141 506.9 541 52.9
CBR_g19434 Chara braunii HOM05D006139 ORTHO05D007681 2.6e-134 483.4 633 41.9
Aa31LG7G1410 Aethionema arabicum HOM05D006139 ORTHO05D007681 3.4e-134 483.0 628 44.9
Pp3c18_7140 Physcomitrium patens HOM05D006139 ORTHO05D007681 1.4e-132 477.6 625 43.7
Atru.chr2.2053 Acer truncatum HOM05D006139 ORTHO05D007681 1.6e-131 474.2 309 77.7
PGSC0003DMG400014069 Solanum tuberosum HOM05D006139 ORTHO05D007681 4.5e-118 429.5 291 73.2
SHI27652 Sapria himalayana HOM05D006139 ORTHO05D007681 1.0e-117 428.3 360 61.4
Atru.chr2.2052 Acer truncatum HOM05D006139 ORTHO05D007681 8.5e-117 425.2 271 75.6
TPR.G8868 Trifolium pratense HOM05D006139 ORTHO05D007681 4.2e-116 422.9 284 71.1
TPR.G8879 Trifolium pratense HOM05D006139 ORTHO05D007681 6.1e-115 419.1 295 69.8
TPR.G8907 Trifolium pratense HOM05D006139 ORTHO05D007681 5.4e-87 326.2 225 71.6
Ca_11423_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 4.5e-86 323.2 252 64.7
SEGI_35314 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 7.7e-86 322.4 247 63.6
DCAR_005495 Daucus carota HOM05D006139 ORTHO05D007681 3.8e-85 320.1 245 66.1
DCAR_005496 Daucus carota HOM05D006139 ORTHO05D007681 6.1e-83 312.8 233 67.8
unitig_578.g15953 Utricularia gibba HOM05D006139 ORTHO05D007681 1.5e-68 265.0 248 55.6
FAN22G0061 Fragaria x ananassa HOM05D006139 ORTHO05D007681 4.3e-60 236.9 171 70.8
Os07g0184900 Oryza sativa ssp. japonica HOM05D006139 ORTHO05D007681 1.6e-59 235.0 158 69.0
Ah.03g143030 Amaranthus hybridus HOM05D006139 ORTHO05D007681 3.8e-56 223.8 186 64.0
Cre13.g607500 Chlamydomonas reinhardtii HOM05D006139 ORTHO05D007681 3.8e-56 223.8 703 28.3
unitig_578.g15954 Utricularia gibba HOM05D006139 ORTHO05D004041 1.1e-50 205.7 168 62.5
Ca_11425_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 3.8e-48 197.2 134 72.4
Hund20183 Selenicereus undatus HOM05D006139 ORTHO05D007681 6.0e-46 189.9 189 57.1
Cfa021664 Carpinus fangiana HOM05D006139 ORTHO05D007681 6.6e-45 186.4 623 27.1
arahy.Tifrunner.gnm1.ann1.6RHH59 Arachis hypogaea HOM05D006139 ORTHO05D007681 1.9e-39 168.3 129 66.7
Ca_11424_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 3.1e-34 151.0 105 71.4
CANSAT78G0600 Cannabis sativa HOM05D006139 ORTHO05D007681 5.8e-33 146.7 118 62.7
MCO14G338 Micromonas commoda HOM05D006139 ORTHO05D007681 6.4e-32 143.3 709 25.7
AUR62043732 Chenopodium quinoa HOM05D006139 ORTHO05D007681 6.7e-29 133.3 92 66.3
SEGI_31905 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 2.8e-19 101.3 73 61.6
HanXRQChr13g0406711 Helianthus annuus HOM05D006139 ORTHO05D007681 4.1e-18 97.4 53 84.9
Ah.03g143010 Amaranthus hybridus HOM05D006139 ORTHO05D007681 5.3e-18 97.1 128 42.2
CARHR154100 Cardamine hirsuta HOM05D006139 ORTHO05D007681 7.6e-17 93.2 66 69.7
Potri.006G132501 Populus trichocarpa HOM05D006139 ORTHO05D007681 7.6e-17 93.2 77 61.0
BolC4t22161H Brassica oleracea HOM05D006139 ORTHO05D007681 3.8e-16 90.9 78 59.0
Zm00001eb114470 Zea mays HOM05D006139 ORTHO05D007681 5.5e-15 87.0 68 61.8
vmacro12608 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 3.9e-13 80.9 65 64.6
SEGI_11325 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 2.5e-12 78.2 64 56.2
Eucgr.L02132 Eucalyptus grandis HOM05D006139 ORTHO05D007681 7.4e-12 76.6 48 75.0
Dinv25612 Davidia involucrata HOM05D000447 ORTHO05D007681 5.9e-09 67.0 123 40.7


User provided reference genes

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