Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1047500 Malus domestica HOM05D006044 ORTHO05D007653 4.8e-64 247.7 125 100.0
Prupe.1G400800 Prunus persica HOM05D006044 ORTHO05D007653 2.0e-62 242.3 125 97.6
Manes.01G177500 Manihot esculenta HOM05D006044 ORTHO05D007653 3.8e-61 238.0 125 96.0
CANSAT11G0073 Cannabis sativa HOM05D006044 ORTHO05D007653 6.5e-61 237.3 123 96.7
Medtr5g089300 Medicago truncatula HOM05D006044 ORTHO05D007653 8.5e-61 236.9 125 95.2
Cpa.g.sc157.53 Carica papaya HOM05D006044 ORTHO05D007653 1.4e-60 236.1 125 94.4
Gohir.A13G218400 Gossypium hirsutum HOM05D006044 ORTHO05D007653 1.9e-60 235.7 125 94.4
Gohir.D13G222100 Gossypium hirsutum HOM05D006044 ORTHO05D007653 1.9e-60 235.7 125 94.4
Gorai.013G253200 Gossypium raimondii HOM05D006044 ORTHO05D007653 1.9e-60 235.7 125 94.4
Thecc.09G247200 Theobroma cacao HOM05D006044 ORTHO05D007653 1.9e-60 235.7 125 95.2
Psat2g020640 Pisum sativum HOM05D006044 ORTHO05D007653 2.5e-60 235.3 125 94.4
TAR633G2719 Trochodendron aralioides HOM05D006044 ORTHO05D007653 2.5e-60 235.3 125 95.2
Atru.chr3.2998 Acer truncatum HOM05D006044 ORTHO05D007653 3.2e-60 235.0 125 94.4
FvH4_4g01940 Fragaria vesca HOM05D006044 ORTHO05D007653 3.2e-60 235.0 125 93.6
FAN12G1761 Fragaria x ananassa HOM05D006044 ORTHO05D007653 3.2e-60 235.0 125 93.6
FAN22G1152 Fragaria x ananassa HOM05D006044 ORTHO05D007653 3.2e-60 235.0 125 93.6
Glyma.02G278800 Glycine max HOM05D006044 ORTHO05D007653 3.2e-60 235.0 125 94.4
Phvul.008G202000 Phaseolus vulgaris HOM05D006044 ORTHO05D007653 3.2e-60 235.0 125 94.4
Prupe.1G025000 Prunus persica HOM05D006044 ORTHO05D007653 3.2e-60 235.0 125 94.4
RcHm_v2.0_Chr4g0388901 Rosa chinensis HOM05D006044 ORTHO05D007653 3.2e-60 235.0 125 93.6
VMungo0647G0704 Vigna mungo HOM05D006044 ORTHO05D007653 3.2e-60 235.0 125 94.4
Glyma.14G035900 Glycine max HOM05D006044 ORTHO05D007653 4.2e-60 234.6 125 93.6
COL.COLO4_24488 Corchorus olitorius HOM05D006044 ORTHO05D007653 5.5e-60 234.2 125 94.4
Nn7g36759 Nelumbo nucifera HOM05D006044 ORTHO05D007653 5.5e-60 234.2 125 94.4
TPR.G16400 Trifolium pratense HOM05D006044 ORTHO05D007653 7.2e-60 233.8 123 94.3
Ca_11896_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 9.4e-60 233.4 125 92.8
Potri.001G273200 Populus trichocarpa HOM05D006044 ORTHO05D007653 9.4e-60 233.4 123 95.9
TWI75G0655 Tripterygium wilfordii HOM05D006044 ORTHO05D007653 9.4e-60 233.4 125 93.6
Lalb_Chr10g0106211 Lupinus albus HOM05D006044 ORTHO05D007653 1.2e-59 233.0 125 93.6
Lalb_Chr17g0347851 Lupinus albus HOM05D006044 ORTHO05D007653 1.2e-59 233.0 125 93.6
LjContig00564g0010691 Lotus japonicus HOM05D006044 ORTHO05D007653 1.6e-59 232.6 123 94.3
Peaxi162Scf00021g02522 Petunia axillaris HOM05D006044 ORTHO05D007653 1.6e-59 232.6 125 92.0
THA.LOC104811201 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 1.6e-59 232.6 125 92.8
arahy.Tifrunner.gnm1.ann1.6RB8S0 Arachis hypogaea HOM05D006044 ORTHO05D007653 2.1e-59 232.3 125 92.8
arahy.Tifrunner.gnm1.ann1.L4QR06 Arachis hypogaea HOM05D006044 ORTHO05D007653 2.1e-59 232.3 125 92.8
CSS0014603 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 2.1e-59 232.3 125 92.8
Ca_06201_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 2.1e-59 232.3 125 92.8
THA.LOC104799136 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 2.7e-59 231.9 125 92.8
Nitab4.5_0000069g0030 Nicotiana tabacum HOM05D006044 ORTHO05D007653 6.1e-59 230.7 125 91.2
Nitab4.5_0011609g0020 Nicotiana tabacum HOM05D006044 ORTHO05D007653 6.1e-59 230.7 125 91.2
SEGI_07566 Sequoiadendron giganteum HOM05D006044 ORTHO05D007653 6.1e-59 230.7 125 92.0
Aa31LG3G15040 Aethionema arabicum HOM05D006044 ORTHO05D007653 1.4e-58 229.6 125 92.0
CDE09G0744 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 1.4e-58 229.6 124 91.1
QL01p016848 Quercus lobata HOM05D006044 ORTHO05D007653 1.4e-58 229.6 124 91.1
GSVIVG01037329001 Vitis vinifera HOM05D006044 ORTHO05D007653 1.4e-58 229.6 126 92.9
ATR0763G184 Amborella trichopoda HOM05D006044 ORTHO05D007653 3.0e-58 228.4 125 91.2
ClCG02G022780 Citrullus lanatus HOM05D006044 ORTHO05D007653 3.0e-58 228.4 126 92.1
MELO3C014555.2 Cucumis melo HOM05D006044 ORTHO05D007653 3.0e-58 228.4 126 92.1
Eucgr.B03747 Eucalyptus grandis HOM05D006044 ORTHO05D007653 3.0e-58 228.4 125 91.2
PSO339G3702 Papaver somniferum HOM05D006044 ORTHO05D007653 3.0e-58 228.4 125 91.2
PSO384G3308 Papaver somniferum HOM05D006044 ORTHO05D007653 3.0e-58 228.4 125 91.2
PGR102G0082 Punica granatum HOM05D006044 ORTHO05D007653 3.9e-58 228.0 125 91.2
Lsat_1_v5_gn_2_28381 Lactuca sativa HOM05D006044 ORTHO05D007653 5.2e-58 227.6 123 90.2
Lsat_1_v5_gn_2_111680 Lactuca sativa HOM05D006044 ORTHO05D007653 6.7e-58 227.3 123 90.2
unitig_27.g25012 Utricularia gibba HOM05D006044 ORTHO05D007653 8.8e-58 226.9 128 89.8
A03p05430 Brassica napus HOM05D006044 ORTHO05D007653 1.1e-57 226.5 125 89.6
C03p06320 Brassica napus HOM05D006044 ORTHO05D007653 1.1e-57 226.5 125 89.6
BolC3t13140H Brassica oleracea HOM05D006044 ORTHO05D007653 1.1e-57 226.5 125 89.6
BraA03t09881Z Brassica rapa HOM05D006044 ORTHO05D007653 1.1e-57 226.5 125 89.6
Rhsim13G0207900 Rhododendron simsii HOM05D006044 ORTHO05D007653 1.1e-57 226.5 125 90.4
Sc12g0010240 Simmondsia chinensis HOM05D006044 ORTHO05D007653 1.1e-57 226.5 125 90.4
Ciclev10017186m.g Citrus clementina HOM05D006044 ORTHO05D007653 1.5e-57 226.1 125 89.6
Cc03_g11600 Coffea canephora HOM05D006044 ORTHO05D007653 1.5e-57 226.1 127 90.6
SalBow8G2527 Salvia bowleyana HOM05D006044 ORTHO05D007653 1.5e-57 226.1 118 94.1
Ah.05g173120 Amaranthus hybridus HOM05D006044 ORTHO05D007653 2.0e-57 225.7 123 91.1
EL10Ac1g00766 Beta vulgaris HOM05D006044 ORTHO05D007653 2.0e-57 225.7 123 91.1
EL10Ac5g12840 Beta vulgaris HOM05D006044 ORTHO05D007653 2.0e-57 225.7 123 91.1
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 2.0e-57 225.7 125 88.8
CiPaw.14G111700 Carya illinoinensis HOM05D006044 ORTHO05D007653 2.0e-57 225.7 125 91.2
Hma1.2p1_0214F.1_g090800 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 2.0e-57 225.7 126 91.3
Sabra09G0050500 Salix brachista HOM05D006044 ORTHO05D007653 2.0e-57 225.7 123 89.4
A10p25610 Brassica napus HOM05D006044 ORTHO05D007653 2.6e-57 225.3 125 88.0
BraA10t44628Z Brassica rapa HOM05D006044 ORTHO05D007653 2.6e-57 225.3 125 88.0
HanXRQChr14g0453721 Helianthus annuus HOM05D006044 ORTHO05D007653 2.6e-57 225.3 123 89.4
Potri.009G067500 Populus trichocarpa HOM05D006044 ORTHO05D007653 2.6e-57 225.3 121 92.6
SGA_v2.0_scaffold310G48206 Striga asiatica HOM05D006044 ORTHO05D007653 2.6e-57 225.3 128 88.3
SGA_v2.0_scaffold3G01443 Striga asiatica HOM05D006044 ORTHO05D007653 2.6e-57 225.3 128 88.3
Hma1.2p1_1357F.1_g277915 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 3.3e-57 224.9 121 91.7
Sp6g31450 Schrenkiella parvula HOM05D006044 ORTHO05D007653 3.3e-57 224.9 125 88.8
Cfa009890 Carpinus fangiana HOM05D006044 ORTHO05D007653 4.4e-57 224.6 125 90.4
Haze_23252 Corylus avellana HOM05D006044 ORTHO05D007653 4.4e-57 224.6 125 90.4
Thhalv10015024m.g Eutrema salsugineum HOM05D006044 ORTHO05D007653 4.4e-57 224.6 125 88.8
HanXRQChr07g0196181 Helianthus annuus HOM05D006044 ORTHO05D007653 4.4e-57 224.6 123 89.4
Oeu032567.1 Olea europaea HOM05D006044 ORTHO05D007653 4.4e-57 224.6 128 88.3
AUR62013740 Chenopodium quinoa HOM05D006044 ORTHO05D007653 5.7e-57 224.2 123 89.4
AUR62023411 Chenopodium quinoa HOM05D006044 ORTHO05D007653 5.7e-57 224.2 123 89.4
BcaB01g05427 Brassica carinata HOM05D006044 ORTHO05D007653 7.4e-57 223.8 125 88.0
Migut.N02377 Erythranthe guttata HOM05D006044 ORTHO05D007653 9.7e-57 223.4 129 86.8
SalBow1G1993 Salvia bowleyana HOM05D006044 ORTHO05D000010 9.7e-57 223.4 117 93.2
Aqoxy2G00401 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 1.7e-56 222.6 125 91.2
MBI19_g20794_MAGBIO Magnolia biondii HOM05D006044 ORTHO05D007653 2.8e-56 221.9 125 90.4
CDE08G0916 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 3.7e-56 221.5 125 89.6
Solyc01g008360.3 Solanum lycopersicum HOM05D006044 ORTHO05D007653 3.7e-56 221.5 125 88.8
Sopen01g003880 Solanum pennellii HOM05D006044 ORTHO05D007653 3.7e-56 221.5 125 88.8
PGSC0003DMG400016393 Solanum tuberosum HOM05D006044 ORTHO05D007653 3.7e-56 221.5 125 88.8
Carub.0006s1069 Capsella rubella HOM05D006044 ORTHO05D007653 4.8e-56 221.1 125 88.0
AagrBONN_evm.TU.Sc2ySwM_117.1592 Anthoceros agrestis HOM05D006044 ORTHO05D007653 8.2e-56 220.3 125 88.0
ECA238G3020 Erigeron canadensis HOM05D006044 ORTHO05D007653 8.2e-56 220.3 122 87.7
unitig_699.g19149 Utricularia gibba HOM05D006044 ORTHO05D007653 1.4e-55 219.5 128 88.3
AL6G22970 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 1.8e-55 219.2 125 87.2
AT5G12190 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 1.8e-55 219.2 125 87.2
Mapoly0207s0011 Marchantia polymorpha HOM05D006044 ORTHO05D007653 9.1e-55 216.9 124 85.5
Nn017s41474 Nelumbo nucifera HOM05D006044 ORTHO05D007653 1.6e-54 216.1 116 93.1
HPP92_019149 Vanilla planifolia HOM05D006044 ORTHO05D007653 2.0e-54 215.7 119 88.2
Dinv09443 Davidia involucrata HOM05D006044 ORTHO05D007653 3.5e-54 214.9 116 92.2
Dinv37467 Davidia involucrata HOM05D006044 ORTHO05D007653 1.0e-53 213.4 116 91.4
Pp3c1_15740 Physcomitrium patens HOM05D006044 ORTHO05D007653 2.9e-53 211.8 119 85.7
Os03g0811700 Oryza sativa ssp. japonica HOM05D006044 ORTHO05D007653 3.8e-53 211.5 122 85.2
Ca_07394_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 1.9e-52 209.1 125 85.6
BcaNung07015 Brassica carinata HOM05D006044 ORTHO05D007653 4.2e-52 208.0 115 87.8
Zm00001eb062150 Zea mays HOM05D006044 ORTHO05D007653 1.2e-51 206.5 122 82.8
Zm00001eb212190 Zea mays HOM05D006044 ORTHO05D007653 1.6e-51 206.1 122 82.8
CARHR200930 Cardamine hirsuta HOM05D006044 ORTHO05D007653 4.7e-51 204.5 125 80.8
CBR_g501 Chara braunii HOM05D006044 ORTHO05D007653 8.0e-51 203.8 118 83.1
MD13G1049300 Malus domestica HOM05D006044 ORTHO05D007653 3.7e-48 194.9 106 91.5
Aqoxy2G00402 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 2.4e-47 192.2 125 74.4
AL3G46680 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 1.6e-46 189.5 116 77.6
CSS0031497 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 1.6e-46 189.5 139 71.9
SMO143G0133 Selaginella moellendorffii HOM05D006044 ORTHO05D007653 2.0e-46 189.1 115 80.9
Cre03.g158950 Chlamydomonas reinhardtii HOM05D006044 ORTHO05D007653 2.1e-43 179.1 119 72.3
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 3.1e-39 165.2 85 94.1
MCO15G700 Micromonas commoda HOM05D006044 ORTHO05D007653 1.6e-38 162.9 93 82.8
EL10Ac9g21533 Beta vulgaris HOM05D006044 ORTHO05D007653 8.6e-37 157.1 91 86.8
PRCOL_00006242 Prasinoderma coloniale HOM05D006044 ORTHO05D007653 1.8e-31 139.4 109 57.8
Haze_26695 Corylus avellana HOM05D006044 ORTHO05D007653 1.5e-28 129.8 113 49.6
AT2G14870 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 9.2e-23 110.5 70 71.4
SGA_v2.0_scaffold34G13906 Striga asiatica HOM05D006044 ORTHO05D007653 4.6e-22 108.2 105 57.1
SGA_v2.0_scaffold5G02950 Striga asiatica HOM05D006044 ORTHO05D007653 2.2e-16 89.4 77 61.0
SalBow1G3729 Salvia bowleyana HOM05D006044 ORTHO05D357234 7.8e-14 80.9 42 90.5
Pp3c14_2340 Physcomitrium patens HOM05D006044 ORTHO05D318821 1.1e-07 60.5 31 87.1
SGA_v2.0_scaffold198G41064 Striga asiatica HOM05D006044 ORTHO05D400222 2.4e-07 59.3 102 38.2
Dinv40333 Davidia involucrata HOM05D001413 ORTHO05D001385 1.2e-06 57.0 81 38.3
Gorai.003G183300 Gossypium raimondii HOM05D000142 ORTHO05D003173 2.7e-06 55.8 84 34.5
Dinv30820 Davidia involucrata HOM05D001413 ORTHO05D001385 3.5e-06 55.5 72 40.3
MBI14_g23541_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 3.5e-06 55.5 80 40.0
Mapoly0042s0009 Marchantia polymorpha HOM05D000142 ORTHO05D001253 3.5e-06 55.5 101 32.7
Mapoly0007s0152 Marchantia polymorpha HOM05D003264 ORTHO05D003276 4.6e-06 55.1 95 32.6
Potri.005G024600 Populus trichocarpa HOM05D001413 ORTHO05D001385 4.6e-06 55.1 64 45.3
COL.COLO4_11167 Corchorus olitorius HOM05D002411 ORTHO05D002564 7.8e-06 54.3 75 34.7
Haze_04929 Corylus avellana HOM05D001413 ORTHO05D001385 7.8e-06 54.3 78 39.7
Haze_04930 Corylus avellana HOM05D001413 ORTHO05D001385 7.8e-06 54.3 78 39.7


User provided reference genes

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