Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 2.3e-254 881.7 446 100.0
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 9.6e-224 780.0 437 92.4
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 8.8e-201 703.7 427 84.8
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 5.7e-200 701.0 427 84.3
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.7e-199 698.4 427 83.8
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 5.9e-197 691.0 429 82.8
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 6.1e-194 681.0 427 82.0
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 3.9e-193 678.3 427 82.4
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 6.7e-193 677.6 427 82.7
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.2e-186 656.8 424 81.1
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 1.6e-186 656.4 434 78.8
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 3.7e-183 645.2 433 77.1
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 1.8e-182 642.9 431 77.0
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 6.5e-180 634.4 434 76.0
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 4.2e-179 631.7 454 74.2
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 2.1e-178 629.4 451 73.6
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 2.1e-178 629.4 432 75.9
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 6.1e-178 627.9 464 71.3
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 1.8e-177 626.3 434 74.7
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.0e-176 622.9 460 71.7
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.6e-176 622.5 460 71.5
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 4.4e-176 621.7 460 71.5
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 7.5e-176 620.9 432 74.5
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.3e-175 620.2 460 71.3
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 4.8e-175 618.2 429 75.1
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 7.0e-174 614.4 424 75.9
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 7.0e-174 614.4 433 74.4
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 1.2e-173 613.6 459 70.8
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 1.6e-173 613.2 427 73.8
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 1.7e-172 609.8 428 73.8
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 2.2e-172 609.4 425 73.6
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 2.2e-172 609.4 422 76.5
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 2.9e-172 609.0 433 74.4
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 3.8e-172 608.6 453 72.4
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 3.8e-172 608.6 453 72.4
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 3.8e-172 608.6 425 72.7
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 5.0e-172 608.2 461 70.7
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 6.5e-172 607.8 460 70.2
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.5e-171 605.9 421 76.5
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 2.7e-170 602.4 426 73.0
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 1.0e-169 600.5 427 71.9
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 3.7e-167 592.0 428 71.0
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 8.3e-167 590.9 431 73.3
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 7.0e-166 587.8 430 71.6
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 7.0e-166 587.8 440 69.8
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 2.7e-165 585.9 426 71.8
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 3.5e-165 585.5 434 71.7
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 4.5e-165 585.1 433 70.9
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 3.8e-164 582.0 421 73.2
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 1.1e-163 580.5 434 69.8
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 2.1e-162 576.2 433 69.1
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 1.8e-161 573.2 427 71.0
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 2.3e-161 572.8 437 68.4
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 1.1e-158 563.9 425 69.6
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 1.8e-158 563.1 429 68.1
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 9.2e-158 560.8 425 70.8
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 1.6e-157 560.1 444 68.9
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 4.5e-157 558.5 425 69.2
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 4.5e-157 558.5 429 67.8
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 2.3e-156 556.2 425 68.0
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 2.3e-156 556.2 430 68.8
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 3.8e-156 555.4 419 68.7
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 5.0e-156 555.1 434 69.6
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 1.5e-155 553.5 428 67.5
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 1.5e-155 553.5 429 67.4
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 2.5e-155 552.7 419 69.0
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 4.3e-155 552.0 425 68.9
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 5.6e-155 551.6 427 67.7
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 6.1e-154 548.1 488 63.9
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 4.0e-153 545.4 424 67.5
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 2.0e-152 543.1 419 68.3
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 5.8e-152 541.6 430 67.9
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 9.8e-152 540.8 421 67.5
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 1.3e-151 540.4 423 66.9
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 4.9e-151 538.5 421 67.0
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 1.4e-150 537.0 421 67.2
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 1.4e-150 537.0 535 57.0
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 1.7e-148 530.0 438 65.8
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 3.0e-148 529.3 388 71.1
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 1.1e-147 527.3 424 65.3
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 6.2e-146 521.5 397 70.5
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 2.3e-145 519.6 432 65.0
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 6.8e-145 518.1 424 66.7
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 3.4e-144 515.8 428 65.4
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 2.2e-143 513.1 427 64.9
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 2.9e-143 512.7 440 64.8
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 1.6e-141 506.9 434 63.4
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 2.7e-141 506.1 412 67.5
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 4.7e-138 495.4 444 61.5
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 6.4e-135 485.0 425 61.2
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 6.0e-133 478.4 423 60.5
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 5.6e-131 471.9 422 60.2
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 3.6e-130 469.2 448 57.8
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 6.2e-130 468.4 434 60.4
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 1.2e-125 454.1 354 66.7
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 1.6e-125 453.8 345 66.4
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 1.3e-122 444.1 455 57.6
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 1.6e-122 443.7 440 56.4
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 1.9e-118 430.3 254 84.3
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 1.2e-117 427.6 249 85.1
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 2.8e-114 416.4 429 52.0
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 2.8e-114 416.4 423 54.1
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 9.0e-113 411.4 234 86.8
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 7.6e-112 408.3 404 55.2
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 8.4e-111 404.8 315 67.0
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 9.3e-110 401.4 428 54.2
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 1.3e-108 397.5 242 80.6
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 3.7e-98 362.8 417 51.3
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.1e-97 361.3 320 63.4
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 2.4e-97 360.1 211 84.4
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 2.9e-95 353.2 484 44.4
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 2.5e-94 350.1 322 63.0
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 5.1e-92 342.4 282 64.9
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 5.3e-89 332.4 349 53.9
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 1.2e-80 304.7 323 59.1
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 8.5e-71 271.9 274 57.7
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 3.6e-69 266.5 277 54.5
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 1.8e-68 264.2 240 58.8
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 3.2e-62 243.4 247 55.9
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 4.2e-62 243.0 213 59.6
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 4.8e-58 229.6 210 61.0
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 1.1e-57 228.4 439 34.6
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 9.1e-57 225.3 395 40.0
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 1.3e-50 204.9 258 44.6
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 4.9e-50 203.0 142 64.8
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 8.3e-50 202.2 209 53.1
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 5.0e-47 193.0 255 42.4
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 1.8e-44 184.5 170 58.8
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 7.8e-40 169.1 86 89.5
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 3.9e-39 166.8 106 79.2
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 6.8e-36 156.0 83 91.6
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 8.9e-36 155.6 98 80.6
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 3.5e-32 143.7 74 87.8
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 1.5e-30 138.3 98 69.4
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 1.8e-28 131.3 86 68.6
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 2.3e-28 131.0 250 31.6
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 1.8e-20 104.8 67 76.1
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 5.2e-20 103.2 187 39.6
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 3.4e-19 100.5 69 75.4
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 9.2e-17 92.4 92 54.3
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.7e-15 88.2 185 35.7
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 3.9e-15 87.0 81 60.5
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.2e-13 82.0 59 67.8
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 6.2e-13 79.7 54 66.7
Gorai.004G275700 Gossypium raimondii HOM05D005149 ORTHO05D006251 3.8e-10 70.5 59 66.1
TWI15G0704 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 1.9e-06 58.2 44 61.4
BcaB01g02418 Brassica carinata HOM05D005149 ORTHO05D006251 2.5e-06 57.8 111 36.9
arahy.Tifrunner.gnm1.ann1.638LQB Arachis hypogaea HOM05D000561 ORTHO05D000514 5.6e-06 56.6 36 75.0


User provided reference genes

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