Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 1.2e-253 879.4 446 100.0
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 2.5e-224 781.9 437 92.4
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 5.7e-208 727.6 452 83.0
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 5.7e-208 727.6 452 83.2
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 7.4e-208 727.2 450 83.3
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 1.2e-205 719.9 454 81.5
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 7.2e-203 710.7 452 80.8
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 2.1e-202 709.1 452 81.9
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.4e-201 706.4 452 81.6
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 1.9e-195 686.0 462 77.7
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.3e-193 679.1 468 77.8
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 8.2e-191 670.6 446 78.0
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 5.9e-189 664.5 456 75.7
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 1.1e-187 660.2 456 75.2
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 5.5e-187 657.9 462 73.8
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 3.9e-185 651.7 455 75.4
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 5.7e-184 647.9 458 74.0
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 5.7e-184 647.9 446 76.9
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.2e-183 646.0 459 73.6
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 2.2e-183 646.0 459 73.4
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 2.2e-183 646.0 451 74.1
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.4e-182 643.3 459 73.6
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 2.4e-182 642.5 454 74.2
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 2.4e-182 642.5 456 75.2
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 5.3e-182 641.3 450 74.0
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 9.1e-182 640.6 456 75.2
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 1.5e-179 633.3 449 75.1
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 1.5e-179 633.3 458 72.9
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.9e-179 632.9 447 74.9
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 3.2e-179 632.1 458 72.3
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 7.2e-179 630.9 458 72.3
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 3.6e-178 628.6 451 71.6
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 6.1e-178 627.9 473 72.3
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 6.1e-178 627.9 473 72.3
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 1.4e-177 626.7 450 73.8
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 6.7e-177 624.4 460 71.7
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 8.8e-177 624.0 449 71.9
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 2.6e-176 622.5 450 72.0
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 1.3e-175 620.2 456 71.1
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 1.4e-174 616.7 447 70.7
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 1.8e-174 616.3 452 70.6
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 1.2e-173 613.6 456 71.5
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 1.6e-173 613.2 451 71.0
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 7.7e-173 610.9 448 69.4
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 2.9e-172 609.0 438 74.4
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 6.5e-172 607.8 455 71.9
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 2.7e-170 602.4 450 70.0
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 3.6e-170 602.1 434 73.5
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 8.0e-170 600.9 441 72.3
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 4.0e-169 598.6 451 70.7
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 8.8e-169 597.4 453 69.3
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 3.4e-168 595.5 453 68.4
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 9.8e-168 594.0 457 68.9
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 7.0e-166 587.8 450 70.2
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 3.5e-165 585.5 452 66.8
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 1.0e-164 583.9 432 71.1
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 6.6e-164 581.3 446 68.6
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 5.5e-163 578.2 458 69.2
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 7.2e-163 577.8 506 63.6
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 1.6e-162 576.6 446 67.5
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 1.6e-162 576.6 450 66.7
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 2.8e-162 575.9 439 68.3
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 1.8e-161 573.2 440 68.4
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 5.2e-161 571.6 450 66.4
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 5.2e-161 571.6 450 66.2
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 6.8e-161 571.2 439 67.4
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 8.9e-161 570.9 446 67.3
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 1.5e-160 570.1 447 67.8
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 2.0e-160 569.7 453 67.5
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 6.3e-159 564.7 439 67.2
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 7.0e-158 561.2 440 67.7
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 2.7e-157 559.3 441 66.4
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 7.8e-157 557.8 448 69.0
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 2.3e-156 556.2 440 65.5
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 3.8e-156 555.4 441 66.2
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 8.6e-156 554.3 452 66.4
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 1.1e-155 553.9 406 71.4
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 1.1e-155 553.9 448 65.6
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 9.5e-155 550.8 456 66.2
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 1.8e-153 546.6 461 64.6
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 6.8e-153 544.7 537 57.9
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 8.3e-151 537.7 443 65.5
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 1.4e-150 537.0 452 64.6
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 2.4e-150 536.2 459 63.4
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 1.0e-148 530.8 466 63.3
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 1.2e-144 517.3 404 69.6
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 4.4e-144 515.4 435 64.1
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 2.2e-143 513.1 467 60.2
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 2.4e-142 509.6 414 67.1
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 1.2e-136 490.7 429 62.0
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 1.7e-135 486.9 463 57.9
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 3.7e-135 485.7 446 59.9
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 6.4e-135 485.0 431 60.8
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 2.7e-133 479.6 355 68.2
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 5.6e-131 471.9 458 58.3
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 3.6e-130 469.2 452 59.5
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 1.9e-126 456.8 462 55.8
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 2.7e-125 453.0 274 82.8
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 2.3e-124 449.9 268 84.3
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 9.6e-123 444.5 361 65.9
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 1.7e-119 433.7 253 85.8
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 7.3e-115 418.3 329 66.0
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 4.8e-114 415.6 437 51.5
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 1.8e-113 413.7 430 54.4
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 3.1e-113 412.9 254 80.3
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 7.1e-110 401.7 410 54.1
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 3.5e-109 399.4 432 54.4
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 8.4e-103 378.3 228 82.5
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 2.8e-98 363.2 483 45.3
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 3.7e-98 362.8 361 55.1
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 1.4e-97 360.9 421 50.8
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 5.8e-96 355.5 324 62.7
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 8.4e-95 351.7 332 60.8
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 5.1e-92 342.4 287 64.8
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 1.9e-78 297.4 330 58.2
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 1.0e-76 291.6 260 59.2
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 1.9e-70 270.8 280 57.9
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 1.5e-67 261.2 284 53.5
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 7.7e-64 248.8 216 62.5
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 2.3e-60 237.3 248 55.2
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 2.2e-58 230.7 400 41.0
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 3.7e-58 229.9 442 35.3
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 5.4e-57 226.1 210 60.0
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 5.7e-51 206.1 259 45.6
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 4.9e-50 203.0 225 50.7
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 6.3e-50 202.6 138 65.2
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 5.5e-46 189.5 172 58.7
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 5.5e-46 189.5 256 43.0
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 4.6e-40 169.9 86 90.7
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 5.6e-38 162.9 101 82.2
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 8.0e-37 159.1 91 79.1
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 7.5e-35 152.5 98 79.6
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 3.2e-33 147.1 83 89.2
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 2.0e-32 144.4 74 89.2
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 2.1e-29 134.4 87 67.8
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 3.4e-27 127.1 251 31.5
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 4.7e-21 106.7 67 77.6
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 2.0e-19 101.3 94 58.5
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 5.8e-19 99.8 69 75.4
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 2.2e-18 97.8 185 39.5
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 8.6e-15 85.9 59 67.8
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 3.3e-14 84.0 84 58.3
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 4.3e-14 83.6 59 69.5
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 7.3e-14 82.8 181 35.9
Gorai.004G275700 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.1e-09 68.9 65 61.5
BcaB01g02418 Brassica carinata HOM05D005149 ORTHO05D006251 4.2e-09 67.0 114 38.6
arahy.Tifrunner.gnm1.ann1.638LQB Arachis hypogaea HOM05D000561 ORTHO05D000514 1.5e-06 58.5 36 77.8
TWI15G0704 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 3.3e-06 57.4 44 59.1


User provided reference genes

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