Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1206900 Malus domestica HOM05D001410 ORTHO05D006840 8.8e-56 219.9 102 100.0
ATR0661G435 Amborella trichopoda HOM05D001410 ORTHO05D006840 9.5e-18 93.6 96 56.2
Atru.chr1.370 Acer truncatum HOM05D001410 ORTHO05D006840 1.2e-17 93.2 96 56.2
Atru.ctg97_1.1 Acer truncatum HOM05D001410 ORTHO05D006840 1.2e-17 93.2 96 56.2
CSS0001759 Camellia sinensis var. sinensis HOM05D001410 ORTHO05D006840 1.2e-17 93.2 96 56.2
Prupe.5G076000 Prunus persica HOM05D001410 ORTHO05D006840 1.2e-17 93.2 96 56.2
EL10Ac2g03345 Beta vulgaris HOM05D001410 ORTHO05D006840 1.6e-17 92.8 96 55.2
CANSAT21G1393 Cannabis sativa HOM05D001410 ORTHO05D006840 1.6e-17 92.8 96 55.2
Cfa016279 Carpinus fangiana HOM05D001410 ORTHO05D006840 1.6e-17 92.8 96 56.2
Haze_00033 Corylus avellana HOM05D001410 ORTHO05D006840 1.6e-17 92.8 96 56.2
MELO3C019492.2 Cucumis melo HOM05D001410 ORTHO05D006840 1.6e-17 92.8 96 55.2
CsaV3_3G018830 Cucumis sativus L. HOM05D001410 ORTHO05D006840 1.6e-17 92.8 96 55.2
MBI04_g30786_MAGBIO Magnolia biondii HOM05D001410 ORTHO05D006840 1.6e-17 92.8 96 56.2
Manes.14G023300 Manihot esculenta HOM05D001410 ORTHO05D006840 1.6e-17 92.8 96 56.2
Nitab4.5_0001611g0080 Nicotiana tabacum HOM05D001410 ORTHO05D006840 1.6e-17 92.8 98 53.1
Phvul.004G109800 Phaseolus vulgaris HOM05D001410 ORTHO05D006840 1.6e-17 92.8 96 55.2
PGR042G0190 Punica granatum HOM05D001410 ORTHO05D006840 1.6e-17 92.8 96 56.2
Rhsim09G0200200 Rhododendron simsii HOM05D001410 ORTHO05D006840 1.6e-17 92.8 96 56.2
TAR636G1793 Trochodendron aralioides HOM05D001410 ORTHO05D006840 1.6e-17 92.8 96 56.2
vmacro09819 Vaccinium macrocarpon HOM05D001410 ORTHO05D006840 1.6e-17 92.8 96 56.2
Actinidia34148 Actinidia chinensis HOM05D001410 ORTHO05D007753 2.1e-17 92.4 96 55.2
Cpa.g.sc107.96 Carica papaya HOM05D001410 ORTHO05D006840 2.1e-17 92.4 96 55.2
CiPaw.05G263200 Carya illinoinensis HOM05D001410 ORTHO05D006840 2.1e-17 92.4 96 55.2
CDE11G0932 Ceratophyllum demersum HOM05D001410 ORTHO05D006840 2.1e-17 92.4 96 54.2
AUR62037623 Chenopodium quinoa HOM05D001410 ORTHO05D006840 2.1e-17 92.4 103 55.3
ClCG05G008280 Citrullus lanatus HOM05D001410 ORTHO05D006840 2.1e-17 92.4 96 55.2
COL.COLO4_36928 Corchorus olitorius HOM05D001410 ORTHO05D006840 2.1e-17 92.4 96 55.2
Dinv28396 Davidia involucrata HOM05D001410 ORTHO05D006840 2.1e-17 92.4 96 55.2
Glyma.09G133200 Glycine max HOM05D001410 ORTHO05D006840 2.1e-17 92.4 96 55.2
Glyma.16G179800 Glycine max HOM05D001410 ORTHO05D006840 2.1e-17 92.4 96 55.2
Gohir.A12G255700 Gossypium hirsutum HOM05D001410 ORTHO05D006840 2.1e-17 92.4 96 55.2
Gohir.D12G257100 Gossypium hirsutum HOM05D001410 ORTHO05D006840 2.1e-17 92.4 96 55.2
Gorai.008G275300 Gossypium raimondii HOM05D001410 ORTHO05D006840 2.1e-17 92.4 96 55.2
Lj1C1004T3 Lonicera japonica HOM05D001410 ORTHO05D006840 2.1e-17 92.4 96 55.2
Lj2g0023395 Lotus japonicus HOM05D001410 ORTHO05D006840 2.1e-17 92.4 96 55.2
Oeu033106.1 Olea europaea HOM05D001410 ORTHO05D006840 2.1e-17 92.4 96 55.2
SalBow2G1075 Salvia bowleyana HOM05D001410 ORTHO05D006840 2.1e-17 92.4 96 55.2
SalBow2G2133 Salvia bowleyana HOM05D001410 ORTHO05D006840 2.1e-17 92.4 96 55.2
Sed0018120 Sechium edule HOM05D001410 ORTHO05D006840 2.1e-17 92.4 96 55.2
Sc09g0007270 Simmondsia chinensis HOM05D001410 ORTHO05D006840 2.1e-17 92.4 96 55.2
SGA_v2.0_scaffold10G05300 Striga asiatica HOM05D001410 ORTHO05D006840 2.1e-17 92.4 96 55.2
GSVIVG01028877001 Vitis vinifera HOM05D001410 ORTHO05D006840 2.1e-17 92.4 96 55.2
Aa31LG3G8870 Aethionema arabicum HOM05D001410 ORTHO05D006840 2.8e-17 92.0 96 54.2
AL8G26980 Arabidopsis lyrata HOM05D001410 ORTHO05D006840 2.8e-17 92.0 96 54.2
AT5G52520 Arabidopsis thaliana HOM05D001410 ORTHO05D006840 2.8e-17 92.0 96 54.2
Carub.0008s1264 Capsella rubella HOM05D001410 ORTHO05D006840 2.8e-17 92.0 96 54.2
CARHR265490 Cardamine hirsuta HOM05D001410 ORTHO05D006840 2.8e-17 92.0 96 54.2
Cc02_g02500 Coffea canephora HOM05D001410 ORTHO05D006840 2.8e-17 92.0 96 54.2
Lsat_1_v5_gn_2_131140 Lactuca sativa HOM05D001410 ORTHO05D006840 2.8e-17 92.0 96 54.2
Nitab4.5_0005056g0110 Nicotiana tabacum HOM05D001410 ORTHO05D006840 2.8e-17 92.0 96 54.2
PSO675G7606 Papaver somniferum HOM05D001410 ORTHO05D006840 2.8e-17 92.0 96 55.2
Peaxi162Scf00647g00325 Petunia axillaris HOM05D001410 ORTHO05D006840 2.8e-17 92.0 96 54.2
SEGI_03261 Sequoiadendron giganteum HOM05D001410 ORTHO05D006840 2.8e-17 92.0 96 55.2
Solyc01g096870.4 Solanum lycopersicum HOM05D001410 ORTHO05D006840 2.8e-17 92.0 96 54.2
Sopen01g040580 Solanum pennellii HOM05D001410 ORTHO05D006840 2.8e-17 92.0 96 54.2
PGSC0003DMG400027526 Solanum tuberosum HOM05D001410 ORTHO05D006840 2.8e-17 92.0 96 54.2
Ciclev10004659m.g Citrus clementina HOM05D001410 ORTHO05D006840 3.6e-17 91.7 96 55.2
Medtr3g100910 Medicago truncatula HOM05D001410 ORTHO05D006840 3.6e-17 91.7 96 54.2
PSO541G3847 Papaver somniferum HOM05D001410 ORTHO05D006840 3.6e-17 91.7 96 54.2
Hund12464 Selenicereus undatus HOM05D001410 ORTHO05D006840 3.6e-17 91.7 96 54.2
Ca_15983_v3 Cicer arietinum L. HOM05D001410 ORTHO05D006840 4.7e-17 91.3 96 54.2
Oeu045369.1 Olea europaea HOM05D001410 ORTHO05D006840 4.7e-17 91.3 96 54.2
Psat5g045320 Pisum sativum HOM05D001410 ORTHO05D006840 4.7e-17 91.3 96 54.2
Potri.017G142500 Populus trichocarpa HOM05D001410 ORTHO05D006840 4.7e-17 91.3 96 55.2
Sabra17G0119400 Salix brachista HOM05D001410 ORTHO05D006840 4.7e-17 91.3 96 55.2
Thecc.03G182500 Theobroma cacao HOM05D001410 ORTHO05D006840 4.7e-17 91.3 96 54.2
TPR.G26044 Trifolium pratense HOM05D001410 ORTHO05D006840 4.7e-17 91.3 96 54.2
VMungo0464G0041 Vigna mungo HOM05D001410 ORTHO05D006840 4.7e-17 91.3 96 54.2
BcaC04g20579 Brassica carinata HOM05D001410 ORTHO05D006840 6.1e-17 90.9 96 53.1
THA.LOC104811964 Tarenaya hassleriana HOM05D001410 ORTHO05D006840 6.1e-17 90.9 96 54.2
FvH4_5g00340 Fragaria vesca HOM05D001410 ORTHO05D006840 8.0e-17 90.5 96 55.2
FAN04G1960 Fragaria x ananassa HOM05D001410 ORTHO05D006840 8.0e-17 90.5 96 55.2
FAN13G2235 Fragaria x ananassa HOM05D001410 ORTHO05D006840 8.0e-17 90.5 96 55.2
RcHm_v2.0_Chr7g0202211 Rosa chinensis HOM05D001410 ORTHO05D006840 8.0e-17 90.5 96 55.2
Sp6g14710 Schrenkiella parvula HOM05D001410 ORTHO05D006840 8.0e-17 90.5 96 54.2
BcaB08g35606 Brassica carinata HOM05D001410 ORTHO05D006840 1.0e-16 90.1 96 53.1
BcaC03g14524 Brassica carinata HOM05D001410 ORTHO05D006840 1.0e-16 90.1 96 53.1
A02p11770 Brassica napus HOM05D001410 ORTHO05D006840 1.0e-16 90.1 96 53.1
BNapus_Darmor_BZH_scaffold_232p00120 Brassica napus HOM05D001410 ORTHO05D006840 1.0e-16 90.1 96 53.1
C02p19590 Brassica napus HOM05D001410 ORTHO05D006840 1.0e-16 90.1 96 53.1
BolC2t08096H Brassica oleracea HOM05D001410 ORTHO05D006840 1.0e-16 90.1 96 53.1
BraA02t06242Z Brassica rapa HOM05D001410 ORTHO05D006840 1.0e-16 90.1 96 53.1
Duzib068G1356 Durio zibethinus HOM05D001410 ORTHO05D006840 1.0e-16 90.1 96 54.2
Eucgr.A02753 Eucalyptus grandis HOM05D001410 ORTHO05D006840 1.0e-16 90.1 96 53.1
Duzib084G0352 Durio zibethinus HOM05D001410 ORTHO05D006840 1.4e-16 89.7 100 54.0
Thhalv10013193m.g Eutrema salsugineum HOM05D001410 ORTHO05D006840 1.4e-16 89.7 103 52.4
FAN08G3530 Fragaria x ananassa HOM05D001410 ORTHO05D006840 1.4e-16 89.7 96 54.2
ECA238G2766 Erigeron canadensis HOM05D001410 ORTHO05D006840 1.8e-16 89.4 103 51.5
HanXRQChr04g0120461 Helianthus annuus HOM05D001410 ORTHO05D006840 1.8e-16 89.4 103 51.5
HanXRQChr07g0206941 Helianthus annuus HOM05D001410 ORTHO05D006840 1.8e-16 89.4 103 51.5
Nn1g01600 Nelumbo nucifera HOM05D001410 ORTHO05D006840 1.8e-16 89.4 96 52.1
Zm00001eb300750 Zea mays HOM05D001410 ORTHO05D006840 1.8e-16 89.4 103 51.5
arahy.Tifrunner.gnm1.ann1.18GXDP Arachis hypogaea HOM05D001410 ORTHO05D006840 3.0e-16 88.6 103 51.5
arahy.Tifrunner.gnm1.ann1.BA6YY5 Arachis hypogaea HOM05D001410 ORTHO05D006840 3.0e-16 88.6 103 51.5
C09p41940 Brassica napus HOM05D001410 ORTHO05D006840 3.0e-16 88.6 96 52.1
BolC9t57078H Brassica oleracea HOM05D001410 ORTHO05D006840 3.0e-16 88.6 96 52.1
Migut.F01092 Erythranthe guttata HOM05D001410 ORTHO05D006840 3.0e-16 88.6 96 53.1
Lalb_Chr02g0141201 Lupinus albus HOM05D001410 ORTHO05D006840 3.0e-16 88.6 96 53.1
QL09p013112 Quercus lobata HOM05D001410 ORTHO05D006840 3.0e-16 88.6 96 54.2
Hma1.2p1_0327F.1_g126300 Hydrangea macrophylla HOM05D001410 ORTHO05D006840 4.0e-16 88.2 96 52.1
TWI14G0872 Tripterygium wilfordii HOM05D001410 ORTHO05D006840 4.0e-16 88.2 101 52.5
CBR_g8325 Chara braunii HOM05D001410 ORTHO05D006840 5.2e-16 87.8 96 52.1
BcaB05g21963 Brassica carinata HOM05D001410 ORTHO05D006840 8.9e-16 87.0 96 52.1
TWI39G0800 Tripterygium wilfordii HOM05D001410 ORTHO05D006840 8.9e-16 87.0 96 53.1
unitig_60.g25549 Utricularia gibba HOM05D001410 ORTHO05D006840 8.9e-16 87.0 103 50.5
AagrBONN_evm.TU.Sc2ySwM_228.2217 Anthoceros agrestis HOM05D001410 ORTHO05D006840 1.2e-15 86.7 96 51.0
DCAR_009384 Daucus carota HOM05D001410 ORTHO05D006840 1.5e-15 86.3 103 50.5
DCAR_014517 Daucus carota HOM05D001410 ORTHO05D006840 2.0e-15 85.9 103 50.5
Aqoxy7G00253 Aquilegia oxysepala HOM05D001410 ORTHO05D006840 2.6e-15 85.5 103 50.5
SMO114G0131 Selaginella moellendorffii HOM05D001410 ORTHO05D006840 4.4e-15 84.7 96 52.1
Mapoly0051s0001 Marchantia polymorpha HOM05D001410 ORTHO05D006840 5.8e-15 84.3 96 49.0
PRCOL_00004237 Prasinoderma coloniale HOM05D001410 ORTHO05D006840 2.9e-14 82.0 102 49.0
Pp3c21_580 Physcomitrium patens HOM05D001410 ORTHO05D006840 3.7e-14 81.6 96 49.0
MCO06G048 Micromonas commoda HOM05D001410 ORTHO05D006840 6.4e-14 80.9 103 46.6
BcaNung07179 Brassica carinata HOM05D001410 ORTHO05D006840 1.4e-13 79.7 94 50.0
Cre09.g406200 Chlamydomonas reinhardtii HOM05D001410 ORTHO05D006840 1.2e-12 76.6 96 44.8
Atru.chr1.387 Acer truncatum HOM05D001410 ORTHO05D006840 3.5e-12 75.1 38 86.8
Ah.16g106580 Amaranthus hybridus HOM05D001410 ORTHO05D006840 1.7e-11 72.8 38 78.9
Os07g0165000 Oryza sativa ssp. japonica HOM05D001410 ORTHO05D006840 3.0e-11 72.0 33 90.9
BraA10t43089Z Brassica rapa HOM05D001410 ORTHO05D006840 1.9e-10 69.3 96 44.8
A10p10070 Brassica napus HOM05D001410 ORTHO05D006840 3.3e-10 68.6 92 46.7
MBI04_g21149_MAGBIO Magnolia biondii HOM05D001410 ORTHO05D006840 1.2e-09 66.6 95 44.2
arahy.Tifrunner.gnm1.ann1.KLDP20 Arachis hypogaea HOM05D001410 ORTHO05D006840 8.9e-08 60.5 27 92.6
HPP92_028053 Vanilla planifolia HOM05D001410 ORTHO05D006840 1.2e-07 60.1 25 96.0
MD07G1277600 Malus domestica HOM05D001410 ORTHO05D249278 1.5e-07 59.7 80 51.2
Sabra04G0052400 Salix brachista HOM05D001410 ORTHO05D006840 7.5e-07 57.4 39 74.4


User provided reference genes

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