Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001410', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '445', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p11770' => 'bna', 'A04p12210' => 'bna', 'A07p25850' => 'bna', 'A09p01100' => 'bna', 'A09p01110' => 'bna', 'A09p54220' => 'bna', 'A10p10070' => 'bna', 'A10p10080' => 'bna', 'Aa31LG10G16100' => 'aar', 'Aa31LG3G8870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3302' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.618' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.856' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2217' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2760' => 'aag', 'Actinidia03133' => 'ach', 'Actinidia06405' => 'ach', 'Actinidia20863' => 'ach', 'Actinidia20965' => 'ach', 'Actinidia21340' => 'ach', 'Actinidia21341' => 'ach', 'Actinidia31834' => 'ach', 'Actinidia34148' => 'ach', 'Ah.02g126370' => 'amhyb', 'Ah.04g153520' => 'amhyb', 'Ah.16g106580' => 'amhyb', 'AL5G29550' => 'aly', 'AL5G44840' => 'aly', 'AL7G11820' => 'aly', 'AL8G26980' => 'aly', 'Aqoxy2G01498' => 'aox', 'Aqoxy5G01895' => 'aox', 'Aqoxy6G01697' => 'aox', 'Aqoxy6G01698' => 'aox', 'Aqoxy7G00253' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18GXDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2022SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA6YY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8GG75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KLDP20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYSL7K' => 'arhy', 'AT3G62120' => 'ath', 'AT5G10880' => 'ath', 'AT5G52520' => 'ath', 'ATR0661G435' => 'atr', 'ATR0730G099' => 'atr', 'Atru.chr1.370' => 'acertr', 'Atru.chr1.387' => 'acertr', 'Atru.chr1.3904' => 'acertr', 'Atru.chr4.407' => 'acertr', 'Atru.chr5.3423' => 'acertr', 'Atru.ctg97_1.1' => 'acertr', 'AUR62012943' => 'cqu', 'AUR62027143' => 'cqu', 'AUR62027146' => 'cqu', 'AUR62027147' => 'cqu', 'AUR62029493' => 'cqu', 'AUR62035357' => 'cqu', 'AUR62035889' => 'cqu', 'AUR62037623' => 'cqu', 'AUR62040861' => 'cqu', 'BcaB02g07355' => 'bca', 'BcaB02g07357' => 'bca', 'BcaB05g21963' => 'bca', 'BcaB05g23847' => 'bca', 'BcaB06g27310' => 'bca', 'BcaB06g27314' => 'bca', 'BcaB06g27315' => 'bca', 'BcaB06g27332' => 'bca', 'BcaB08g35606' => 'bca', 'BcaC02g10103' => 'bca', 'BcaC03g14524' => 'bca', 'BcaC04g20579' => 'bca', 'BcaC05g25569' => 'bca', 'BcaC07g40705' => 'bca', 'BcaC08g43334' => 'bca', 'BcaC08g45184' => 'bca', 'BcaC08g45185' => 'bca', 'BcaNung01443' => 'bca', 'BcaNung07179' => 'bca', 'BNapus_Darmor_BZH_scaffold_232p00120' => 'bna', 'BolC2t08096H' => 'bol', 'BolC4t24837H' => 'bol', 'BolC4t26172H' => 'bol', 'BolC4t26174H' => 'bol', 'BolC4t26175H' => 'bol', 'BolC6t37974H' => 'bol', 'BolC6t37975H' => 'bol', 'BolC7t45765H' => 'bol', 'BolC8t51286H' => 'bol', 'BolC9t55948H' => 'bol', 'BolC9t57078H' => 'bol', 'BraA02t06242Z' => 'bra', 'BraA04t16882Z' => 'bra', 'BraA07t30231Z' => 'bra', 'BraA07t30232Z' => 'bra', 'BraA09t37959Z' => 'bra', 'BraA09t40834Z' => 'bra', 'BraA10t43089Z' => 'bra', 'C02p19590' => 'bna', 'C04p45860' => 'bna', 'C04p45920' => 'bna', 'C06p06930' => 'bna', 'C06p28090' => 'bna', 'C07p00790' => 'bna', 'C07p52640' => 'bna', 'C08p37080' => 'bna', 'C09p41940' => 'bna', 'CAN.G1490.15' => 'can', 'CAN.G407.28' => 'can', 'CAN.G407.29' => 'can', 'CANSAT21G1393' => 'cansat', 'CANSAT54G2973' => 'cansat', 'CARHR172460' => 'chi', 'CARHR265490' => 'chi', 'Carub.0005s2008' => 'cru', 'Carub.0005s2887' => 'cru', 'Carub.0008s0152' => 'cru', 'Carub.0008s1264' => 'cru', 'Ca_09246_v3' => 'car', 'Ca_15468_v3' => 'car', 'Ca_15983_v3' => 'car', 'CBR_g8325' => 'cbr', 'CBR_g8856' => 'cbr', 'Cc00_g01070' => 'ccan', 'Cc00_g34340' => 'ccan', 'Cc02_g02500' => 'ccan', 'Cc02_g18490' => 'ccan', 'Cc05_g00870' => 'ccan', 'Cc05_g07020' => 'ccan', 'Cc05_g08880' => 'ccan', 'Cc07_g14460' => 'ccan', 'Cc11_g01030' => 'ccan', 'CDE06G1090' => 'cde', 'CDE08G1059' => 'cde', 'CDE11G0932' => 'cde', 'Cfa004912' => 'cfa', 'Cfa016279' => 'cfa', 'Cfa023476' => 'cfa', 'Ciclev10004659m.g' => 'ccl', 'Ciclev10019765m.g' => 'ccl', 'Ciclev10031253m.g' => 'ccl', 'CiPaw.05G263200' => 'cil', 'CiPaw.07G125500' => 'cil', 'CiPaw.08G082700' => 'cil', 'CiPaw.13G167600' => 'cil', 'ClCG01G007170' => 'cla', 'ClCG05G008280' => 'cla', 'ClCG05G008300' => 'cla', 'ClCG07G015700' => 'cla', 'COL.COLO4_23130' => 'col', 'COL.COLO4_36928' => 'col', 'Cpa.g.sc107.92' => 'cpa', 'Cpa.g.sc107.96' => 'cpa', 'Cpa.g.sc285.2' => 'cpa', 'Cre07.g351300' => 'cre', 'Cre09.g406200' => 'cre', 'Cre10.g429100' => 'cre', 'Cre12.g549850' => 'cre', 'CsaV3_3G018830' => 'csa', 'CsaV3_4G003400' => 'csa', 'CsaV3_5G018610' => 'csa', 'CSS0001759' => 'camsi', 'CSS0006615' => 'camsi', 'CSS0009156' => 'camsi', 'CSS0016541' => 'camsi', 'CSS0017075' => 'camsi', 'CSS0043276' => 'camsi', 'CSS0049825' => 'camsi', 'DCAR_002557' => 'dca', 'DCAR_009384' => 'dca', 'DCAR_014517' => 'dca', 'Dinv12081' => 'din', 'Dinv28396' => 'din', 'Dinv29495' => 'din', 'Dinv33171' => 'din', 'Dinv35240' => 'din', 'Duzib068G1356' => 'dzi', 'Duzib084G0352' => 'dzi', 'Duzib133G0171' => 'dzi', 'Duzib205G1919' => 'dzi', 'Duzib268G0962' => 'dzi', 'Duzib268G1140' => 'dzi', 'Duzib268G1550' => 'dzi', 'ECA236G4070' => 'eca', 'ECA238G2766' => 'eca', 'ECA248G2670' => 'eca', 'EL10Ac2g03345' => 'bvu', 'EL10Ac2g03885' => 'bvu', 'EL10Ac3g06719' => 'bvu', 'Eucgr.A02753' => 'egr', 'Eucgr.J00690' => 'egr', 'Eucgr.K00563' => 'egr', 'FAN02G1769' => 'fan', 'FAN04G1960' => 'fan', 'FAN05G0319' => 'fan', 'FAN05G3683' => 'fan', 'FAN05G4243' => 'fan', 'FAN05G5483' => 'fan', 'FAN07G2033' => 'fan', 'FAN08G3530' => 'fan', 'FAN09G0530' => 'fan', 'FAN09G0656' => 'fan', 'FAN09G2421' => 'fan', 'FAN12G1773' => 'fan', 'FAN13G2235' => 'fan', 'FAN14G4573' => 'fan', 'FAN14G4931' => 'fan', 'FAN17G1356' => 'fan', 'FAN24G2739' => 'fan', 'FvH4_2g20861' => 'fve', 'FvH4_2g20862' => 'fve', 'FvH4_4g21680' => 'fve', 'FvH4_5g00340' => 'fve', 'FvH4_6g31250' => 'fve', 'FvH4_6g47400' => 'fve', 'Glyma.03G224500' => 'gma', 'Glyma.09G133200' => 'gma', 'Glyma.14G153800' => 'gma', 'Glyma.16G179800' => 'gma', 'Glyma.19G221400' => 'gma', 'Gohir.A06G209000' => 'ghi', 'Gohir.A12G120000' => 'ghi', 'Gohir.A12G255700' => 'ghi', 'Gohir.D02G104232' => 'ghi', 'Gohir.D04G113650' => 'ghi', 'Gohir.D05G353500' => 'ghi', 'Gohir.D06G146050' => 'ghi', 'Gohir.D06G151800' => 'ghi', 'Gohir.D06G212000' => 'ghi', 'Gohir.D07G127900' => 'ghi', 'Gohir.D12G086500' => 'ghi', 'Gohir.D12G123600' => 'ghi', 'Gohir.D12G140050' => 'ghi', 'Gohir.D12G257100' => 'ghi', 'Gohir.D13G173600' => 'ghi', 'Gorai.001G106400' => 'gra', 'Gorai.005G118300' => 'gra', 'Gorai.006G182200' => 'gra', 'Gorai.008G134700' => 'gra', 'Gorai.008G151500' => 'gra', 'Gorai.008G275300' => 'gra', 'Gorai.009G386000' => 'gra', 'Gorai.010G177100' => 'gra', 'Gorai.010G177200' => 'gra', 'Gorai.010G254000' => 'gra', 'GSVIVG01028250001' => 'vvi', 'GSVIVG01028877001' => 'vvi', 'HanXRQChr04g0120461' => 'han', 'HanXRQChr07g0206941' => 'han', 'HanXRQChr15g0480911' => 'han', 'Haze_00033' => 'cav', 'Haze_05147' => 'cav', 'Haze_26683' => 'cav', 'Hma1.2p1_0227F.1_g096120' => 'hma', 'Hma1.2p1_0227F.1_g096130' => 'hma', 'Hma1.2p1_0327F.1_g126300' => 'hma', 'Hma1.2p1_0327F.1_g126310' => 'hma', 'Hma1.2p1_0484F.1_g162960' => 'hma', 'Hma1.2p1_0484F.1_g162965' => 'hma', 'Hma1.2p1_0636F.1_g193340' => 'hma', 'HPP92_001179' => 'vpl', 'HPP92_001947' => 'vpl', 'HPP92_015650' => 'vpl', 'HPP92_015654' => 'vpl', 'HPP92_028053' => 'vpl', 'Hund12464' => 'sun', 'Hund19272' => 'sun', 'Lalb_Chr02g0141201' => 'lal', 'Lalb_Chr02g0141421' => 'lal', 'Lalb_Chr15g0077891' => 'lal', 'Lj1C1004T3' => 'lonja', 'Lj1g0011311' => 'lja', 'Lj2g0010468' => 'lja', 'Lj2g0023395' => 'lja', 'Lj3C841G7' => 'lonja', 'Lj6A703T91' => 'lonja', 'Lj6g0016572' => 'lja', 'Lsat_1_v5_gn_2_131140' => 'lsa', 'Lsat_1_v5_gn_8_103640' => 'lsa', 'Lsat_1_v5_gn_9_93401' => 'lsa', 'Manes.01G235100' => 'mes', 'Manes.14G023300' => 'mes', 'Mapoly0025s0131' => 'mpo', 'Mapoly0051s0001' => 'mpo', 'MBI04_g21147_MAGBIO' => 'mbi', 'MBI04_g21149_MAGBIO' => 'mbi', 'MBI04_g21150_MAGBIO' => 'mbi', 'MBI04_g30786_MAGBIO' => 'mbi', 'MBI14_g06389_MAGBIO' => 'mbi', 'MBI18_g10371_MAGBIO' => 'mbi', 'MCO06G048' => 'mco', 'MCO14G216' => 'mco', 'MD01G1206900' => 'mdo', 'MD07G1277600' => 'mdo', 'MD07G1277700' => 'mdo', 'MD13G1156800' => 'mdo', 'MD16G1134100' => 'mdo', 'Medtr3g048190' => 'mtr', 'Medtr3g100910' => 'mtr', 'Medtr3g114550' => 'mtr', 'Medtr3g114570' => 'mtr', 'Medtr7g110660' => 'mtr', 'MELO3C005193.2' => 'cme', 'MELO3C017711.2' => 'cme', 'MELO3C019492.2' => 'cme', 'MELO3C029008.2' => 'cme', 'Migut.D02441' => 'egut', 'Migut.F01092' => 'egut', 'Migut.N02489' => 'egut', 'MSTRG.18762' => 'ama', 'MSTRG.21039' => 'ama', 'Nitab4.5_0000172g1620' => 'nta', 'Nitab4.5_0000232g0190' => 'nta', 'Nitab4.5_0000373g0210' => 'nta', 'Nitab4.5_0001611g0080' => 'nta', 'Nitab4.5_0002322g0120' => 'nta', 'Nitab4.5_0002322g0150' => 'nta', 'Nitab4.5_0004217g0010' => 'nta', 'Nitab4.5_0005056g0110' => 'nta', 'Nitab4.5_0006185g0010' => 'nta', 'Nitab4.5_0006185g0030' => 'nta', 'Nitab4.5_0011429g0010' => 'nta', 'Nn1g01600' => 'nnu', 'Nn1g09397' => 'nnu', 'Nn7g37405' => 'nnu', 'Oeu007521.3' => 'oeu', 'Oeu033106.1' => 'oeu', 'Oeu038081.1' => 'oeu', 'Oeu045369.1' => 'oeu', 'Os07g0165000' => 'osa', 'Os12g0443700' => 'osa', 'Peaxi162Scf00045g00024' => 'pax', 'Peaxi162Scf00207g00533' => 'pax', 'Peaxi162Scf00647g00325' => 'pax', 'PGR042G0190' => 'pgr', 'PGR142G3315' => 'pgr', 'PGSC0003DMG400014136' => 'stu', 'PGSC0003DMG400027526' => 'stu', 'PGSC0003DMG400028502' => 'stu', 'Phvul.001G218300' => 'pvu', 'Phvul.004G109800' => 'pvu', 'Potri.002G187000' => 'ptr', 'Potri.004G078866' => 'ptr', 'Potri.004G078932' => 'ptr', 'Potri.014G112400' => 'ptr', 'Potri.017G142500' => 'ptr', 'Pp3c21_580' => 'ppa', 'Pp3c2_3850' => 'ppa', 'PRCOL_00004237' => 'pco', 'PRCOL_00007039' => 'pco', 'Prupe.1G103500' => 'ppe', 'Prupe.2G299500' => 'ppe', 'Prupe.5G076000' => 'ppe', 'Prupe.8G138800' => 'ppe', 'Psat3g016680' => 'psa', 'Psat5g012360' => 'psa', 'Psat5g045320' => 'psa', 'Psat7g034480' => 'psa', 'PSO173G0115' => 'pso', 'PSO357G0154' => 'pso', 'PSO384G2916' => 'pso', 'PSO541G3847' => 'pso', 'PSO675G7606' => 'pso', 'QL09p013112' => 'qlo', 'QL10p022575' => 'qlo', 'QL11p011484' => 'qlo', 'RcHm_v2.0_Chr1g0313171' => 'rch', 'RcHm_v2.0_Chr2g0137801' => 'rch', 'RcHm_v2.0_Chr2g0166461' => 'rch', 'RcHm_v2.0_Chr4g0427891' => 'rch', 'RcHm_v2.0_Chr5g0012941' => 'rch', 'RcHm_v2.0_Chr5g0012951' => 'rch', 'RcHm_v2.0_Chr5g0080771' => 'rch', 'RcHm_v2.0_Chr6g0261561' => 'rch', 'RcHm_v2.0_Chr6g0287271' => 'rch', 'RcHm_v2.0_Chr7g0202211' => 'rch', 'Rhsim01G0000400' => 'rsi', 'Rhsim02G0055200' => 'rsi', 'Rhsim09G0200200' => 'rsi', 'Sabra04G0052400' => 'sbr', 'Sabra14G0082700' => 'sbr', 'Sabra17G0119400' => 'sbr', 'SalBow2G1075' => 'sbo', 'SalBow2G2133' => 'sbo', 'SalBow3G3029' => 'sbo', 'SalBow6G3314' => 'sbo', 'Sc09g0007270' => 'sci', 'Sc18g0006170' => 'sci', 'Sc25g0004870' => 'sci', 'Sed0015133' => 'sed', 'Sed0018120' => 'sed', 'Sed0023675' => 'sed', 'SEGI_03261' => 'sgi', 'SEGI_11320' => 'sgi', 'SGA_v2.0_scaffold10G05300' => 'sas', 'SGA_v2.0_scaffold147G36388' => 'sas', 'SGA_v2.0_scaffold22G09857' => 'sas', 'SGA_v2.0_scaffold25G10876' => 'sas', 'SGA_v2.0_scaffold262G45927' => 'sas', 'SGA_v2.0_scaffold87G27134' => 'sas', 'SMO114G0131' => 'smo', 'SMO367G0299' => 'smo', 'Solyc01g096870.4' => 'sly', 'Solyc03g117330.4' => 'sly', 'Solyc06g068320.3' => 'sly', 'Sopen01g040580' => 'spe', 'Sopen03g036220' => 'spe', 'Sopen06g025590' => 'spe', 'Sp5g01250' => 'spa', 'Sp6g14710' => 'spa', 'TAR365G0316' => 'tar', 'TAR633G0527' => 'tar', 'TAR636G1793' => 'tar', 'THA.LOC104811964' => 'tha', 'THA.LOC104817431' => 'tha', 'Thecc.01G325200' => 'tca', 'Thecc.02G038600' => 'tca', 'Thecc.02G185700' => 'tca', 'Thecc.03G182500' => 'tca', 'Thecc.04G208500' => 'tca', 'Thhalv10005900m.g' => 'esa', 'Thhalv10011470m.g' => 'esa', 'Thhalv10013193m.g' => 'esa', 'TPR.G2469' => 'tpr', 'TPR.G26044' => 'tpr', 'TWI14G0872' => 'twi', 'TWI14G1260' => 'twi', 'TWI32G0004' => 'twi', 'TWI39G0800' => 'twi', 'TWI59G1486' => 'twi', 'unitig_27.g25116' => 'ugi', 'unitig_60.g25549' => 'ugi', 'vmacro09819' => 'vma', 'vmacro18594' => 'vma', 'VMungo0464G0041' => 'vmu', 'VMungo0464G1027' => 'vmu', 'VMungo0985G0009' => 'vmu', 'VMungo1127G0793' => 'vmu', 'VMungo1383G1850' => 'vmu', 'Zm00001eb073240' => 'zma', 'Zm00001eb202580' => 'zma', 'Zm00001eb300750' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001410', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001410' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001410', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '445', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001410' ) ), 'genes' => array( 'A02p11770' => 'bna', 'A04p12210' => 'bna', 'A07p25850' => 'bna', 'A09p01100' => 'bna', 'A09p01110' => 'bna', 'A09p54220' => 'bna', 'A10p10070' => 'bna', 'A10p10080' => 'bna', 'Aa31LG10G16100' => 'aar', 'Aa31LG3G8870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3302' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.618' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.856' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2217' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2760' => 'aag', 'Actinidia03133' => 'ach', 'Actinidia06405' => 'ach', 'Actinidia20863' => 'ach', 'Actinidia20965' => 'ach', 'Actinidia21340' => 'ach', 'Actinidia21341' => 'ach', 'Actinidia31834' => 'ach', 'Actinidia34148' => 'ach', 'Ah.02g126370' => 'amhyb', 'Ah.04g153520' => 'amhyb', 'Ah.16g106580' => 'amhyb', 'AL5G29550' => 'aly', 'AL5G44840' => 'aly', 'AL7G11820' => 'aly', 'AL8G26980' => 'aly', 'Aqoxy2G01498' => 'aox', 'Aqoxy5G01895' => 'aox', 'Aqoxy6G01697' => 'aox', 'Aqoxy6G01698' => 'aox', 'Aqoxy7G00253' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18GXDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2022SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA6YY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8GG75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KLDP20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYSL7K' => 'arhy', 'AT3G62120' => 'ath', 'AT5G10880' => 'ath', 'AT5G52520' => 'ath', 'ATR0661G435' => 'atr', 'ATR0730G099' => 'atr', 'Atru.chr1.370' => 'acertr', 'Atru.chr1.387' => 'acertr', 'Atru.chr1.3904' => 'acertr', 'Atru.chr4.407' => 'acertr', 'Atru.chr5.3423' => 'acertr', 'Atru.ctg97_1.1' => 'acertr', 'AUR62012943' => 'cqu', 'AUR62027143' => 'cqu', 'AUR62027146' => 'cqu', 'AUR62027147' => 'cqu', 'AUR62029493' => 'cqu', 'AUR62035357' => 'cqu', 'AUR62035889' => 'cqu', 'AUR62037623' => 'cqu', 'AUR62040861' => 'cqu', 'BcaB02g07355' => 'bca', 'BcaB02g07357' => 'bca', 'BcaB05g21963' => 'bca', 'BcaB05g23847' => 'bca', 'BcaB06g27310' => 'bca', 'BcaB06g27314' => 'bca', 'BcaB06g27315' => 'bca', 'BcaB06g27332' => 'bca', 'BcaB08g35606' => 'bca', 'BcaC02g10103' => 'bca', 'BcaC03g14524' => 'bca', 'BcaC04g20579' => 'bca', 'BcaC05g25569' => 'bca', 'BcaC07g40705' => 'bca', 'BcaC08g43334' => 'bca', 'BcaC08g45184' => 'bca', 'BcaC08g45185' => 'bca', 'BcaNung01443' => 'bca', 'BcaNung07179' => 'bca', 'BNapus_Darmor_BZH_scaffold_232p00120' => 'bna', 'BolC2t08096H' => 'bol', 'BolC4t24837H' => 'bol', 'BolC4t26172H' => 'bol', 'BolC4t26174H' => 'bol', 'BolC4t26175H' => 'bol', 'BolC6t37974H' => 'bol', 'BolC6t37975H' => 'bol', 'BolC7t45765H' => 'bol', 'BolC8t51286H' => 'bol', 'BolC9t55948H' => 'bol', 'BolC9t57078H' => 'bol', 'BraA02t06242Z' => 'bra', 'BraA04t16882Z' => 'bra', 'BraA07t30231Z' => 'bra', 'BraA07t30232Z' => 'bra', 'BraA09t37959Z' => 'bra', 'BraA09t40834Z' => 'bra', 'BraA10t43089Z' => 'bra', 'C02p19590' => 'bna', 'C04p45860' => 'bna', 'C04p45920' => 'bna', 'C06p06930' => 'bna', 'C06p28090' => 'bna', 'C07p00790' => 'bna', 'C07p52640' => 'bna', 'C08p37080' => 'bna', 'C09p41940' => 'bna', 'CAN.G1490.15' => 'can', 'CAN.G407.28' => 'can', 'CAN.G407.29' => 'can', 'CANSAT21G1393' => 'cansat', 'CANSAT54G2973' => 'cansat', 'CARHR172460' => 'chi', 'CARHR265490' => 'chi', 'Carub.0005s2008' => 'cru', 'Carub.0005s2887' => 'cru', 'Carub.0008s0152' => 'cru', 'Carub.0008s1264' => 'cru', 'Ca_09246_v3' => 'car', 'Ca_15468_v3' => 'car', 'Ca_15983_v3' => 'car', 'CBR_g8325' => 'cbr', 'CBR_g8856' => 'cbr', 'Cc00_g01070' => 'ccan', 'Cc00_g34340' => 'ccan', 'Cc02_g02500' => 'ccan', 'Cc02_g18490' => 'ccan', 'Cc05_g00870' => 'ccan', 'Cc05_g07020' => 'ccan', 'Cc05_g08880' => 'ccan', 'Cc07_g14460' => 'ccan', 'Cc11_g01030' => 'ccan', 'CDE06G1090' => 'cde', 'CDE08G1059' => 'cde', 'CDE11G0932' => 'cde', 'Cfa004912' => 'cfa', 'Cfa016279' => 'cfa', 'Cfa023476' => 'cfa', 'Ciclev10004659m.g' => 'ccl', 'Ciclev10019765m.g' => 'ccl', 'Ciclev10031253m.g' => 'ccl', 'CiPaw.05G263200' => 'cil', 'CiPaw.07G125500' => 'cil', 'CiPaw.08G082700' => 'cil', 'CiPaw.13G167600' => 'cil', 'ClCG01G007170' => 'cla', 'ClCG05G008280' => 'cla', 'ClCG05G008300' => 'cla', 'ClCG07G015700' => 'cla', 'COL.COLO4_23130' => 'col', 'COL.COLO4_36928' => 'col', 'Cpa.g.sc107.92' => 'cpa', 'Cpa.g.sc107.96' => 'cpa', 'Cpa.g.sc285.2' => 'cpa', 'Cre07.g351300' => 'cre', 'Cre09.g406200' => 'cre', 'Cre10.g429100' => 'cre', 'Cre12.g549850' => 'cre', 'CsaV3_3G018830' => 'csa', 'CsaV3_4G003400' => 'csa', 'CsaV3_5G018610' => 'csa', 'CSS0001759' => 'camsi', 'CSS0006615' => 'camsi', 'CSS0009156' => 'camsi', 'CSS0016541' => 'camsi', 'CSS0017075' => 'camsi', 'CSS0043276' => 'camsi', 'CSS0049825' => 'camsi', 'DCAR_002557' => 'dca', 'DCAR_009384' => 'dca', 'DCAR_014517' => 'dca', 'Dinv12081' => 'din', 'Dinv28396' => 'din', 'Dinv29495' => 'din', 'Dinv33171' => 'din', 'Dinv35240' => 'din', 'Duzib068G1356' => 'dzi', 'Duzib084G0352' => 'dzi', 'Duzib133G0171' => 'dzi', 'Duzib205G1919' => 'dzi', 'Duzib268G0962' => 'dzi', 'Duzib268G1140' => 'dzi', 'Duzib268G1550' => 'dzi', 'ECA236G4070' => 'eca', 'ECA238G2766' => 'eca', 'ECA248G2670' => 'eca', 'EL10Ac2g03345' => 'bvu', 'EL10Ac2g03885' => 'bvu', 'EL10Ac3g06719' => 'bvu', 'Eucgr.A02753' => 'egr', 'Eucgr.J00690' => 'egr', 'Eucgr.K00563' => 'egr', 'FAN02G1769' => 'fan', 'FAN04G1960' => 'fan', 'FAN05G0319' => 'fan', 'FAN05G3683' => 'fan', 'FAN05G4243' => 'fan', 'FAN05G5483' => 'fan', 'FAN07G2033' => 'fan', 'FAN08G3530' => 'fan', 'FAN09G0530' => 'fan', 'FAN09G0656' => 'fan', 'FAN09G2421' => 'fan', 'FAN12G1773' => 'fan', 'FAN13G2235' => 'fan', 'FAN14G4573' => 'fan', 'FAN14G4931' => 'fan', 'FAN17G1356' => 'fan', 'FAN24G2739' => 'fan', 'FvH4_2g20861' => 'fve', 'FvH4_2g20862' => 'fve', 'FvH4_4g21680' => 'fve', 'FvH4_5g00340' => 'fve', 'FvH4_6g31250' => 'fve', 'FvH4_6g47400' => 'fve', 'Glyma.03G224500' => 'gma', 'Glyma.09G133200' => 'gma', 'Glyma.14G153800' => 'gma', 'Glyma.16G179800' => 'gma', 'Glyma.19G221400' => 'gma', 'Gohir.A06G209000' => 'ghi', 'Gohir.A12G120000' => 'ghi', 'Gohir.A12G255700' => 'ghi', 'Gohir.D02G104232' => 'ghi', 'Gohir.D04G113650' => 'ghi', 'Gohir.D05G353500' => 'ghi', 'Gohir.D06G146050' => 'ghi', 'Gohir.D06G151800' => 'ghi', 'Gohir.D06G212000' => 'ghi', 'Gohir.D07G127900' => 'ghi', 'Gohir.D12G086500' => 'ghi', 'Gohir.D12G123600' => 'ghi', 'Gohir.D12G140050' => 'ghi', 'Gohir.D12G257100' => 'ghi', 'Gohir.D13G173600' => 'ghi', 'Gorai.001G106400' => 'gra', 'Gorai.005G118300' => 'gra', 'Gorai.006G182200' => 'gra', 'Gorai.008G134700' => 'gra', 'Gorai.008G151500' => 'gra', 'Gorai.008G275300' => 'gra', 'Gorai.009G386000' => 'gra', 'Gorai.010G177100' => 'gra', 'Gorai.010G177200' => 'gra', 'Gorai.010G254000' => 'gra', 'GSVIVG01028250001' => 'vvi', 'GSVIVG01028877001' => 'vvi', 'HanXRQChr04g0120461' => 'han', 'HanXRQChr07g0206941' => 'han', 'HanXRQChr15g0480911' => 'han', 'Haze_00033' => 'cav', 'Haze_05147' => 'cav', 'Haze_26683' => 'cav', 'Hma1.2p1_0227F.1_g096120' => 'hma', 'Hma1.2p1_0227F.1_g096130' => 'hma', 'Hma1.2p1_0327F.1_g126300' => 'hma', 'Hma1.2p1_0327F.1_g126310' => 'hma', 'Hma1.2p1_0484F.1_g162960' => 'hma', 'Hma1.2p1_0484F.1_g162965' => 'hma', 'Hma1.2p1_0636F.1_g193340' => 'hma', 'HPP92_001179' => 'vpl', 'HPP92_001947' => 'vpl', 'HPP92_015650' => 'vpl', 'HPP92_015654' => 'vpl', 'HPP92_028053' => 'vpl', 'Hund12464' => 'sun', 'Hund19272' => 'sun', 'Lalb_Chr02g0141201' => 'lal', 'Lalb_Chr02g0141421' => 'lal', 'Lalb_Chr15g0077891' => 'lal', 'Lj1C1004T3' => 'lonja', 'Lj1g0011311' => 'lja', 'Lj2g0010468' => 'lja', 'Lj2g0023395' => 'lja', 'Lj3C841G7' => 'lonja', 'Lj6A703T91' => 'lonja', 'Lj6g0016572' => 'lja', 'Lsat_1_v5_gn_2_131140' => 'lsa', 'Lsat_1_v5_gn_8_103640' => 'lsa', 'Lsat_1_v5_gn_9_93401' => 'lsa', 'Manes.01G235100' => 'mes', 'Manes.14G023300' => 'mes', 'Mapoly0025s0131' => 'mpo', 'Mapoly0051s0001' => 'mpo', 'MBI04_g21147_MAGBIO' => 'mbi', 'MBI04_g21149_MAGBIO' => 'mbi', 'MBI04_g21150_MAGBIO' => 'mbi', 'MBI04_g30786_MAGBIO' => 'mbi', 'MBI14_g06389_MAGBIO' => 'mbi', 'MBI18_g10371_MAGBIO' => 'mbi', 'MCO06G048' => 'mco', 'MCO14G216' => 'mco', 'MD01G1206900' => 'mdo', 'MD07G1277600' => 'mdo', 'MD07G1277700' => 'mdo', 'MD13G1156800' => 'mdo', 'MD16G1134100' => 'mdo', 'Medtr3g048190' => 'mtr', 'Medtr3g100910' => 'mtr', 'Medtr3g114550' => 'mtr', 'Medtr3g114570' => 'mtr', 'Medtr7g110660' => 'mtr', 'MELO3C005193.2' => 'cme', 'MELO3C017711.2' => 'cme', 'MELO3C019492.2' => 'cme', 'MELO3C029008.2' => 'cme', 'Migut.D02441' => 'egut', 'Migut.F01092' => 'egut', 'Migut.N02489' => 'egut', 'MSTRG.18762' => 'ama', 'MSTRG.21039' => 'ama', 'Nitab4.5_0000172g1620' => 'nta', 'Nitab4.5_0000232g0190' => 'nta', 'Nitab4.5_0000373g0210' => 'nta', 'Nitab4.5_0001611g0080' => 'nta', 'Nitab4.5_0002322g0120' => 'nta', 'Nitab4.5_0002322g0150' => 'nta', 'Nitab4.5_0004217g0010' => 'nta', 'Nitab4.5_0005056g0110' => 'nta', 'Nitab4.5_0006185g0010' => 'nta', 'Nitab4.5_0006185g0030' => 'nta', 'Nitab4.5_0011429g0010' => 'nta', 'Nn1g01600' => 'nnu', 'Nn1g09397' => 'nnu', 'Nn7g37405' => 'nnu', 'Oeu007521.3' => 'oeu', 'Oeu033106.1' => 'oeu', 'Oeu038081.1' => 'oeu', 'Oeu045369.1' => 'oeu', 'Os07g0165000' => 'osa', 'Os12g0443700' => 'osa', 'Peaxi162Scf00045g00024' => 'pax', 'Peaxi162Scf00207g00533' => 'pax', 'Peaxi162Scf00647g00325' => 'pax', 'PGR042G0190' => 'pgr', 'PGR142G3315' => 'pgr', 'PGSC0003DMG400014136' => 'stu', 'PGSC0003DMG400027526' => 'stu', 'PGSC0003DMG400028502' => 'stu', 'Phvul.001G218300' => 'pvu', 'Phvul.004G109800' => 'pvu', 'Potri.002G187000' => 'ptr', 'Potri.004G078866' => 'ptr', 'Potri.004G078932' => 'ptr', 'Potri.014G112400' => 'ptr', 'Potri.017G142500' => 'ptr', 'Pp3c21_580' => 'ppa', 'Pp3c2_3850' => 'ppa', 'PRCOL_00004237' => 'pco', 'PRCOL_00007039' => 'pco', 'Prupe.1G103500' => 'ppe', 'Prupe.2G299500' => 'ppe', 'Prupe.5G076000' => 'ppe', 'Prupe.8G138800' => 'ppe', 'Psat3g016680' => 'psa', 'Psat5g012360' => 'psa', 'Psat5g045320' => 'psa', 'Psat7g034480' => 'psa', 'PSO173G0115' => 'pso', 'PSO357G0154' => 'pso', 'PSO384G2916' => 'pso', 'PSO541G3847' => 'pso', 'PSO675G7606' => 'pso', 'QL09p013112' => 'qlo', 'QL10p022575' => 'qlo', 'QL11p011484' => 'qlo', 'RcHm_v2.0_Chr1g0313171' => 'rch', 'RcHm_v2.0_Chr2g0137801' => 'rch', 'RcHm_v2.0_Chr2g0166461' => 'rch', 'RcHm_v2.0_Chr4g0427891' => 'rch', 'RcHm_v2.0_Chr5g0012941' => 'rch', 'RcHm_v2.0_Chr5g0012951' => 'rch', 'RcHm_v2.0_Chr5g0080771' => 'rch', 'RcHm_v2.0_Chr6g0261561' => 'rch', 'RcHm_v2.0_Chr6g0287271' => 'rch', 'RcHm_v2.0_Chr7g0202211' => 'rch', 'Rhsim01G0000400' => 'rsi', 'Rhsim02G0055200' => 'rsi', 'Rhsim09G0200200' => 'rsi', 'Sabra04G0052400' => 'sbr', 'Sabra14G0082700' => 'sbr', 'Sabra17G0119400' => 'sbr', 'SalBow2G1075' => 'sbo', 'SalBow2G2133' => 'sbo', 'SalBow3G3029' => 'sbo', 'SalBow6G3314' => 'sbo', 'Sc09g0007270' => 'sci', 'Sc18g0006170' => 'sci', 'Sc25g0004870' => 'sci', 'Sed0015133' => 'sed', 'Sed0018120' => 'sed', 'Sed0023675' => 'sed', 'SEGI_03261' => 'sgi', 'SEGI_11320' => 'sgi', 'SGA_v2.0_scaffold10G05300' => 'sas', 'SGA_v2.0_scaffold147G36388' => 'sas', 'SGA_v2.0_scaffold22G09857' => 'sas', 'SGA_v2.0_scaffold25G10876' => 'sas', 'SGA_v2.0_scaffold262G45927' => 'sas', 'SGA_v2.0_scaffold87G27134' => 'sas', 'SMO114G0131' => 'smo', 'SMO367G0299' => 'smo', 'Solyc01g096870.4' => 'sly', 'Solyc03g117330.4' => 'sly', 'Solyc06g068320.3' => 'sly', 'Sopen01g040580' => 'spe', 'Sopen03g036220' => 'spe', 'Sopen06g025590' => 'spe', 'Sp5g01250' => 'spa', 'Sp6g14710' => 'spa', 'TAR365G0316' => 'tar', 'TAR633G0527' => 'tar', 'TAR636G1793' => 'tar', 'THA.LOC104811964' => 'tha', 'THA.LOC104817431' => 'tha', 'Thecc.01G325200' => 'tca', 'Thecc.02G038600' => 'tca', 'Thecc.02G185700' => 'tca', 'Thecc.03G182500' => 'tca', 'Thecc.04G208500' => 'tca', 'Thhalv10005900m.g' => 'esa', 'Thhalv10011470m.g' => 'esa', 'Thhalv10013193m.g' => 'esa', 'TPR.G2469' => 'tpr', 'TPR.G26044' => 'tpr', 'TWI14G0872' => 'twi', 'TWI14G1260' => 'twi', 'TWI32G0004' => 'twi', 'TWI39G0800' => 'twi', 'TWI59G1486' => 'twi', 'unitig_27.g25116' => 'ugi', 'unitig_60.g25549' => 'ugi', 'vmacro09819' => 'vma', 'vmacro18594' => 'vma', 'VMungo0464G0041' => 'vmu', 'VMungo0464G1027' => 'vmu', 'VMungo0985G0009' => 'vmu', 'VMungo1127G0793' => 'vmu', 'VMungo1383G1850' => 'vmu', 'Zm00001eb073240' => 'zma', 'Zm00001eb202580' => 'zma', 'Zm00001eb300750' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001410' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001410' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001410' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001410' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001410', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '445', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p11770' => 'bna', 'A04p12210' => 'bna', 'A07p25850' => 'bna', 'A09p01100' => 'bna', 'A09p01110' => 'bna', 'A09p54220' => 'bna', 'A10p10070' => 'bna', 'A10p10080' => 'bna', 'Aa31LG10G16100' => 'aar', 'Aa31LG3G8870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3302' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.618' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.856' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2217' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2760' => 'aag', 'Actinidia03133' => 'ach', 'Actinidia06405' => 'ach', 'Actinidia20863' => 'ach', 'Actinidia20965' => 'ach', 'Actinidia21340' => 'ach', 'Actinidia21341' => 'ach', 'Actinidia31834' => 'ach', 'Actinidia34148' => 'ach', 'Ah.02g126370' => 'amhyb', 'Ah.04g153520' => 'amhyb', 'Ah.16g106580' => 'amhyb', 'AL5G29550' => 'aly', 'AL5G44840' => 'aly', 'AL7G11820' => 'aly', 'AL8G26980' => 'aly', 'Aqoxy2G01498' => 'aox', 'Aqoxy5G01895' => 'aox', 'Aqoxy6G01697' => 'aox', 'Aqoxy6G01698' => 'aox', 'Aqoxy7G00253' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18GXDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2022SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA6YY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8GG75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KLDP20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYSL7K' => 'arhy', 'AT3G62120' => 'ath', 'AT5G10880' => 'ath', 'AT5G52520' => 'ath', 'ATR0661G435' => 'atr', 'ATR0730G099' => 'atr', 'Atru.chr1.370' => 'acertr', 'Atru.chr1.387' => 'acertr', 'Atru.chr1.3904' => 'acertr', 'Atru.chr4.407' => 'acertr', 'Atru.chr5.3423' => 'acertr', 'Atru.ctg97_1.1' => 'acertr', 'AUR62012943' => 'cqu', 'AUR62027143' => 'cqu', 'AUR62027146' => 'cqu', 'AUR62027147' => 'cqu', 'AUR62029493' => 'cqu', 'AUR62035357' => 'cqu', 'AUR62035889' => 'cqu', 'AUR62037623' => 'cqu', 'AUR62040861' => 'cqu', 'BcaB02g07355' => 'bca', 'BcaB02g07357' => 'bca', 'BcaB05g21963' => 'bca', 'BcaB05g23847' => 'bca', 'BcaB06g27310' => 'bca', 'BcaB06g27314' => 'bca', 'BcaB06g27315' => 'bca', 'BcaB06g27332' => 'bca', 'BcaB08g35606' => 'bca', 'BcaC02g10103' => 'bca', 'BcaC03g14524' => 'bca', 'BcaC04g20579' => 'bca', 'BcaC05g25569' => 'bca', 'BcaC07g40705' => 'bca', 'BcaC08g43334' => 'bca', 'BcaC08g45184' => 'bca', 'BcaC08g45185' => 'bca', 'BcaNung01443' => 'bca', 'BcaNung07179' => 'bca', 'BNapus_Darmor_BZH_scaffold_232p00120' => 'bna', 'BolC2t08096H' => 'bol', 'BolC4t24837H' => 'bol', 'BolC4t26172H' => 'bol', 'BolC4t26174H' => 'bol', 'BolC4t26175H' => 'bol', 'BolC6t37974H' => 'bol', 'BolC6t37975H' => 'bol', 'BolC7t45765H' => 'bol', 'BolC8t51286H' => 'bol', 'BolC9t55948H' => 'bol', 'BolC9t57078H' => 'bol', 'BraA02t06242Z' => 'bra', 'BraA04t16882Z' => 'bra', 'BraA07t30231Z' => 'bra', 'BraA07t30232Z' => 'bra', 'BraA09t37959Z' => 'bra', 'BraA09t40834Z' => 'bra', 'BraA10t43089Z' => 'bra', 'C02p19590' => 'bna', 'C04p45860' => 'bna', 'C04p45920' => 'bna', 'C06p06930' => 'bna', 'C06p28090' => 'bna', 'C07p00790' => 'bna', 'C07p52640' => 'bna', 'C08p37080' => 'bna', 'C09p41940' => 'bna', 'CAN.G1490.15' => 'can', 'CAN.G407.28' => 'can', 'CAN.G407.29' => 'can', 'CANSAT21G1393' => 'cansat', 'CANSAT54G2973' => 'cansat', 'CARHR172460' => 'chi', 'CARHR265490' => 'chi', 'Carub.0005s2008' => 'cru', 'Carub.0005s2887' => 'cru', 'Carub.0008s0152' => 'cru', 'Carub.0008s1264' => 'cru', 'Ca_09246_v3' => 'car', 'Ca_15468_v3' => 'car', 'Ca_15983_v3' => 'car', 'CBR_g8325' => 'cbr', 'CBR_g8856' => 'cbr', 'Cc00_g01070' => 'ccan', 'Cc00_g34340' => 'ccan', 'Cc02_g02500' => 'ccan', 'Cc02_g18490' => 'ccan', 'Cc05_g00870' => 'ccan', 'Cc05_g07020' => 'ccan', 'Cc05_g08880' => 'ccan', 'Cc07_g14460' => 'ccan', 'Cc11_g01030' => 'ccan', 'CDE06G1090' => 'cde', 'CDE08G1059' => 'cde', 'CDE11G0932' => 'cde', 'Cfa004912' => 'cfa', 'Cfa016279' => 'cfa', 'Cfa023476' => 'cfa', 'Ciclev10004659m.g' => 'ccl', 'Ciclev10019765m.g' => 'ccl', 'Ciclev10031253m.g' => 'ccl', 'CiPaw.05G263200' => 'cil', 'CiPaw.07G125500' => 'cil', 'CiPaw.08G082700' => 'cil', 'CiPaw.13G167600' => 'cil', 'ClCG01G007170' => 'cla', 'ClCG05G008280' => 'cla', 'ClCG05G008300' => 'cla', 'ClCG07G015700' => 'cla', 'COL.COLO4_23130' => 'col', 'COL.COLO4_36928' => 'col', 'Cpa.g.sc107.92' => 'cpa', 'Cpa.g.sc107.96' => 'cpa', 'Cpa.g.sc285.2' => 'cpa', 'Cre07.g351300' => 'cre', 'Cre09.g406200' => 'cre', 'Cre10.g429100' => 'cre', 'Cre12.g549850' => 'cre', 'CsaV3_3G018830' => 'csa', 'CsaV3_4G003400' => 'csa', 'CsaV3_5G018610' => 'csa', 'CSS0001759' => 'camsi', 'CSS0006615' => 'camsi', 'CSS0009156' => 'camsi', 'CSS0016541' => 'camsi', 'CSS0017075' => 'camsi', 'CSS0043276' => 'camsi', 'CSS0049825' => 'camsi', 'DCAR_002557' => 'dca', 'DCAR_009384' => 'dca', 'DCAR_014517' => 'dca', 'Dinv12081' => 'din', 'Dinv28396' => 'din', 'Dinv29495' => 'din', 'Dinv33171' => 'din', 'Dinv35240' => 'din', 'Duzib068G1356' => 'dzi', 'Duzib084G0352' => 'dzi', 'Duzib133G0171' => 'dzi', 'Duzib205G1919' => 'dzi', 'Duzib268G0962' => 'dzi', 'Duzib268G1140' => 'dzi', 'Duzib268G1550' => 'dzi', 'ECA236G4070' => 'eca', 'ECA238G2766' => 'eca', 'ECA248G2670' => 'eca', 'EL10Ac2g03345' => 'bvu', 'EL10Ac2g03885' => 'bvu', 'EL10Ac3g06719' => 'bvu', 'Eucgr.A02753' => 'egr', 'Eucgr.J00690' => 'egr', 'Eucgr.K00563' => 'egr', 'FAN02G1769' => 'fan', 'FAN04G1960' => 'fan', 'FAN05G0319' => 'fan', 'FAN05G3683' => 'fan', 'FAN05G4243' => 'fan', 'FAN05G5483' => 'fan', 'FAN07G2033' => 'fan', 'FAN08G3530' => 'fan', 'FAN09G0530' => 'fan', 'FAN09G0656' => 'fan', 'FAN09G2421' => 'fan', 'FAN12G1773' => 'fan', 'FAN13G2235' => 'fan', 'FAN14G4573' => 'fan', 'FAN14G4931' => 'fan', 'FAN17G1356' => 'fan', 'FAN24G2739' => 'fan', 'FvH4_2g20861' => 'fve', 'FvH4_2g20862' => 'fve', 'FvH4_4g21680' => 'fve', 'FvH4_5g00340' => 'fve', 'FvH4_6g31250' => 'fve', 'FvH4_6g47400' => 'fve', 'Glyma.03G224500' => 'gma', 'Glyma.09G133200' => 'gma', 'Glyma.14G153800' => 'gma', 'Glyma.16G179800' => 'gma', 'Glyma.19G221400' => 'gma', 'Gohir.A06G209000' => 'ghi', 'Gohir.A12G120000' => 'ghi', 'Gohir.A12G255700' => 'ghi', 'Gohir.D02G104232' => 'ghi', 'Gohir.D04G113650' => 'ghi', 'Gohir.D05G353500' => 'ghi', 'Gohir.D06G146050' => 'ghi', 'Gohir.D06G151800' => 'ghi', 'Gohir.D06G212000' => 'ghi', 'Gohir.D07G127900' => 'ghi', 'Gohir.D12G086500' => 'ghi', 'Gohir.D12G123600' => 'ghi', 'Gohir.D12G140050' => 'ghi', 'Gohir.D12G257100' => 'ghi', 'Gohir.D13G173600' => 'ghi', 'Gorai.001G106400' => 'gra', 'Gorai.005G118300' => 'gra', 'Gorai.006G182200' => 'gra', 'Gorai.008G134700' => 'gra', 'Gorai.008G151500' => 'gra', 'Gorai.008G275300' => 'gra', 'Gorai.009G386000' => 'gra', 'Gorai.010G177100' => 'gra', 'Gorai.010G177200' => 'gra', 'Gorai.010G254000' => 'gra', 'GSVIVG01028250001' => 'vvi', 'GSVIVG01028877001' => 'vvi', 'HanXRQChr04g0120461' => 'han', 'HanXRQChr07g0206941' => 'han', 'HanXRQChr15g0480911' => 'han', 'Haze_00033' => 'cav', 'Haze_05147' => 'cav', 'Haze_26683' => 'cav', 'Hma1.2p1_0227F.1_g096120' => 'hma', 'Hma1.2p1_0227F.1_g096130' => 'hma', 'Hma1.2p1_0327F.1_g126300' => 'hma', 'Hma1.2p1_0327F.1_g126310' => 'hma', 'Hma1.2p1_0484F.1_g162960' => 'hma', 'Hma1.2p1_0484F.1_g162965' => 'hma', 'Hma1.2p1_0636F.1_g193340' => 'hma', 'HPP92_001179' => 'vpl', 'HPP92_001947' => 'vpl', 'HPP92_015650' => 'vpl', 'HPP92_015654' => 'vpl', 'HPP92_028053' => 'vpl', 'Hund12464' => 'sun', 'Hund19272' => 'sun', 'Lalb_Chr02g0141201' => 'lal', 'Lalb_Chr02g0141421' => 'lal', 'Lalb_Chr15g0077891' => 'lal', 'Lj1C1004T3' => 'lonja', 'Lj1g0011311' => 'lja', 'Lj2g0010468' => 'lja', 'Lj2g0023395' => 'lja', 'Lj3C841G7' => 'lonja', 'Lj6A703T91' => 'lonja', 'Lj6g0016572' => 'lja', 'Lsat_1_v5_gn_2_131140' => 'lsa', 'Lsat_1_v5_gn_8_103640' => 'lsa', 'Lsat_1_v5_gn_9_93401' => 'lsa', 'Manes.01G235100' => 'mes', 'Manes.14G023300' => 'mes', 'Mapoly0025s0131' => 'mpo', 'Mapoly0051s0001' => 'mpo', 'MBI04_g21147_MAGBIO' => 'mbi', 'MBI04_g21149_MAGBIO' => 'mbi', 'MBI04_g21150_MAGBIO' => 'mbi', 'MBI04_g30786_MAGBIO' => 'mbi', 'MBI14_g06389_MAGBIO' => 'mbi', 'MBI18_g10371_MAGBIO' => 'mbi', 'MCO06G048' => 'mco', 'MCO14G216' => 'mco', 'MD01G1206900' => 'mdo', 'MD07G1277600' => 'mdo', 'MD07G1277700' => 'mdo', 'MD13G1156800' => 'mdo', 'MD16G1134100' => 'mdo', 'Medtr3g048190' => 'mtr', 'Medtr3g100910' => 'mtr', 'Medtr3g114550' => 'mtr', 'Medtr3g114570' => 'mtr', 'Medtr7g110660' => 'mtr', 'MELO3C005193.2' => 'cme', 'MELO3C017711.2' => 'cme', 'MELO3C019492.2' => 'cme', 'MELO3C029008.2' => 'cme', 'Migut.D02441' => 'egut', 'Migut.F01092' => 'egut', 'Migut.N02489' => 'egut', 'MSTRG.18762' => 'ama', 'MSTRG.21039' => 'ama', 'Nitab4.5_0000172g1620' => 'nta', 'Nitab4.5_0000232g0190' => 'nta', 'Nitab4.5_0000373g0210' => 'nta', 'Nitab4.5_0001611g0080' => 'nta', 'Nitab4.5_0002322g0120' => 'nta', 'Nitab4.5_0002322g0150' => 'nta', 'Nitab4.5_0004217g0010' => 'nta', 'Nitab4.5_0005056g0110' => 'nta', 'Nitab4.5_0006185g0010' => 'nta', 'Nitab4.5_0006185g0030' => 'nta', 'Nitab4.5_0011429g0010' => 'nta', 'Nn1g01600' => 'nnu', 'Nn1g09397' => 'nnu', 'Nn7g37405' => 'nnu', 'Oeu007521.3' => 'oeu', 'Oeu033106.1' => 'oeu', 'Oeu038081.1' => 'oeu', 'Oeu045369.1' => 'oeu', 'Os07g0165000' => 'osa', 'Os12g0443700' => 'osa', 'Peaxi162Scf00045g00024' => 'pax', 'Peaxi162Scf00207g00533' => 'pax', 'Peaxi162Scf00647g00325' => 'pax', 'PGR042G0190' => 'pgr', 'PGR142G3315' => 'pgr', 'PGSC0003DMG400014136' => 'stu', 'PGSC0003DMG400027526' => 'stu', 'PGSC0003DMG400028502' => 'stu', 'Phvul.001G218300' => 'pvu', 'Phvul.004G109800' => 'pvu', 'Potri.002G187000' => 'ptr', 'Potri.004G078866' => 'ptr', 'Potri.004G078932' => 'ptr', 'Potri.014G112400' => 'ptr', 'Potri.017G142500' => 'ptr', 'Pp3c21_580' => 'ppa', 'Pp3c2_3850' => 'ppa', 'PRCOL_00004237' => 'pco', 'PRCOL_00007039' => 'pco', 'Prupe.1G103500' => 'ppe', 'Prupe.2G299500' => 'ppe', 'Prupe.5G076000' => 'ppe', 'Prupe.8G138800' => 'ppe', 'Psat3g016680' => 'psa', 'Psat5g012360' => 'psa', 'Psat5g045320' => 'psa', 'Psat7g034480' => 'psa', 'PSO173G0115' => 'pso', 'PSO357G0154' => 'pso', 'PSO384G2916' => 'pso', 'PSO541G3847' => 'pso', 'PSO675G7606' => 'pso', 'QL09p013112' => 'qlo', 'QL10p022575' => 'qlo', 'QL11p011484' => 'qlo', 'RcHm_v2.0_Chr1g0313171' => 'rch', 'RcHm_v2.0_Chr2g0137801' => 'rch', 'RcHm_v2.0_Chr2g0166461' => 'rch', 'RcHm_v2.0_Chr4g0427891' => 'rch', 'RcHm_v2.0_Chr5g0012941' => 'rch', 'RcHm_v2.0_Chr5g0012951' => 'rch', 'RcHm_v2.0_Chr5g0080771' => 'rch', 'RcHm_v2.0_Chr6g0261561' => 'rch', 'RcHm_v2.0_Chr6g0287271' => 'rch', 'RcHm_v2.0_Chr7g0202211' => 'rch', 'Rhsim01G0000400' => 'rsi', 'Rhsim02G0055200' => 'rsi', 'Rhsim09G0200200' => 'rsi', 'Sabra04G0052400' => 'sbr', 'Sabra14G0082700' => 'sbr', 'Sabra17G0119400' => 'sbr', 'SalBow2G1075' => 'sbo', 'SalBow2G2133' => 'sbo', 'SalBow3G3029' => 'sbo', 'SalBow6G3314' => 'sbo', 'Sc09g0007270' => 'sci', 'Sc18g0006170' => 'sci', 'Sc25g0004870' => 'sci', 'Sed0015133' => 'sed', 'Sed0018120' => 'sed', 'Sed0023675' => 'sed', 'SEGI_03261' => 'sgi', 'SEGI_11320' => 'sgi', 'SGA_v2.0_scaffold10G05300' => 'sas', 'SGA_v2.0_scaffold147G36388' => 'sas', 'SGA_v2.0_scaffold22G09857' => 'sas', 'SGA_v2.0_scaffold25G10876' => 'sas', 'SGA_v2.0_scaffold262G45927' => 'sas', 'SGA_v2.0_scaffold87G27134' => 'sas', 'SMO114G0131' => 'smo', 'SMO367G0299' => 'smo', 'Solyc01g096870.4' => 'sly', 'Solyc03g117330.4' => 'sly', 'Solyc06g068320.3' => 'sly', 'Sopen01g040580' => 'spe', 'Sopen03g036220' => 'spe', 'Sopen06g025590' => 'spe', 'Sp5g01250' => 'spa', 'Sp6g14710' => 'spa', 'TAR365G0316' => 'tar', 'TAR633G0527' => 'tar', 'TAR636G1793' => 'tar', 'THA.LOC104811964' => 'tha', 'THA.LOC104817431' => 'tha', 'Thecc.01G325200' => 'tca', 'Thecc.02G038600' => 'tca', 'Thecc.02G185700' => 'tca', 'Thecc.03G182500' => 'tca', 'Thecc.04G208500' => 'tca', 'Thhalv10005900m.g' => 'esa', 'Thhalv10011470m.g' => 'esa', 'Thhalv10013193m.g' => 'esa', 'TPR.G2469' => 'tpr', 'TPR.G26044' => 'tpr', 'TWI14G0872' => 'twi', 'TWI14G1260' => 'twi', 'TWI32G0004' => 'twi', 'TWI39G0800' => 'twi', 'TWI59G1486' => 'twi', 'unitig_27.g25116' => 'ugi', 'unitig_60.g25549' => 'ugi', 'vmacro09819' => 'vma', 'vmacro18594' => 'vma', 'VMungo0464G0041' => 'vmu', 'VMungo0464G1027' => 'vmu', 'VMungo0985G0009' => 'vmu', 'VMungo1127G0793' => 'vmu', 'VMungo1383G1850' => 'vmu', 'Zm00001eb073240' => 'zma', 'Zm00001eb202580' => 'zma', 'Zm00001eb300750' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001410', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001410' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001410', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '445', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001410' ) ), 'genes' => array( 'A02p11770' => 'bna', 'A04p12210' => 'bna', 'A07p25850' => 'bna', 'A09p01100' => 'bna', 'A09p01110' => 'bna', 'A09p54220' => 'bna', 'A10p10070' => 'bna', 'A10p10080' => 'bna', 'Aa31LG10G16100' => 'aar', 'Aa31LG3G8870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3302' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.618' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.856' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2217' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2760' => 'aag', 'Actinidia03133' => 'ach', 'Actinidia06405' => 'ach', 'Actinidia20863' => 'ach', 'Actinidia20965' => 'ach', 'Actinidia21340' => 'ach', 'Actinidia21341' => 'ach', 'Actinidia31834' => 'ach', 'Actinidia34148' => 'ach', 'Ah.02g126370' => 'amhyb', 'Ah.04g153520' => 'amhyb', 'Ah.16g106580' => 'amhyb', 'AL5G29550' => 'aly', 'AL5G44840' => 'aly', 'AL7G11820' => 'aly', 'AL8G26980' => 'aly', 'Aqoxy2G01498' => 'aox', 'Aqoxy5G01895' => 'aox', 'Aqoxy6G01697' => 'aox', 'Aqoxy6G01698' => 'aox', 'Aqoxy7G00253' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18GXDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2022SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA6YY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8GG75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KLDP20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYSL7K' => 'arhy', 'AT3G62120' => 'ath', 'AT5G10880' => 'ath', 'AT5G52520' => 'ath', 'ATR0661G435' => 'atr', 'ATR0730G099' => 'atr', 'Atru.chr1.370' => 'acertr', 'Atru.chr1.387' => 'acertr', 'Atru.chr1.3904' => 'acertr', 'Atru.chr4.407' => 'acertr', 'Atru.chr5.3423' => 'acertr', 'Atru.ctg97_1.1' => 'acertr', 'AUR62012943' => 'cqu', 'AUR62027143' => 'cqu', 'AUR62027146' => 'cqu', 'AUR62027147' => 'cqu', 'AUR62029493' => 'cqu', 'AUR62035357' => 'cqu', 'AUR62035889' => 'cqu', 'AUR62037623' => 'cqu', 'AUR62040861' => 'cqu', 'BcaB02g07355' => 'bca', 'BcaB02g07357' => 'bca', 'BcaB05g21963' => 'bca', 'BcaB05g23847' => 'bca', 'BcaB06g27310' => 'bca', 'BcaB06g27314' => 'bca', 'BcaB06g27315' => 'bca', 'BcaB06g27332' => 'bca', 'BcaB08g35606' => 'bca', 'BcaC02g10103' => 'bca', 'BcaC03g14524' => 'bca', 'BcaC04g20579' => 'bca', 'BcaC05g25569' => 'bca', 'BcaC07g40705' => 'bca', 'BcaC08g43334' => 'bca', 'BcaC08g45184' => 'bca', 'BcaC08g45185' => 'bca', 'BcaNung01443' => 'bca', 'BcaNung07179' => 'bca', 'BNapus_Darmor_BZH_scaffold_232p00120' => 'bna', 'BolC2t08096H' => 'bol', 'BolC4t24837H' => 'bol', 'BolC4t26172H' => 'bol', 'BolC4t26174H' => 'bol', 'BolC4t26175H' => 'bol', 'BolC6t37974H' => 'bol', 'BolC6t37975H' => 'bol', 'BolC7t45765H' => 'bol', 'BolC8t51286H' => 'bol', 'BolC9t55948H' => 'bol', 'BolC9t57078H' => 'bol', 'BraA02t06242Z' => 'bra', 'BraA04t16882Z' => 'bra', 'BraA07t30231Z' => 'bra', 'BraA07t30232Z' => 'bra', 'BraA09t37959Z' => 'bra', 'BraA09t40834Z' => 'bra', 'BraA10t43089Z' => 'bra', 'C02p19590' => 'bna', 'C04p45860' => 'bna', 'C04p45920' => 'bna', 'C06p06930' => 'bna', 'C06p28090' => 'bna', 'C07p00790' => 'bna', 'C07p52640' => 'bna', 'C08p37080' => 'bna', 'C09p41940' => 'bna', 'CAN.G1490.15' => 'can', 'CAN.G407.28' => 'can', 'CAN.G407.29' => 'can', 'CANSAT21G1393' => 'cansat', 'CANSAT54G2973' => 'cansat', 'CARHR172460' => 'chi', 'CARHR265490' => 'chi', 'Carub.0005s2008' => 'cru', 'Carub.0005s2887' => 'cru', 'Carub.0008s0152' => 'cru', 'Carub.0008s1264' => 'cru', 'Ca_09246_v3' => 'car', 'Ca_15468_v3' => 'car', 'Ca_15983_v3' => 'car', 'CBR_g8325' => 'cbr', 'CBR_g8856' => 'cbr', 'Cc00_g01070' => 'ccan', 'Cc00_g34340' => 'ccan', 'Cc02_g02500' => 'ccan', 'Cc02_g18490' => 'ccan', 'Cc05_g00870' => 'ccan', 'Cc05_g07020' => 'ccan', 'Cc05_g08880' => 'ccan', 'Cc07_g14460' => 'ccan', 'Cc11_g01030' => 'ccan', 'CDE06G1090' => 'cde', 'CDE08G1059' => 'cde', 'CDE11G0932' => 'cde', 'Cfa004912' => 'cfa', 'Cfa016279' => 'cfa', 'Cfa023476' => 'cfa', 'Ciclev10004659m.g' => 'ccl', 'Ciclev10019765m.g' => 'ccl', 'Ciclev10031253m.g' => 'ccl', 'CiPaw.05G263200' => 'cil', 'CiPaw.07G125500' => 'cil', 'CiPaw.08G082700' => 'cil', 'CiPaw.13G167600' => 'cil', 'ClCG01G007170' => 'cla', 'ClCG05G008280' => 'cla', 'ClCG05G008300' => 'cla', 'ClCG07G015700' => 'cla', 'COL.COLO4_23130' => 'col', 'COL.COLO4_36928' => 'col', 'Cpa.g.sc107.92' => 'cpa', 'Cpa.g.sc107.96' => 'cpa', 'Cpa.g.sc285.2' => 'cpa', 'Cre07.g351300' => 'cre', 'Cre09.g406200' => 'cre', 'Cre10.g429100' => 'cre', 'Cre12.g549850' => 'cre', 'CsaV3_3G018830' => 'csa', 'CsaV3_4G003400' => 'csa', 'CsaV3_5G018610' => 'csa', 'CSS0001759' => 'camsi', 'CSS0006615' => 'camsi', 'CSS0009156' => 'camsi', 'CSS0016541' => 'camsi', 'CSS0017075' => 'camsi', 'CSS0043276' => 'camsi', 'CSS0049825' => 'camsi', 'DCAR_002557' => 'dca', 'DCAR_009384' => 'dca', 'DCAR_014517' => 'dca', 'Dinv12081' => 'din', 'Dinv28396' => 'din', 'Dinv29495' => 'din', 'Dinv33171' => 'din', 'Dinv35240' => 'din', 'Duzib068G1356' => 'dzi', 'Duzib084G0352' => 'dzi', 'Duzib133G0171' => 'dzi', 'Duzib205G1919' => 'dzi', 'Duzib268G0962' => 'dzi', 'Duzib268G1140' => 'dzi', 'Duzib268G1550' => 'dzi', 'ECA236G4070' => 'eca', 'ECA238G2766' => 'eca', 'ECA248G2670' => 'eca', 'EL10Ac2g03345' => 'bvu', 'EL10Ac2g03885' => 'bvu', 'EL10Ac3g06719' => 'bvu', 'Eucgr.A02753' => 'egr', 'Eucgr.J00690' => 'egr', 'Eucgr.K00563' => 'egr', 'FAN02G1769' => 'fan', 'FAN04G1960' => 'fan', 'FAN05G0319' => 'fan', 'FAN05G3683' => 'fan', 'FAN05G4243' => 'fan', 'FAN05G5483' => 'fan', 'FAN07G2033' => 'fan', 'FAN08G3530' => 'fan', 'FAN09G0530' => 'fan', 'FAN09G0656' => 'fan', 'FAN09G2421' => 'fan', 'FAN12G1773' => 'fan', 'FAN13G2235' => 'fan', 'FAN14G4573' => 'fan', 'FAN14G4931' => 'fan', 'FAN17G1356' => 'fan', 'FAN24G2739' => 'fan', 'FvH4_2g20861' => 'fve', 'FvH4_2g20862' => 'fve', 'FvH4_4g21680' => 'fve', 'FvH4_5g00340' => 'fve', 'FvH4_6g31250' => 'fve', 'FvH4_6g47400' => 'fve', 'Glyma.03G224500' => 'gma', 'Glyma.09G133200' => 'gma', 'Glyma.14G153800' => 'gma', 'Glyma.16G179800' => 'gma', 'Glyma.19G221400' => 'gma', 'Gohir.A06G209000' => 'ghi', 'Gohir.A12G120000' => 'ghi', 'Gohir.A12G255700' => 'ghi', 'Gohir.D02G104232' => 'ghi', 'Gohir.D04G113650' => 'ghi', 'Gohir.D05G353500' => 'ghi', 'Gohir.D06G146050' => 'ghi', 'Gohir.D06G151800' => 'ghi', 'Gohir.D06G212000' => 'ghi', 'Gohir.D07G127900' => 'ghi', 'Gohir.D12G086500' => 'ghi', 'Gohir.D12G123600' => 'ghi', 'Gohir.D12G140050' => 'ghi', 'Gohir.D12G257100' => 'ghi', 'Gohir.D13G173600' => 'ghi', 'Gorai.001G106400' => 'gra', 'Gorai.005G118300' => 'gra', 'Gorai.006G182200' => 'gra', 'Gorai.008G134700' => 'gra', 'Gorai.008G151500' => 'gra', 'Gorai.008G275300' => 'gra', 'Gorai.009G386000' => 'gra', 'Gorai.010G177100' => 'gra', 'Gorai.010G177200' => 'gra', 'Gorai.010G254000' => 'gra', 'GSVIVG01028250001' => 'vvi', 'GSVIVG01028877001' => 'vvi', 'HanXRQChr04g0120461' => 'han', 'HanXRQChr07g0206941' => 'han', 'HanXRQChr15g0480911' => 'han', 'Haze_00033' => 'cav', 'Haze_05147' => 'cav', 'Haze_26683' => 'cav', 'Hma1.2p1_0227F.1_g096120' => 'hma', 'Hma1.2p1_0227F.1_g096130' => 'hma', 'Hma1.2p1_0327F.1_g126300' => 'hma', 'Hma1.2p1_0327F.1_g126310' => 'hma', 'Hma1.2p1_0484F.1_g162960' => 'hma', 'Hma1.2p1_0484F.1_g162965' => 'hma', 'Hma1.2p1_0636F.1_g193340' => 'hma', 'HPP92_001179' => 'vpl', 'HPP92_001947' => 'vpl', 'HPP92_015650' => 'vpl', 'HPP92_015654' => 'vpl', 'HPP92_028053' => 'vpl', 'Hund12464' => 'sun', 'Hund19272' => 'sun', 'Lalb_Chr02g0141201' => 'lal', 'Lalb_Chr02g0141421' => 'lal', 'Lalb_Chr15g0077891' => 'lal', 'Lj1C1004T3' => 'lonja', 'Lj1g0011311' => 'lja', 'Lj2g0010468' => 'lja', 'Lj2g0023395' => 'lja', 'Lj3C841G7' => 'lonja', 'Lj6A703T91' => 'lonja', 'Lj6g0016572' => 'lja', 'Lsat_1_v5_gn_2_131140' => 'lsa', 'Lsat_1_v5_gn_8_103640' => 'lsa', 'Lsat_1_v5_gn_9_93401' => 'lsa', 'Manes.01G235100' => 'mes', 'Manes.14G023300' => 'mes', 'Mapoly0025s0131' => 'mpo', 'Mapoly0051s0001' => 'mpo', 'MBI04_g21147_MAGBIO' => 'mbi', 'MBI04_g21149_MAGBIO' => 'mbi', 'MBI04_g21150_MAGBIO' => 'mbi', 'MBI04_g30786_MAGBIO' => 'mbi', 'MBI14_g06389_MAGBIO' => 'mbi', 'MBI18_g10371_MAGBIO' => 'mbi', 'MCO06G048' => 'mco', 'MCO14G216' => 'mco', 'MD01G1206900' => 'mdo', 'MD07G1277600' => 'mdo', 'MD07G1277700' => 'mdo', 'MD13G1156800' => 'mdo', 'MD16G1134100' => 'mdo', 'Medtr3g048190' => 'mtr', 'Medtr3g100910' => 'mtr', 'Medtr3g114550' => 'mtr', 'Medtr3g114570' => 'mtr', 'Medtr7g110660' => 'mtr', 'MELO3C005193.2' => 'cme', 'MELO3C017711.2' => 'cme', 'MELO3C019492.2' => 'cme', 'MELO3C029008.2' => 'cme', 'Migut.D02441' => 'egut', 'Migut.F01092' => 'egut', 'Migut.N02489' => 'egut', 'MSTRG.18762' => 'ama', 'MSTRG.21039' => 'ama', 'Nitab4.5_0000172g1620' => 'nta', 'Nitab4.5_0000232g0190' => 'nta', 'Nitab4.5_0000373g0210' => 'nta', 'Nitab4.5_0001611g0080' => 'nta', 'Nitab4.5_0002322g0120' => 'nta', 'Nitab4.5_0002322g0150' => 'nta', 'Nitab4.5_0004217g0010' => 'nta', 'Nitab4.5_0005056g0110' => 'nta', 'Nitab4.5_0006185g0010' => 'nta', 'Nitab4.5_0006185g0030' => 'nta', 'Nitab4.5_0011429g0010' => 'nta', 'Nn1g01600' => 'nnu', 'Nn1g09397' => 'nnu', 'Nn7g37405' => 'nnu', 'Oeu007521.3' => 'oeu', 'Oeu033106.1' => 'oeu', 'Oeu038081.1' => 'oeu', 'Oeu045369.1' => 'oeu', 'Os07g0165000' => 'osa', 'Os12g0443700' => 'osa', 'Peaxi162Scf00045g00024' => 'pax', 'Peaxi162Scf00207g00533' => 'pax', 'Peaxi162Scf00647g00325' => 'pax', 'PGR042G0190' => 'pgr', 'PGR142G3315' => 'pgr', 'PGSC0003DMG400014136' => 'stu', 'PGSC0003DMG400027526' => 'stu', 'PGSC0003DMG400028502' => 'stu', 'Phvul.001G218300' => 'pvu', 'Phvul.004G109800' => 'pvu', 'Potri.002G187000' => 'ptr', 'Potri.004G078866' => 'ptr', 'Potri.004G078932' => 'ptr', 'Potri.014G112400' => 'ptr', 'Potri.017G142500' => 'ptr', 'Pp3c21_580' => 'ppa', 'Pp3c2_3850' => 'ppa', 'PRCOL_00004237' => 'pco', 'PRCOL_00007039' => 'pco', 'Prupe.1G103500' => 'ppe', 'Prupe.2G299500' => 'ppe', 'Prupe.5G076000' => 'ppe', 'Prupe.8G138800' => 'ppe', 'Psat3g016680' => 'psa', 'Psat5g012360' => 'psa', 'Psat5g045320' => 'psa', 'Psat7g034480' => 'psa', 'PSO173G0115' => 'pso', 'PSO357G0154' => 'pso', 'PSO384G2916' => 'pso', 'PSO541G3847' => 'pso', 'PSO675G7606' => 'pso', 'QL09p013112' => 'qlo', 'QL10p022575' => 'qlo', 'QL11p011484' => 'qlo', 'RcHm_v2.0_Chr1g0313171' => 'rch', 'RcHm_v2.0_Chr2g0137801' => 'rch', 'RcHm_v2.0_Chr2g0166461' => 'rch', 'RcHm_v2.0_Chr4g0427891' => 'rch', 'RcHm_v2.0_Chr5g0012941' => 'rch', 'RcHm_v2.0_Chr5g0012951' => 'rch', 'RcHm_v2.0_Chr5g0080771' => 'rch', 'RcHm_v2.0_Chr6g0261561' => 'rch', 'RcHm_v2.0_Chr6g0287271' => 'rch', 'RcHm_v2.0_Chr7g0202211' => 'rch', 'Rhsim01G0000400' => 'rsi', 'Rhsim02G0055200' => 'rsi', 'Rhsim09G0200200' => 'rsi', 'Sabra04G0052400' => 'sbr', 'Sabra14G0082700' => 'sbr', 'Sabra17G0119400' => 'sbr', 'SalBow2G1075' => 'sbo', 'SalBow2G2133' => 'sbo', 'SalBow3G3029' => 'sbo', 'SalBow6G3314' => 'sbo', 'Sc09g0007270' => 'sci', 'Sc18g0006170' => 'sci', 'Sc25g0004870' => 'sci', 'Sed0015133' => 'sed', 'Sed0018120' => 'sed', 'Sed0023675' => 'sed', 'SEGI_03261' => 'sgi', 'SEGI_11320' => 'sgi', 'SGA_v2.0_scaffold10G05300' => 'sas', 'SGA_v2.0_scaffold147G36388' => 'sas', 'SGA_v2.0_scaffold22G09857' => 'sas', 'SGA_v2.0_scaffold25G10876' => 'sas', 'SGA_v2.0_scaffold262G45927' => 'sas', 'SGA_v2.0_scaffold87G27134' => 'sas', 'SMO114G0131' => 'smo', 'SMO367G0299' => 'smo', 'Solyc01g096870.4' => 'sly', 'Solyc03g117330.4' => 'sly', 'Solyc06g068320.3' => 'sly', 'Sopen01g040580' => 'spe', 'Sopen03g036220' => 'spe', 'Sopen06g025590' => 'spe', 'Sp5g01250' => 'spa', 'Sp6g14710' => 'spa', 'TAR365G0316' => 'tar', 'TAR633G0527' => 'tar', 'TAR636G1793' => 'tar', 'THA.LOC104811964' => 'tha', 'THA.LOC104817431' => 'tha', 'Thecc.01G325200' => 'tca', 'Thecc.02G038600' => 'tca', 'Thecc.02G185700' => 'tca', 'Thecc.03G182500' => 'tca', 'Thecc.04G208500' => 'tca', 'Thhalv10005900m.g' => 'esa', 'Thhalv10011470m.g' => 'esa', 'Thhalv10013193m.g' => 'esa', 'TPR.G2469' => 'tpr', 'TPR.G26044' => 'tpr', 'TWI14G0872' => 'twi', 'TWI14G1260' => 'twi', 'TWI32G0004' => 'twi', 'TWI39G0800' => 'twi', 'TWI59G1486' => 'twi', 'unitig_27.g25116' => 'ugi', 'unitig_60.g25549' => 'ugi', 'vmacro09819' => 'vma', 'vmacro18594' => 'vma', 'VMungo0464G0041' => 'vmu', 'VMungo0464G1027' => 'vmu', 'VMungo0985G0009' => 'vmu', 'VMungo1127G0793' => 'vmu', 'VMungo1383G1850' => 'vmu', 'Zm00001eb073240' => 'zma', 'Zm00001eb202580' => 'zma', 'Zm00001eb300750' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001410' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001410' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001410' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001410' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001410', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '445', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p11770' => 'bna', 'A04p12210' => 'bna', 'A07p25850' => 'bna', 'A09p01100' => 'bna', 'A09p01110' => 'bna', 'A09p54220' => 'bna', 'A10p10070' => 'bna', 'A10p10080' => 'bna', 'Aa31LG10G16100' => 'aar', 'Aa31LG3G8870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3302' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.618' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.856' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2217' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2760' => 'aag', 'Actinidia03133' => 'ach', 'Actinidia06405' => 'ach', 'Actinidia20863' => 'ach', 'Actinidia20965' => 'ach', 'Actinidia21340' => 'ach', 'Actinidia21341' => 'ach', 'Actinidia31834' => 'ach', 'Actinidia34148' => 'ach', 'Ah.02g126370' => 'amhyb', 'Ah.04g153520' => 'amhyb', 'Ah.16g106580' => 'amhyb', 'AL5G29550' => 'aly', 'AL5G44840' => 'aly', 'AL7G11820' => 'aly', 'AL8G26980' => 'aly', 'Aqoxy2G01498' => 'aox', 'Aqoxy5G01895' => 'aox', 'Aqoxy6G01697' => 'aox', 'Aqoxy6G01698' => 'aox', 'Aqoxy7G00253' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18GXDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2022SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA6YY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8GG75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KLDP20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYSL7K' => 'arhy', 'AT3G62120' => 'ath', 'AT5G10880' => 'ath', 'AT5G52520' => 'ath', 'ATR0661G435' => 'atr', 'ATR0730G099' => 'atr', 'Atru.chr1.370' => 'acertr', 'Atru.chr1.387' => 'acertr', 'Atru.chr1.3904' => 'acertr', 'Atru.chr4.407' => 'acertr', 'Atru.chr5.3423' => 'acertr', 'Atru.ctg97_1.1' => 'acertr', 'AUR62012943' => 'cqu', 'AUR62027143' => 'cqu', 'AUR62027146' => 'cqu', 'AUR62027147' => 'cqu', 'AUR62029493' => 'cqu', 'AUR62035357' => 'cqu', 'AUR62035889' => 'cqu', 'AUR62037623' => 'cqu', 'AUR62040861' => 'cqu', 'BcaB02g07355' => 'bca', 'BcaB02g07357' => 'bca', 'BcaB05g21963' => 'bca', 'BcaB05g23847' => 'bca', 'BcaB06g27310' => 'bca', 'BcaB06g27314' => 'bca', 'BcaB06g27315' => 'bca', 'BcaB06g27332' => 'bca', 'BcaB08g35606' => 'bca', 'BcaC02g10103' => 'bca', 'BcaC03g14524' => 'bca', 'BcaC04g20579' => 'bca', 'BcaC05g25569' => 'bca', 'BcaC07g40705' => 'bca', 'BcaC08g43334' => 'bca', 'BcaC08g45184' => 'bca', 'BcaC08g45185' => 'bca', 'BcaNung01443' => 'bca', 'BcaNung07179' => 'bca', 'BNapus_Darmor_BZH_scaffold_232p00120' => 'bna', 'BolC2t08096H' => 'bol', 'BolC4t24837H' => 'bol', 'BolC4t26172H' => 'bol', 'BolC4t26174H' => 'bol', 'BolC4t26175H' => 'bol', 'BolC6t37974H' => 'bol', 'BolC6t37975H' => 'bol', 'BolC7t45765H' => 'bol', 'BolC8t51286H' => 'bol', 'BolC9t55948H' => 'bol', 'BolC9t57078H' => 'bol', 'BraA02t06242Z' => 'bra', 'BraA04t16882Z' => 'bra', 'BraA07t30231Z' => 'bra', 'BraA07t30232Z' => 'bra', 'BraA09t37959Z' => 'bra', 'BraA09t40834Z' => 'bra', 'BraA10t43089Z' => 'bra', 'C02p19590' => 'bna', 'C04p45860' => 'bna', 'C04p45920' => 'bna', 'C06p06930' => 'bna', 'C06p28090' => 'bna', 'C07p00790' => 'bna', 'C07p52640' => 'bna', 'C08p37080' => 'bna', 'C09p41940' => 'bna', 'CAN.G1490.15' => 'can', 'CAN.G407.28' => 'can', 'CAN.G407.29' => 'can', 'CANSAT21G1393' => 'cansat', 'CANSAT54G2973' => 'cansat', 'CARHR172460' => 'chi', 'CARHR265490' => 'chi', 'Carub.0005s2008' => 'cru', 'Carub.0005s2887' => 'cru', 'Carub.0008s0152' => 'cru', 'Carub.0008s1264' => 'cru', 'Ca_09246_v3' => 'car', 'Ca_15468_v3' => 'car', 'Ca_15983_v3' => 'car', 'CBR_g8325' => 'cbr', 'CBR_g8856' => 'cbr', 'Cc00_g01070' => 'ccan', 'Cc00_g34340' => 'ccan', 'Cc02_g02500' => 'ccan', 'Cc02_g18490' => 'ccan', 'Cc05_g00870' => 'ccan', 'Cc05_g07020' => 'ccan', 'Cc05_g08880' => 'ccan', 'Cc07_g14460' => 'ccan', 'Cc11_g01030' => 'ccan', 'CDE06G1090' => 'cde', 'CDE08G1059' => 'cde', 'CDE11G0932' => 'cde', 'Cfa004912' => 'cfa', 'Cfa016279' => 'cfa', 'Cfa023476' => 'cfa', 'Ciclev10004659m.g' => 'ccl', 'Ciclev10019765m.g' => 'ccl', 'Ciclev10031253m.g' => 'ccl', 'CiPaw.05G263200' => 'cil', 'CiPaw.07G125500' => 'cil', 'CiPaw.08G082700' => 'cil', 'CiPaw.13G167600' => 'cil', 'ClCG01G007170' => 'cla', 'ClCG05G008280' => 'cla', 'ClCG05G008300' => 'cla', 'ClCG07G015700' => 'cla', 'COL.COLO4_23130' => 'col', 'COL.COLO4_36928' => 'col', 'Cpa.g.sc107.92' => 'cpa', 'Cpa.g.sc107.96' => 'cpa', 'Cpa.g.sc285.2' => 'cpa', 'Cre07.g351300' => 'cre', 'Cre09.g406200' => 'cre', 'Cre10.g429100' => 'cre', 'Cre12.g549850' => 'cre', 'CsaV3_3G018830' => 'csa', 'CsaV3_4G003400' => 'csa', 'CsaV3_5G018610' => 'csa', 'CSS0001759' => 'camsi', 'CSS0006615' => 'camsi', 'CSS0009156' => 'camsi', 'CSS0016541' => 'camsi', 'CSS0017075' => 'camsi', 'CSS0043276' => 'camsi', 'CSS0049825' => 'camsi', 'DCAR_002557' => 'dca', 'DCAR_009384' => 'dca', 'DCAR_014517' => 'dca', 'Dinv12081' => 'din', 'Dinv28396' => 'din', 'Dinv29495' => 'din', 'Dinv33171' => 'din', 'Dinv35240' => 'din', 'Duzib068G1356' => 'dzi', 'Duzib084G0352' => 'dzi', 'Duzib133G0171' => 'dzi', 'Duzib205G1919' => 'dzi', 'Duzib268G0962' => 'dzi', 'Duzib268G1140' => 'dzi', 'Duzib268G1550' => 'dzi', 'ECA236G4070' => 'eca', 'ECA238G2766' => 'eca', 'ECA248G2670' => 'eca', 'EL10Ac2g03345' => 'bvu', 'EL10Ac2g03885' => 'bvu', 'EL10Ac3g06719' => 'bvu', 'Eucgr.A02753' => 'egr', 'Eucgr.J00690' => 'egr', 'Eucgr.K00563' => 'egr', 'FAN02G1769' => 'fan', 'FAN04G1960' => 'fan', 'FAN05G0319' => 'fan', 'FAN05G3683' => 'fan', 'FAN05G4243' => 'fan', 'FAN05G5483' => 'fan', 'FAN07G2033' => 'fan', 'FAN08G3530' => 'fan', 'FAN09G0530' => 'fan', 'FAN09G0656' => 'fan', 'FAN09G2421' => 'fan', 'FAN12G1773' => 'fan', 'FAN13G2235' => 'fan', 'FAN14G4573' => 'fan', 'FAN14G4931' => 'fan', 'FAN17G1356' => 'fan', 'FAN24G2739' => 'fan', 'FvH4_2g20861' => 'fve', 'FvH4_2g20862' => 'fve', 'FvH4_4g21680' => 'fve', 'FvH4_5g00340' => 'fve', 'FvH4_6g31250' => 'fve', 'FvH4_6g47400' => 'fve', 'Glyma.03G224500' => 'gma', 'Glyma.09G133200' => 'gma', 'Glyma.14G153800' => 'gma', 'Glyma.16G179800' => 'gma', 'Glyma.19G221400' => 'gma', 'Gohir.A06G209000' => 'ghi', 'Gohir.A12G120000' => 'ghi', 'Gohir.A12G255700' => 'ghi', 'Gohir.D02G104232' => 'ghi', 'Gohir.D04G113650' => 'ghi', 'Gohir.D05G353500' => 'ghi', 'Gohir.D06G146050' => 'ghi', 'Gohir.D06G151800' => 'ghi', 'Gohir.D06G212000' => 'ghi', 'Gohir.D07G127900' => 'ghi', 'Gohir.D12G086500' => 'ghi', 'Gohir.D12G123600' => 'ghi', 'Gohir.D12G140050' => 'ghi', 'Gohir.D12G257100' => 'ghi', 'Gohir.D13G173600' => 'ghi', 'Gorai.001G106400' => 'gra', 'Gorai.005G118300' => 'gra', 'Gorai.006G182200' => 'gra', 'Gorai.008G134700' => 'gra', 'Gorai.008G151500' => 'gra', 'Gorai.008G275300' => 'gra', 'Gorai.009G386000' => 'gra', 'Gorai.010G177100' => 'gra', 'Gorai.010G177200' => 'gra', 'Gorai.010G254000' => 'gra', 'GSVIVG01028250001' => 'vvi', 'GSVIVG01028877001' => 'vvi', 'HanXRQChr04g0120461' => 'han', 'HanXRQChr07g0206941' => 'han', 'HanXRQChr15g0480911' => 'han', 'Haze_00033' => 'cav', 'Haze_05147' => 'cav', 'Haze_26683' => 'cav', 'Hma1.2p1_0227F.1_g096120' => 'hma', 'Hma1.2p1_0227F.1_g096130' => 'hma', 'Hma1.2p1_0327F.1_g126300' => 'hma', 'Hma1.2p1_0327F.1_g126310' => 'hma', 'Hma1.2p1_0484F.1_g162960' => 'hma', 'Hma1.2p1_0484F.1_g162965' => 'hma', 'Hma1.2p1_0636F.1_g193340' => 'hma', 'HPP92_001179' => 'vpl', 'HPP92_001947' => 'vpl', 'HPP92_015650' => 'vpl', 'HPP92_015654' => 'vpl', 'HPP92_028053' => 'vpl', 'Hund12464' => 'sun', 'Hund19272' => 'sun', 'Lalb_Chr02g0141201' => 'lal', 'Lalb_Chr02g0141421' => 'lal', 'Lalb_Chr15g0077891' => 'lal', 'Lj1C1004T3' => 'lonja', 'Lj1g0011311' => 'lja', 'Lj2g0010468' => 'lja', 'Lj2g0023395' => 'lja', 'Lj3C841G7' => 'lonja', 'Lj6A703T91' => 'lonja', 'Lj6g0016572' => 'lja', 'Lsat_1_v5_gn_2_131140' => 'lsa', 'Lsat_1_v5_gn_8_103640' => 'lsa', 'Lsat_1_v5_gn_9_93401' => 'lsa', 'Manes.01G235100' => 'mes', 'Manes.14G023300' => 'mes', 'Mapoly0025s0131' => 'mpo', 'Mapoly0051s0001' => 'mpo', 'MBI04_g21147_MAGBIO' => 'mbi', 'MBI04_g21149_MAGBIO' => 'mbi', 'MBI04_g21150_MAGBIO' => 'mbi', 'MBI04_g30786_MAGBIO' => 'mbi', 'MBI14_g06389_MAGBIO' => 'mbi', 'MBI18_g10371_MAGBIO' => 'mbi', 'MCO06G048' => 'mco', 'MCO14G216' => 'mco', 'MD01G1206900' => 'mdo', 'MD07G1277600' => 'mdo', 'MD07G1277700' => 'mdo', 'MD13G1156800' => 'mdo', 'MD16G1134100' => 'mdo', 'Medtr3g048190' => 'mtr', 'Medtr3g100910' => 'mtr', 'Medtr3g114550' => 'mtr', 'Medtr3g114570' => 'mtr', 'Medtr7g110660' => 'mtr', 'MELO3C005193.2' => 'cme', 'MELO3C017711.2' => 'cme', 'MELO3C019492.2' => 'cme', 'MELO3C029008.2' => 'cme', 'Migut.D02441' => 'egut', 'Migut.F01092' => 'egut', 'Migut.N02489' => 'egut', 'MSTRG.18762' => 'ama', 'MSTRG.21039' => 'ama', 'Nitab4.5_0000172g1620' => 'nta', 'Nitab4.5_0000232g0190' => 'nta', 'Nitab4.5_0000373g0210' => 'nta', 'Nitab4.5_0001611g0080' => 'nta', 'Nitab4.5_0002322g0120' => 'nta', 'Nitab4.5_0002322g0150' => 'nta', 'Nitab4.5_0004217g0010' => 'nta', 'Nitab4.5_0005056g0110' => 'nta', 'Nitab4.5_0006185g0010' => 'nta', 'Nitab4.5_0006185g0030' => 'nta', 'Nitab4.5_0011429g0010' => 'nta', 'Nn1g01600' => 'nnu', 'Nn1g09397' => 'nnu', 'Nn7g37405' => 'nnu', 'Oeu007521.3' => 'oeu', 'Oeu033106.1' => 'oeu', 'Oeu038081.1' => 'oeu', 'Oeu045369.1' => 'oeu', 'Os07g0165000' => 'osa', 'Os12g0443700' => 'osa', 'Peaxi162Scf00045g00024' => 'pax', 'Peaxi162Scf00207g00533' => 'pax', 'Peaxi162Scf00647g00325' => 'pax', 'PGR042G0190' => 'pgr', 'PGR142G3315' => 'pgr', 'PGSC0003DMG400014136' => 'stu', 'PGSC0003DMG400027526' => 'stu', 'PGSC0003DMG400028502' => 'stu', 'Phvul.001G218300' => 'pvu', 'Phvul.004G109800' => 'pvu', 'Potri.002G187000' => 'ptr', 'Potri.004G078866' => 'ptr', 'Potri.004G078932' => 'ptr', 'Potri.014G112400' => 'ptr', 'Potri.017G142500' => 'ptr', 'Pp3c21_580' => 'ppa', 'Pp3c2_3850' => 'ppa', 'PRCOL_00004237' => 'pco', 'PRCOL_00007039' => 'pco', 'Prupe.1G103500' => 'ppe', 'Prupe.2G299500' => 'ppe', 'Prupe.5G076000' => 'ppe', 'Prupe.8G138800' => 'ppe', 'Psat3g016680' => 'psa', 'Psat5g012360' => 'psa', 'Psat5g045320' => 'psa', 'Psat7g034480' => 'psa', 'PSO173G0115' => 'pso', 'PSO357G0154' => 'pso', 'PSO384G2916' => 'pso', 'PSO541G3847' => 'pso', 'PSO675G7606' => 'pso', 'QL09p013112' => 'qlo', 'QL10p022575' => 'qlo', 'QL11p011484' => 'qlo', 'RcHm_v2.0_Chr1g0313171' => 'rch', 'RcHm_v2.0_Chr2g0137801' => 'rch', 'RcHm_v2.0_Chr2g0166461' => 'rch', 'RcHm_v2.0_Chr4g0427891' => 'rch', 'RcHm_v2.0_Chr5g0012941' => 'rch', 'RcHm_v2.0_Chr5g0012951' => 'rch', 'RcHm_v2.0_Chr5g0080771' => 'rch', 'RcHm_v2.0_Chr6g0261561' => 'rch', 'RcHm_v2.0_Chr6g0287271' => 'rch', 'RcHm_v2.0_Chr7g0202211' => 'rch', 'Rhsim01G0000400' => 'rsi', 'Rhsim02G0055200' => 'rsi', 'Rhsim09G0200200' => 'rsi', 'Sabra04G0052400' => 'sbr', 'Sabra14G0082700' => 'sbr', 'Sabra17G0119400' => 'sbr', 'SalBow2G1075' => 'sbo', 'SalBow2G2133' => 'sbo', 'SalBow3G3029' => 'sbo', 'SalBow6G3314' => 'sbo', 'Sc09g0007270' => 'sci', 'Sc18g0006170' => 'sci', 'Sc25g0004870' => 'sci', 'Sed0015133' => 'sed', 'Sed0018120' => 'sed', 'Sed0023675' => 'sed', 'SEGI_03261' => 'sgi', 'SEGI_11320' => 'sgi', 'SGA_v2.0_scaffold10G05300' => 'sas', 'SGA_v2.0_scaffold147G36388' => 'sas', 'SGA_v2.0_scaffold22G09857' => 'sas', 'SGA_v2.0_scaffold25G10876' => 'sas', 'SGA_v2.0_scaffold262G45927' => 'sas', 'SGA_v2.0_scaffold87G27134' => 'sas', 'SMO114G0131' => 'smo', 'SMO367G0299' => 'smo', 'Solyc01g096870.4' => 'sly', 'Solyc03g117330.4' => 'sly', 'Solyc06g068320.3' => 'sly', 'Sopen01g040580' => 'spe', 'Sopen03g036220' => 'spe', 'Sopen06g025590' => 'spe', 'Sp5g01250' => 'spa', 'Sp6g14710' => 'spa', 'TAR365G0316' => 'tar', 'TAR633G0527' => 'tar', 'TAR636G1793' => 'tar', 'THA.LOC104811964' => 'tha', 'THA.LOC104817431' => 'tha', 'Thecc.01G325200' => 'tca', 'Thecc.02G038600' => 'tca', 'Thecc.02G185700' => 'tca', 'Thecc.03G182500' => 'tca', 'Thecc.04G208500' => 'tca', 'Thhalv10005900m.g' => 'esa', 'Thhalv10011470m.g' => 'esa', 'Thhalv10013193m.g' => 'esa', 'TPR.G2469' => 'tpr', 'TPR.G26044' => 'tpr', 'TWI14G0872' => 'twi', 'TWI14G1260' => 'twi', 'TWI32G0004' => 'twi', 'TWI39G0800' => 'twi', 'TWI59G1486' => 'twi', 'unitig_27.g25116' => 'ugi', 'unitig_60.g25549' => 'ugi', 'vmacro09819' => 'vma', 'vmacro18594' => 'vma', 'VMungo0464G0041' => 'vmu', 'VMungo0464G1027' => 'vmu', 'VMungo0985G0009' => 'vmu', 'VMungo1127G0793' => 'vmu', 'VMungo1383G1850' => 'vmu', 'Zm00001eb073240' => 'zma', 'Zm00001eb202580' => 'zma', 'Zm00001eb300750' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001410', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001410' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001410', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '445', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001410' ) ), 'genes' => array( 'A02p11770' => 'bna', 'A04p12210' => 'bna', 'A07p25850' => 'bna', 'A09p01100' => 'bna', 'A09p01110' => 'bna', 'A09p54220' => 'bna', 'A10p10070' => 'bna', 'A10p10080' => 'bna', 'Aa31LG10G16100' => 'aar', 'Aa31LG3G8870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3302' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.618' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.856' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2217' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2760' => 'aag', 'Actinidia03133' => 'ach', 'Actinidia06405' => 'ach', 'Actinidia20863' => 'ach', 'Actinidia20965' => 'ach', 'Actinidia21340' => 'ach', 'Actinidia21341' => 'ach', 'Actinidia31834' => 'ach', 'Actinidia34148' => 'ach', 'Ah.02g126370' => 'amhyb', 'Ah.04g153520' => 'amhyb', 'Ah.16g106580' => 'amhyb', 'AL5G29550' => 'aly', 'AL5G44840' => 'aly', 'AL7G11820' => 'aly', 'AL8G26980' => 'aly', 'Aqoxy2G01498' => 'aox', 'Aqoxy5G01895' => 'aox', 'Aqoxy6G01697' => 'aox', 'Aqoxy6G01698' => 'aox', 'Aqoxy7G00253' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18GXDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2022SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA6YY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8GG75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KLDP20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYSL7K' => 'arhy', 'AT3G62120' => 'ath', 'AT5G10880' => 'ath', 'AT5G52520' => 'ath', 'ATR0661G435' => 'atr', 'ATR0730G099' => 'atr', 'Atru.chr1.370' => 'acertr', 'Atru.chr1.387' => 'acertr', 'Atru.chr1.3904' => 'acertr', 'Atru.chr4.407' => 'acertr', 'Atru.chr5.3423' => 'acertr', 'Atru.ctg97_1.1' => 'acertr', 'AUR62012943' => 'cqu', 'AUR62027143' => 'cqu', 'AUR62027146' => 'cqu', 'AUR62027147' => 'cqu', 'AUR62029493' => 'cqu', 'AUR62035357' => 'cqu', 'AUR62035889' => 'cqu', 'AUR62037623' => 'cqu', 'AUR62040861' => 'cqu', 'BcaB02g07355' => 'bca', 'BcaB02g07357' => 'bca', 'BcaB05g21963' => 'bca', 'BcaB05g23847' => 'bca', 'BcaB06g27310' => 'bca', 'BcaB06g27314' => 'bca', 'BcaB06g27315' => 'bca', 'BcaB06g27332' => 'bca', 'BcaB08g35606' => 'bca', 'BcaC02g10103' => 'bca', 'BcaC03g14524' => 'bca', 'BcaC04g20579' => 'bca', 'BcaC05g25569' => 'bca', 'BcaC07g40705' => 'bca', 'BcaC08g43334' => 'bca', 'BcaC08g45184' => 'bca', 'BcaC08g45185' => 'bca', 'BcaNung01443' => 'bca', 'BcaNung07179' => 'bca', 'BNapus_Darmor_BZH_scaffold_232p00120' => 'bna', 'BolC2t08096H' => 'bol', 'BolC4t24837H' => 'bol', 'BolC4t26172H' => 'bol', 'BolC4t26174H' => 'bol', 'BolC4t26175H' => 'bol', 'BolC6t37974H' => 'bol', 'BolC6t37975H' => 'bol', 'BolC7t45765H' => 'bol', 'BolC8t51286H' => 'bol', 'BolC9t55948H' => 'bol', 'BolC9t57078H' => 'bol', 'BraA02t06242Z' => 'bra', 'BraA04t16882Z' => 'bra', 'BraA07t30231Z' => 'bra', 'BraA07t30232Z' => 'bra', 'BraA09t37959Z' => 'bra', 'BraA09t40834Z' => 'bra', 'BraA10t43089Z' => 'bra', 'C02p19590' => 'bna', 'C04p45860' => 'bna', 'C04p45920' => 'bna', 'C06p06930' => 'bna', 'C06p28090' => 'bna', 'C07p00790' => 'bna', 'C07p52640' => 'bna', 'C08p37080' => 'bna', 'C09p41940' => 'bna', 'CAN.G1490.15' => 'can', 'CAN.G407.28' => 'can', 'CAN.G407.29' => 'can', 'CANSAT21G1393' => 'cansat', 'CANSAT54G2973' => 'cansat', 'CARHR172460' => 'chi', 'CARHR265490' => 'chi', 'Carub.0005s2008' => 'cru', 'Carub.0005s2887' => 'cru', 'Carub.0008s0152' => 'cru', 'Carub.0008s1264' => 'cru', 'Ca_09246_v3' => 'car', 'Ca_15468_v3' => 'car', 'Ca_15983_v3' => 'car', 'CBR_g8325' => 'cbr', 'CBR_g8856' => 'cbr', 'Cc00_g01070' => 'ccan', 'Cc00_g34340' => 'ccan', 'Cc02_g02500' => 'ccan', 'Cc02_g18490' => 'ccan', 'Cc05_g00870' => 'ccan', 'Cc05_g07020' => 'ccan', 'Cc05_g08880' => 'ccan', 'Cc07_g14460' => 'ccan', 'Cc11_g01030' => 'ccan', 'CDE06G1090' => 'cde', 'CDE08G1059' => 'cde', 'CDE11G0932' => 'cde', 'Cfa004912' => 'cfa', 'Cfa016279' => 'cfa', 'Cfa023476' => 'cfa', 'Ciclev10004659m.g' => 'ccl', 'Ciclev10019765m.g' => 'ccl', 'Ciclev10031253m.g' => 'ccl', 'CiPaw.05G263200' => 'cil', 'CiPaw.07G125500' => 'cil', 'CiPaw.08G082700' => 'cil', 'CiPaw.13G167600' => 'cil', 'ClCG01G007170' => 'cla', 'ClCG05G008280' => 'cla', 'ClCG05G008300' => 'cla', 'ClCG07G015700' => 'cla', 'COL.COLO4_23130' => 'col', 'COL.COLO4_36928' => 'col', 'Cpa.g.sc107.92' => 'cpa', 'Cpa.g.sc107.96' => 'cpa', 'Cpa.g.sc285.2' => 'cpa', 'Cre07.g351300' => 'cre', 'Cre09.g406200' => 'cre', 'Cre10.g429100' => 'cre', 'Cre12.g549850' => 'cre', 'CsaV3_3G018830' => 'csa', 'CsaV3_4G003400' => 'csa', 'CsaV3_5G018610' => 'csa', 'CSS0001759' => 'camsi', 'CSS0006615' => 'camsi', 'CSS0009156' => 'camsi', 'CSS0016541' => 'camsi', 'CSS0017075' => 'camsi', 'CSS0043276' => 'camsi', 'CSS0049825' => 'camsi', 'DCAR_002557' => 'dca', 'DCAR_009384' => 'dca', 'DCAR_014517' => 'dca', 'Dinv12081' => 'din', 'Dinv28396' => 'din', 'Dinv29495' => 'din', 'Dinv33171' => 'din', 'Dinv35240' => 'din', 'Duzib068G1356' => 'dzi', 'Duzib084G0352' => 'dzi', 'Duzib133G0171' => 'dzi', 'Duzib205G1919' => 'dzi', 'Duzib268G0962' => 'dzi', 'Duzib268G1140' => 'dzi', 'Duzib268G1550' => 'dzi', 'ECA236G4070' => 'eca', 'ECA238G2766' => 'eca', 'ECA248G2670' => 'eca', 'EL10Ac2g03345' => 'bvu', 'EL10Ac2g03885' => 'bvu', 'EL10Ac3g06719' => 'bvu', 'Eucgr.A02753' => 'egr', 'Eucgr.J00690' => 'egr', 'Eucgr.K00563' => 'egr', 'FAN02G1769' => 'fan', 'FAN04G1960' => 'fan', 'FAN05G0319' => 'fan', 'FAN05G3683' => 'fan', 'FAN05G4243' => 'fan', 'FAN05G5483' => 'fan', 'FAN07G2033' => 'fan', 'FAN08G3530' => 'fan', 'FAN09G0530' => 'fan', 'FAN09G0656' => 'fan', 'FAN09G2421' => 'fan', 'FAN12G1773' => 'fan', 'FAN13G2235' => 'fan', 'FAN14G4573' => 'fan', 'FAN14G4931' => 'fan', 'FAN17G1356' => 'fan', 'FAN24G2739' => 'fan', 'FvH4_2g20861' => 'fve', 'FvH4_2g20862' => 'fve', 'FvH4_4g21680' => 'fve', 'FvH4_5g00340' => 'fve', 'FvH4_6g31250' => 'fve', 'FvH4_6g47400' => 'fve', 'Glyma.03G224500' => 'gma', 'Glyma.09G133200' => 'gma', 'Glyma.14G153800' => 'gma', 'Glyma.16G179800' => 'gma', 'Glyma.19G221400' => 'gma', 'Gohir.A06G209000' => 'ghi', 'Gohir.A12G120000' => 'ghi', 'Gohir.A12G255700' => 'ghi', 'Gohir.D02G104232' => 'ghi', 'Gohir.D04G113650' => 'ghi', 'Gohir.D05G353500' => 'ghi', 'Gohir.D06G146050' => 'ghi', 'Gohir.D06G151800' => 'ghi', 'Gohir.D06G212000' => 'ghi', 'Gohir.D07G127900' => 'ghi', 'Gohir.D12G086500' => 'ghi', 'Gohir.D12G123600' => 'ghi', 'Gohir.D12G140050' => 'ghi', 'Gohir.D12G257100' => 'ghi', 'Gohir.D13G173600' => 'ghi', 'Gorai.001G106400' => 'gra', 'Gorai.005G118300' => 'gra', 'Gorai.006G182200' => 'gra', 'Gorai.008G134700' => 'gra', 'Gorai.008G151500' => 'gra', 'Gorai.008G275300' => 'gra', 'Gorai.009G386000' => 'gra', 'Gorai.010G177100' => 'gra', 'Gorai.010G177200' => 'gra', 'Gorai.010G254000' => 'gra', 'GSVIVG01028250001' => 'vvi', 'GSVIVG01028877001' => 'vvi', 'HanXRQChr04g0120461' => 'han', 'HanXRQChr07g0206941' => 'han', 'HanXRQChr15g0480911' => 'han', 'Haze_00033' => 'cav', 'Haze_05147' => 'cav', 'Haze_26683' => 'cav', 'Hma1.2p1_0227F.1_g096120' => 'hma', 'Hma1.2p1_0227F.1_g096130' => 'hma', 'Hma1.2p1_0327F.1_g126300' => 'hma', 'Hma1.2p1_0327F.1_g126310' => 'hma', 'Hma1.2p1_0484F.1_g162960' => 'hma', 'Hma1.2p1_0484F.1_g162965' => 'hma', 'Hma1.2p1_0636F.1_g193340' => 'hma', 'HPP92_001179' => 'vpl', 'HPP92_001947' => 'vpl', 'HPP92_015650' => 'vpl', 'HPP92_015654' => 'vpl', 'HPP92_028053' => 'vpl', 'Hund12464' => 'sun', 'Hund19272' => 'sun', 'Lalb_Chr02g0141201' => 'lal', 'Lalb_Chr02g0141421' => 'lal', 'Lalb_Chr15g0077891' => 'lal', 'Lj1C1004T3' => 'lonja', 'Lj1g0011311' => 'lja', 'Lj2g0010468' => 'lja', 'Lj2g0023395' => 'lja', 'Lj3C841G7' => 'lonja', 'Lj6A703T91' => 'lonja', 'Lj6g0016572' => 'lja', 'Lsat_1_v5_gn_2_131140' => 'lsa', 'Lsat_1_v5_gn_8_103640' => 'lsa', 'Lsat_1_v5_gn_9_93401' => 'lsa', 'Manes.01G235100' => 'mes', 'Manes.14G023300' => 'mes', 'Mapoly0025s0131' => 'mpo', 'Mapoly0051s0001' => 'mpo', 'MBI04_g21147_MAGBIO' => 'mbi', 'MBI04_g21149_MAGBIO' => 'mbi', 'MBI04_g21150_MAGBIO' => 'mbi', 'MBI04_g30786_MAGBIO' => 'mbi', 'MBI14_g06389_MAGBIO' => 'mbi', 'MBI18_g10371_MAGBIO' => 'mbi', 'MCO06G048' => 'mco', 'MCO14G216' => 'mco', 'MD01G1206900' => 'mdo', 'MD07G1277600' => 'mdo', 'MD07G1277700' => 'mdo', 'MD13G1156800' => 'mdo', 'MD16G1134100' => 'mdo', 'Medtr3g048190' => 'mtr', 'Medtr3g100910' => 'mtr', 'Medtr3g114550' => 'mtr', 'Medtr3g114570' => 'mtr', 'Medtr7g110660' => 'mtr', 'MELO3C005193.2' => 'cme', 'MELO3C017711.2' => 'cme', 'MELO3C019492.2' => 'cme', 'MELO3C029008.2' => 'cme', 'Migut.D02441' => 'egut', 'Migut.F01092' => 'egut', 'Migut.N02489' => 'egut', 'MSTRG.18762' => 'ama', 'MSTRG.21039' => 'ama', 'Nitab4.5_0000172g1620' => 'nta', 'Nitab4.5_0000232g0190' => 'nta', 'Nitab4.5_0000373g0210' => 'nta', 'Nitab4.5_0001611g0080' => 'nta', 'Nitab4.5_0002322g0120' => 'nta', 'Nitab4.5_0002322g0150' => 'nta', 'Nitab4.5_0004217g0010' => 'nta', 'Nitab4.5_0005056g0110' => 'nta', 'Nitab4.5_0006185g0010' => 'nta', 'Nitab4.5_0006185g0030' => 'nta', 'Nitab4.5_0011429g0010' => 'nta', 'Nn1g01600' => 'nnu', 'Nn1g09397' => 'nnu', 'Nn7g37405' => 'nnu', 'Oeu007521.3' => 'oeu', 'Oeu033106.1' => 'oeu', 'Oeu038081.1' => 'oeu', 'Oeu045369.1' => 'oeu', 'Os07g0165000' => 'osa', 'Os12g0443700' => 'osa', 'Peaxi162Scf00045g00024' => 'pax', 'Peaxi162Scf00207g00533' => 'pax', 'Peaxi162Scf00647g00325' => 'pax', 'PGR042G0190' => 'pgr', 'PGR142G3315' => 'pgr', 'PGSC0003DMG400014136' => 'stu', 'PGSC0003DMG400027526' => 'stu', 'PGSC0003DMG400028502' => 'stu', 'Phvul.001G218300' => 'pvu', 'Phvul.004G109800' => 'pvu', 'Potri.002G187000' => 'ptr', 'Potri.004G078866' => 'ptr', 'Potri.004G078932' => 'ptr', 'Potri.014G112400' => 'ptr', 'Potri.017G142500' => 'ptr', 'Pp3c21_580' => 'ppa', 'Pp3c2_3850' => 'ppa', 'PRCOL_00004237' => 'pco', 'PRCOL_00007039' => 'pco', 'Prupe.1G103500' => 'ppe', 'Prupe.2G299500' => 'ppe', 'Prupe.5G076000' => 'ppe', 'Prupe.8G138800' => 'ppe', 'Psat3g016680' => 'psa', 'Psat5g012360' => 'psa', 'Psat5g045320' => 'psa', 'Psat7g034480' => 'psa', 'PSO173G0115' => 'pso', 'PSO357G0154' => 'pso', 'PSO384G2916' => 'pso', 'PSO541G3847' => 'pso', 'PSO675G7606' => 'pso', 'QL09p013112' => 'qlo', 'QL10p022575' => 'qlo', 'QL11p011484' => 'qlo', 'RcHm_v2.0_Chr1g0313171' => 'rch', 'RcHm_v2.0_Chr2g0137801' => 'rch', 'RcHm_v2.0_Chr2g0166461' => 'rch', 'RcHm_v2.0_Chr4g0427891' => 'rch', 'RcHm_v2.0_Chr5g0012941' => 'rch', 'RcHm_v2.0_Chr5g0012951' => 'rch', 'RcHm_v2.0_Chr5g0080771' => 'rch', 'RcHm_v2.0_Chr6g0261561' => 'rch', 'RcHm_v2.0_Chr6g0287271' => 'rch', 'RcHm_v2.0_Chr7g0202211' => 'rch', 'Rhsim01G0000400' => 'rsi', 'Rhsim02G0055200' => 'rsi', 'Rhsim09G0200200' => 'rsi', 'Sabra04G0052400' => 'sbr', 'Sabra14G0082700' => 'sbr', 'Sabra17G0119400' => 'sbr', 'SalBow2G1075' => 'sbo', 'SalBow2G2133' => 'sbo', 'SalBow3G3029' => 'sbo', 'SalBow6G3314' => 'sbo', 'Sc09g0007270' => 'sci', 'Sc18g0006170' => 'sci', 'Sc25g0004870' => 'sci', 'Sed0015133' => 'sed', 'Sed0018120' => 'sed', 'Sed0023675' => 'sed', 'SEGI_03261' => 'sgi', 'SEGI_11320' => 'sgi', 'SGA_v2.0_scaffold10G05300' => 'sas', 'SGA_v2.0_scaffold147G36388' => 'sas', 'SGA_v2.0_scaffold22G09857' => 'sas', 'SGA_v2.0_scaffold25G10876' => 'sas', 'SGA_v2.0_scaffold262G45927' => 'sas', 'SGA_v2.0_scaffold87G27134' => 'sas', 'SMO114G0131' => 'smo', 'SMO367G0299' => 'smo', 'Solyc01g096870.4' => 'sly', 'Solyc03g117330.4' => 'sly', 'Solyc06g068320.3' => 'sly', 'Sopen01g040580' => 'spe', 'Sopen03g036220' => 'spe', 'Sopen06g025590' => 'spe', 'Sp5g01250' => 'spa', 'Sp6g14710' => 'spa', 'TAR365G0316' => 'tar', 'TAR633G0527' => 'tar', 'TAR636G1793' => 'tar', 'THA.LOC104811964' => 'tha', 'THA.LOC104817431' => 'tha', 'Thecc.01G325200' => 'tca', 'Thecc.02G038600' => 'tca', 'Thecc.02G185700' => 'tca', 'Thecc.03G182500' => 'tca', 'Thecc.04G208500' => 'tca', 'Thhalv10005900m.g' => 'esa', 'Thhalv10011470m.g' => 'esa', 'Thhalv10013193m.g' => 'esa', 'TPR.G2469' => 'tpr', 'TPR.G26044' => 'tpr', 'TWI14G0872' => 'twi', 'TWI14G1260' => 'twi', 'TWI32G0004' => 'twi', 'TWI39G0800' => 'twi', 'TWI59G1486' => 'twi', 'unitig_27.g25116' => 'ugi', 'unitig_60.g25549' => 'ugi', 'vmacro09819' => 'vma', 'vmacro18594' => 'vma', 'VMungo0464G0041' => 'vmu', 'VMungo0464G1027' => 'vmu', 'VMungo0985G0009' => 'vmu', 'VMungo1127G0793' => 'vmu', 'VMungo1383G1850' => 'vmu', 'Zm00001eb073240' => 'zma', 'Zm00001eb202580' => 'zma', 'Zm00001eb300750' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001410' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001410' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001410' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001410' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001410', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '445', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p11770' => 'bna', 'A04p12210' => 'bna', 'A07p25850' => 'bna', 'A09p01100' => 'bna', 'A09p01110' => 'bna', 'A09p54220' => 'bna', 'A10p10070' => 'bna', 'A10p10080' => 'bna', 'Aa31LG10G16100' => 'aar', 'Aa31LG3G8870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3302' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.618' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.856' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2217' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2760' => 'aag', 'Actinidia03133' => 'ach', 'Actinidia06405' => 'ach', 'Actinidia20863' => 'ach', 'Actinidia20965' => 'ach', 'Actinidia21340' => 'ach', 'Actinidia21341' => 'ach', 'Actinidia31834' => 'ach', 'Actinidia34148' => 'ach', 'Ah.02g126370' => 'amhyb', 'Ah.04g153520' => 'amhyb', 'Ah.16g106580' => 'amhyb', 'AL5G29550' => 'aly', 'AL5G44840' => 'aly', 'AL7G11820' => 'aly', 'AL8G26980' => 'aly', 'Aqoxy2G01498' => 'aox', 'Aqoxy5G01895' => 'aox', 'Aqoxy6G01697' => 'aox', 'Aqoxy6G01698' => 'aox', 'Aqoxy7G00253' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18GXDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2022SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA6YY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8GG75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KLDP20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYSL7K' => 'arhy', 'AT3G62120' => 'ath', 'AT5G10880' => 'ath', 'AT5G52520' => 'ath', 'ATR0661G435' => 'atr', 'ATR0730G099' => 'atr', 'Atru.chr1.370' => 'acertr', 'Atru.chr1.387' => 'acertr', 'Atru.chr1.3904' => 'acertr', 'Atru.chr4.407' => 'acertr', 'Atru.chr5.3423' => 'acertr', 'Atru.ctg97_1.1' => 'acertr', 'AUR62012943' => 'cqu', 'AUR62027143' => 'cqu', 'AUR62027146' => 'cqu', 'AUR62027147' => 'cqu', 'AUR62029493' => 'cqu', 'AUR62035357' => 'cqu', 'AUR62035889' => 'cqu', 'AUR62037623' => 'cqu', 'AUR62040861' => 'cqu', 'BcaB02g07355' => 'bca', 'BcaB02g07357' => 'bca', 'BcaB05g21963' => 'bca', 'BcaB05g23847' => 'bca', 'BcaB06g27310' => 'bca', 'BcaB06g27314' => 'bca', 'BcaB06g27315' => 'bca', 'BcaB06g27332' => 'bca', 'BcaB08g35606' => 'bca', 'BcaC02g10103' => 'bca', 'BcaC03g14524' => 'bca', 'BcaC04g20579' => 'bca', 'BcaC05g25569' => 'bca', 'BcaC07g40705' => 'bca', 'BcaC08g43334' => 'bca', 'BcaC08g45184' => 'bca', 'BcaC08g45185' => 'bca', 'BcaNung01443' => 'bca', 'BcaNung07179' => 'bca', 'BNapus_Darmor_BZH_scaffold_232p00120' => 'bna', 'BolC2t08096H' => 'bol', 'BolC4t24837H' => 'bol', 'BolC4t26172H' => 'bol', 'BolC4t26174H' => 'bol', 'BolC4t26175H' => 'bol', 'BolC6t37974H' => 'bol', 'BolC6t37975H' => 'bol', 'BolC7t45765H' => 'bol', 'BolC8t51286H' => 'bol', 'BolC9t55948H' => 'bol', 'BolC9t57078H' => 'bol', 'BraA02t06242Z' => 'bra', 'BraA04t16882Z' => 'bra', 'BraA07t30231Z' => 'bra', 'BraA07t30232Z' => 'bra', 'BraA09t37959Z' => 'bra', 'BraA09t40834Z' => 'bra', 'BraA10t43089Z' => 'bra', 'C02p19590' => 'bna', 'C04p45860' => 'bna', 'C04p45920' => 'bna', 'C06p06930' => 'bna', 'C06p28090' => 'bna', 'C07p00790' => 'bna', 'C07p52640' => 'bna', 'C08p37080' => 'bna', 'C09p41940' => 'bna', 'CAN.G1490.15' => 'can', 'CAN.G407.28' => 'can', 'CAN.G407.29' => 'can', 'CANSAT21G1393' => 'cansat', 'CANSAT54G2973' => 'cansat', 'CARHR172460' => 'chi', 'CARHR265490' => 'chi', 'Carub.0005s2008' => 'cru', 'Carub.0005s2887' => 'cru', 'Carub.0008s0152' => 'cru', 'Carub.0008s1264' => 'cru', 'Ca_09246_v3' => 'car', 'Ca_15468_v3' => 'car', 'Ca_15983_v3' => 'car', 'CBR_g8325' => 'cbr', 'CBR_g8856' => 'cbr', 'Cc00_g01070' => 'ccan', 'Cc00_g34340' => 'ccan', 'Cc02_g02500' => 'ccan', 'Cc02_g18490' => 'ccan', 'Cc05_g00870' => 'ccan', 'Cc05_g07020' => 'ccan', 'Cc05_g08880' => 'ccan', 'Cc07_g14460' => 'ccan', 'Cc11_g01030' => 'ccan', 'CDE06G1090' => 'cde', 'CDE08G1059' => 'cde', 'CDE11G0932' => 'cde', 'Cfa004912' => 'cfa', 'Cfa016279' => 'cfa', 'Cfa023476' => 'cfa', 'Ciclev10004659m.g' => 'ccl', 'Ciclev10019765m.g' => 'ccl', 'Ciclev10031253m.g' => 'ccl', 'CiPaw.05G263200' => 'cil', 'CiPaw.07G125500' => 'cil', 'CiPaw.08G082700' => 'cil', 'CiPaw.13G167600' => 'cil', 'ClCG01G007170' => 'cla', 'ClCG05G008280' => 'cla', 'ClCG05G008300' => 'cla', 'ClCG07G015700' => 'cla', 'COL.COLO4_23130' => 'col', 'COL.COLO4_36928' => 'col', 'Cpa.g.sc107.92' => 'cpa', 'Cpa.g.sc107.96' => 'cpa', 'Cpa.g.sc285.2' => 'cpa', 'Cre07.g351300' => 'cre', 'Cre09.g406200' => 'cre', 'Cre10.g429100' => 'cre', 'Cre12.g549850' => 'cre', 'CsaV3_3G018830' => 'csa', 'CsaV3_4G003400' => 'csa', 'CsaV3_5G018610' => 'csa', 'CSS0001759' => 'camsi', 'CSS0006615' => 'camsi', 'CSS0009156' => 'camsi', 'CSS0016541' => 'camsi', 'CSS0017075' => 'camsi', 'CSS0043276' => 'camsi', 'CSS0049825' => 'camsi', 'DCAR_002557' => 'dca', 'DCAR_009384' => 'dca', 'DCAR_014517' => 'dca', 'Dinv12081' => 'din', 'Dinv28396' => 'din', 'Dinv29495' => 'din', 'Dinv33171' => 'din', 'Dinv35240' => 'din', 'Duzib068G1356' => 'dzi', 'Duzib084G0352' => 'dzi', 'Duzib133G0171' => 'dzi', 'Duzib205G1919' => 'dzi', 'Duzib268G0962' => 'dzi', 'Duzib268G1140' => 'dzi', 'Duzib268G1550' => 'dzi', 'ECA236G4070' => 'eca', 'ECA238G2766' => 'eca', 'ECA248G2670' => 'eca', 'EL10Ac2g03345' => 'bvu', 'EL10Ac2g03885' => 'bvu', 'EL10Ac3g06719' => 'bvu', 'Eucgr.A02753' => 'egr', 'Eucgr.J00690' => 'egr', 'Eucgr.K00563' => 'egr', 'FAN02G1769' => 'fan', 'FAN04G1960' => 'fan', 'FAN05G0319' => 'fan', 'FAN05G3683' => 'fan', 'FAN05G4243' => 'fan', 'FAN05G5483' => 'fan', 'FAN07G2033' => 'fan', 'FAN08G3530' => 'fan', 'FAN09G0530' => 'fan', 'FAN09G0656' => 'fan', 'FAN09G2421' => 'fan', 'FAN12G1773' => 'fan', 'FAN13G2235' => 'fan', 'FAN14G4573' => 'fan', 'FAN14G4931' => 'fan', 'FAN17G1356' => 'fan', 'FAN24G2739' => 'fan', 'FvH4_2g20861' => 'fve', 'FvH4_2g20862' => 'fve', 'FvH4_4g21680' => 'fve', 'FvH4_5g00340' => 'fve', 'FvH4_6g31250' => 'fve', 'FvH4_6g47400' => 'fve', 'Glyma.03G224500' => 'gma', 'Glyma.09G133200' => 'gma', 'Glyma.14G153800' => 'gma', 'Glyma.16G179800' => 'gma', 'Glyma.19G221400' => 'gma', 'Gohir.A06G209000' => 'ghi', 'Gohir.A12G120000' => 'ghi', 'Gohir.A12G255700' => 'ghi', 'Gohir.D02G104232' => 'ghi', 'Gohir.D04G113650' => 'ghi', 'Gohir.D05G353500' => 'ghi', 'Gohir.D06G146050' => 'ghi', 'Gohir.D06G151800' => 'ghi', 'Gohir.D06G212000' => 'ghi', 'Gohir.D07G127900' => 'ghi', 'Gohir.D12G086500' => 'ghi', 'Gohir.D12G123600' => 'ghi', 'Gohir.D12G140050' => 'ghi', 'Gohir.D12G257100' => 'ghi', 'Gohir.D13G173600' => 'ghi', 'Gorai.001G106400' => 'gra', 'Gorai.005G118300' => 'gra', 'Gorai.006G182200' => 'gra', 'Gorai.008G134700' => 'gra', 'Gorai.008G151500' => 'gra', 'Gorai.008G275300' => 'gra', 'Gorai.009G386000' => 'gra', 'Gorai.010G177100' => 'gra', 'Gorai.010G177200' => 'gra', 'Gorai.010G254000' => 'gra', 'GSVIVG01028250001' => 'vvi', 'GSVIVG01028877001' => 'vvi', 'HanXRQChr04g0120461' => 'han', 'HanXRQChr07g0206941' => 'han', 'HanXRQChr15g0480911' => 'han', 'Haze_00033' => 'cav', 'Haze_05147' => 'cav', 'Haze_26683' => 'cav', 'Hma1.2p1_0227F.1_g096120' => 'hma', 'Hma1.2p1_0227F.1_g096130' => 'hma', 'Hma1.2p1_0327F.1_g126300' => 'hma', 'Hma1.2p1_0327F.1_g126310' => 'hma', 'Hma1.2p1_0484F.1_g162960' => 'hma', 'Hma1.2p1_0484F.1_g162965' => 'hma', 'Hma1.2p1_0636F.1_g193340' => 'hma', 'HPP92_001179' => 'vpl', 'HPP92_001947' => 'vpl', 'HPP92_015650' => 'vpl', 'HPP92_015654' => 'vpl', 'HPP92_028053' => 'vpl', 'Hund12464' => 'sun', 'Hund19272' => 'sun', 'Lalb_Chr02g0141201' => 'lal', 'Lalb_Chr02g0141421' => 'lal', 'Lalb_Chr15g0077891' => 'lal', 'Lj1C1004T3' => 'lonja', 'Lj1g0011311' => 'lja', 'Lj2g0010468' => 'lja', 'Lj2g0023395' => 'lja', 'Lj3C841G7' => 'lonja', 'Lj6A703T91' => 'lonja', 'Lj6g0016572' => 'lja', 'Lsat_1_v5_gn_2_131140' => 'lsa', 'Lsat_1_v5_gn_8_103640' => 'lsa', 'Lsat_1_v5_gn_9_93401' => 'lsa', 'Manes.01G235100' => 'mes', 'Manes.14G023300' => 'mes', 'Mapoly0025s0131' => 'mpo', 'Mapoly0051s0001' => 'mpo', 'MBI04_g21147_MAGBIO' => 'mbi', 'MBI04_g21149_MAGBIO' => 'mbi', 'MBI04_g21150_MAGBIO' => 'mbi', 'MBI04_g30786_MAGBIO' => 'mbi', 'MBI14_g06389_MAGBIO' => 'mbi', 'MBI18_g10371_MAGBIO' => 'mbi', 'MCO06G048' => 'mco', 'MCO14G216' => 'mco', 'MD01G1206900' => 'mdo', 'MD07G1277600' => 'mdo', 'MD07G1277700' => 'mdo', 'MD13G1156800' => 'mdo', 'MD16G1134100' => 'mdo', 'Medtr3g048190' => 'mtr', 'Medtr3g100910' => 'mtr', 'Medtr3g114550' => 'mtr', 'Medtr3g114570' => 'mtr', 'Medtr7g110660' => 'mtr', 'MELO3C005193.2' => 'cme', 'MELO3C017711.2' => 'cme', 'MELO3C019492.2' => 'cme', 'MELO3C029008.2' => 'cme', 'Migut.D02441' => 'egut', 'Migut.F01092' => 'egut', 'Migut.N02489' => 'egut', 'MSTRG.18762' => 'ama', 'MSTRG.21039' => 'ama', 'Nitab4.5_0000172g1620' => 'nta', 'Nitab4.5_0000232g0190' => 'nta', 'Nitab4.5_0000373g0210' => 'nta', 'Nitab4.5_0001611g0080' => 'nta', 'Nitab4.5_0002322g0120' => 'nta', 'Nitab4.5_0002322g0150' => 'nta', 'Nitab4.5_0004217g0010' => 'nta', 'Nitab4.5_0005056g0110' => 'nta', 'Nitab4.5_0006185g0010' => 'nta', 'Nitab4.5_0006185g0030' => 'nta', 'Nitab4.5_0011429g0010' => 'nta', 'Nn1g01600' => 'nnu', 'Nn1g09397' => 'nnu', 'Nn7g37405' => 'nnu', 'Oeu007521.3' => 'oeu', 'Oeu033106.1' => 'oeu', 'Oeu038081.1' => 'oeu', 'Oeu045369.1' => 'oeu', 'Os07g0165000' => 'osa', 'Os12g0443700' => 'osa', 'Peaxi162Scf00045g00024' => 'pax', 'Peaxi162Scf00207g00533' => 'pax', 'Peaxi162Scf00647g00325' => 'pax', 'PGR042G0190' => 'pgr', 'PGR142G3315' => 'pgr', 'PGSC0003DMG400014136' => 'stu', 'PGSC0003DMG400027526' => 'stu', 'PGSC0003DMG400028502' => 'stu', 'Phvul.001G218300' => 'pvu', 'Phvul.004G109800' => 'pvu', 'Potri.002G187000' => 'ptr', 'Potri.004G078866' => 'ptr', 'Potri.004G078932' => 'ptr', 'Potri.014G112400' => 'ptr', 'Potri.017G142500' => 'ptr', 'Pp3c21_580' => 'ppa', 'Pp3c2_3850' => 'ppa', 'PRCOL_00004237' => 'pco', 'PRCOL_00007039' => 'pco', 'Prupe.1G103500' => 'ppe', 'Prupe.2G299500' => 'ppe', 'Prupe.5G076000' => 'ppe', 'Prupe.8G138800' => 'ppe', 'Psat3g016680' => 'psa', 'Psat5g012360' => 'psa', 'Psat5g045320' => 'psa', 'Psat7g034480' => 'psa', 'PSO173G0115' => 'pso', 'PSO357G0154' => 'pso', 'PSO384G2916' => 'pso', 'PSO541G3847' => 'pso', 'PSO675G7606' => 'pso', 'QL09p013112' => 'qlo', 'QL10p022575' => 'qlo', 'QL11p011484' => 'qlo', 'RcHm_v2.0_Chr1g0313171' => 'rch', 'RcHm_v2.0_Chr2g0137801' => 'rch', 'RcHm_v2.0_Chr2g0166461' => 'rch', 'RcHm_v2.0_Chr4g0427891' => 'rch', 'RcHm_v2.0_Chr5g0012941' => 'rch', 'RcHm_v2.0_Chr5g0012951' => 'rch', 'RcHm_v2.0_Chr5g0080771' => 'rch', 'RcHm_v2.0_Chr6g0261561' => 'rch', 'RcHm_v2.0_Chr6g0287271' => 'rch', 'RcHm_v2.0_Chr7g0202211' => 'rch', 'Rhsim01G0000400' => 'rsi', 'Rhsim02G0055200' => 'rsi', 'Rhsim09G0200200' => 'rsi', 'Sabra04G0052400' => 'sbr', 'Sabra14G0082700' => 'sbr', 'Sabra17G0119400' => 'sbr', 'SalBow2G1075' => 'sbo', 'SalBow2G2133' => 'sbo', 'SalBow3G3029' => 'sbo', 'SalBow6G3314' => 'sbo', 'Sc09g0007270' => 'sci', 'Sc18g0006170' => 'sci', 'Sc25g0004870' => 'sci', 'Sed0015133' => 'sed', 'Sed0018120' => 'sed', 'Sed0023675' => 'sed', 'SEGI_03261' => 'sgi', 'SEGI_11320' => 'sgi', 'SGA_v2.0_scaffold10G05300' => 'sas', 'SGA_v2.0_scaffold147G36388' => 'sas', 'SGA_v2.0_scaffold22G09857' => 'sas', 'SGA_v2.0_scaffold25G10876' => 'sas', 'SGA_v2.0_scaffold262G45927' => 'sas', 'SGA_v2.0_scaffold87G27134' => 'sas', 'SMO114G0131' => 'smo', 'SMO367G0299' => 'smo', 'Solyc01g096870.4' => 'sly', 'Solyc03g117330.4' => 'sly', 'Solyc06g068320.3' => 'sly', 'Sopen01g040580' => 'spe', 'Sopen03g036220' => 'spe', 'Sopen06g025590' => 'spe', 'Sp5g01250' => 'spa', 'Sp6g14710' => 'spa', 'TAR365G0316' => 'tar', 'TAR633G0527' => 'tar', 'TAR636G1793' => 'tar', 'THA.LOC104811964' => 'tha', 'THA.LOC104817431' => 'tha', 'Thecc.01G325200' => 'tca', 'Thecc.02G038600' => 'tca', 'Thecc.02G185700' => 'tca', 'Thecc.03G182500' => 'tca', 'Thecc.04G208500' => 'tca', 'Thhalv10005900m.g' => 'esa', 'Thhalv10011470m.g' => 'esa', 'Thhalv10013193m.g' => 'esa', 'TPR.G2469' => 'tpr', 'TPR.G26044' => 'tpr', 'TWI14G0872' => 'twi', 'TWI14G1260' => 'twi', 'TWI32G0004' => 'twi', 'TWI39G0800' => 'twi', 'TWI59G1486' => 'twi', 'unitig_27.g25116' => 'ugi', 'unitig_60.g25549' => 'ugi', 'vmacro09819' => 'vma', 'vmacro18594' => 'vma', 'VMungo0464G0041' => 'vmu', 'VMungo0464G1027' => 'vmu', 'VMungo0985G0009' => 'vmu', 'VMungo1127G0793' => 'vmu', 'VMungo1383G1850' => 'vmu', 'Zm00001eb073240' => 'zma', 'Zm00001eb202580' => 'zma', 'Zm00001eb300750' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001410', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001410' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001410', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '445', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001410' ) ), 'genes' => array( 'A02p11770' => 'bna', 'A04p12210' => 'bna', 'A07p25850' => 'bna', 'A09p01100' => 'bna', 'A09p01110' => 'bna', 'A09p54220' => 'bna', 'A10p10070' => 'bna', 'A10p10080' => 'bna', 'Aa31LG10G16100' => 'aar', 'Aa31LG3G8870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3302' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.618' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.856' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2217' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2512' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2760' => 'aag', 'Actinidia03133' => 'ach', 'Actinidia06405' => 'ach', 'Actinidia20863' => 'ach', 'Actinidia20965' => 'ach', 'Actinidia21340' => 'ach', 'Actinidia21341' => 'ach', 'Actinidia31834' => 'ach', 'Actinidia34148' => 'ach', 'Ah.02g126370' => 'amhyb', 'Ah.04g153520' => 'amhyb', 'Ah.16g106580' => 'amhyb', 'AL5G29550' => 'aly', 'AL5G44840' => 'aly', 'AL7G11820' => 'aly', 'AL8G26980' => 'aly', 'Aqoxy2G01498' => 'aox', 'Aqoxy5G01895' => 'aox', 'Aqoxy6G01697' => 'aox', 'Aqoxy6G01698' => 'aox', 'Aqoxy7G00253' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18GXDP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2022SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA6YY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8GG75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KLDP20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYSL7K' => 'arhy', 'AT3G62120' => 'ath', 'AT5G10880' => 'ath', 'AT5G52520' => 'ath', 'ATR0661G435' => 'atr', 'ATR0730G099' => 'atr', 'Atru.chr1.370' => 'acertr', 'Atru.chr1.387' => 'acertr', 'Atru.chr1.3904' => 'acertr', 'Atru.chr4.407' => 'acertr', 'Atru.chr5.3423' => 'acertr', 'Atru.ctg97_1.1' => 'acertr', 'AUR62012943' => 'cqu', 'AUR62027143' => 'cqu', 'AUR62027146' => 'cqu', 'AUR62027147' => 'cqu', 'AUR62029493' => 'cqu', 'AUR62035357' => 'cqu', 'AUR62035889' => 'cqu', 'AUR62037623' => 'cqu', 'AUR62040861' => 'cqu', 'BcaB02g07355' => 'bca', 'BcaB02g07357' => 'bca', 'BcaB05g21963' => 'bca', 'BcaB05g23847' => 'bca', 'BcaB06g27310' => 'bca', 'BcaB06g27314' => 'bca', 'BcaB06g27315' => 'bca', 'BcaB06g27332' => 'bca', 'BcaB08g35606' => 'bca', 'BcaC02g10103' => 'bca', 'BcaC03g14524' => 'bca', 'BcaC04g20579' => 'bca', 'BcaC05g25569' => 'bca', 'BcaC07g40705' => 'bca', 'BcaC08g43334' => 'bca', 'BcaC08g45184' => 'bca', 'BcaC08g45185' => 'bca', 'BcaNung01443' => 'bca', 'BcaNung07179' => 'bca', 'BNapus_Darmor_BZH_scaffold_232p00120' => 'bna', 'BolC2t08096H' => 'bol', 'BolC4t24837H' => 'bol', 'BolC4t26172H' => 'bol', 'BolC4t26174H' => 'bol', 'BolC4t26175H' => 'bol', 'BolC6t37974H' => 'bol', 'BolC6t37975H' => 'bol', 'BolC7t45765H' => 'bol', 'BolC8t51286H' => 'bol', 'BolC9t55948H' => 'bol', 'BolC9t57078H' => 'bol', 'BraA02t06242Z' => 'bra', 'BraA04t16882Z' => 'bra', 'BraA07t30231Z' => 'bra', 'BraA07t30232Z' => 'bra', 'BraA09t37959Z' => 'bra', 'BraA09t40834Z' => 'bra', 'BraA10t43089Z' => 'bra', 'C02p19590' => 'bna', 'C04p45860' => 'bna', 'C04p45920' => 'bna', 'C06p06930' => 'bna', 'C06p28090' => 'bna', 'C07p00790' => 'bna', 'C07p52640' => 'bna', 'C08p37080' => 'bna', 'C09p41940' => 'bna', 'CAN.G1490.15' => 'can', 'CAN.G407.28' => 'can', 'CAN.G407.29' => 'can', 'CANSAT21G1393' => 'cansat', 'CANSAT54G2973' => 'cansat', 'CARHR172460' => 'chi', 'CARHR265490' => 'chi', 'Carub.0005s2008' => 'cru', 'Carub.0005s2887' => 'cru', 'Carub.0008s0152' => 'cru', 'Carub.0008s1264' => 'cru', 'Ca_09246_v3' => 'car', 'Ca_15468_v3' => 'car', 'Ca_15983_v3' => 'car', 'CBR_g8325' => 'cbr', 'CBR_g8856' => 'cbr', 'Cc00_g01070' => 'ccan', 'Cc00_g34340' => 'ccan', 'Cc02_g02500' => 'ccan', 'Cc02_g18490' => 'ccan', 'Cc05_g00870' => 'ccan', 'Cc05_g07020' => 'ccan', 'Cc05_g08880' => 'ccan', 'Cc07_g14460' => 'ccan', 'Cc11_g01030' => 'ccan', 'CDE06G1090' => 'cde', 'CDE08G1059' => 'cde', 'CDE11G0932' => 'cde', 'Cfa004912' => 'cfa', 'Cfa016279' => 'cfa', 'Cfa023476' => 'cfa', 'Ciclev10004659m.g' => 'ccl', 'Ciclev10019765m.g' => 'ccl', 'Ciclev10031253m.g' => 'ccl', 'CiPaw.05G263200' => 'cil', 'CiPaw.07G125500' => 'cil', 'CiPaw.08G082700' => 'cil', 'CiPaw.13G167600' => 'cil', 'ClCG01G007170' => 'cla', 'ClCG05G008280' => 'cla', 'ClCG05G008300' => 'cla', 'ClCG07G015700' => 'cla', 'COL.COLO4_23130' => 'col', 'COL.COLO4_36928' => 'col', 'Cpa.g.sc107.92' => 'cpa', 'Cpa.g.sc107.96' => 'cpa', 'Cpa.g.sc285.2' => 'cpa', 'Cre07.g351300' => 'cre', 'Cre09.g406200' => 'cre', 'Cre10.g429100' => 'cre', 'Cre12.g549850' => 'cre', 'CsaV3_3G018830' => 'csa', 'CsaV3_4G003400' => 'csa', 'CsaV3_5G018610' => 'csa', 'CSS0001759' => 'camsi', 'CSS0006615' => 'camsi', 'CSS0009156' => 'camsi', 'CSS0016541' => 'camsi', 'CSS0017075' => 'camsi', 'CSS0043276' => 'camsi', 'CSS0049825' => 'camsi', 'DCAR_002557' => 'dca', 'DCAR_009384' => 'dca', 'DCAR_014517' => 'dca', 'Dinv12081' => 'din', 'Dinv28396' => 'din', 'Dinv29495' => 'din', 'Dinv33171' => 'din', 'Dinv35240' => 'din', 'Duzib068G1356' => 'dzi', 'Duzib084G0352' => 'dzi', 'Duzib133G0171' => 'dzi', 'Duzib205G1919' => 'dzi', 'Duzib268G0962' => 'dzi', 'Duzib268G1140' => 'dzi', 'Duzib268G1550' => 'dzi', 'ECA236G4070' => 'eca', 'ECA238G2766' => 'eca', 'ECA248G2670' => 'eca', 'EL10Ac2g03345' => 'bvu', 'EL10Ac2g03885' => 'bvu', 'EL10Ac3g06719' => 'bvu', 'Eucgr.A02753' => 'egr', 'Eucgr.J00690' => 'egr', 'Eucgr.K00563' => 'egr', 'FAN02G1769' => 'fan', 'FAN04G1960' => 'fan', 'FAN05G0319' => 'fan', 'FAN05G3683' => 'fan', 'FAN05G4243' => 'fan', 'FAN05G5483' => 'fan', 'FAN07G2033' => 'fan', 'FAN08G3530' => 'fan', 'FAN09G0530' => 'fan', 'FAN09G0656' => 'fan', 'FAN09G2421' => 'fan', 'FAN12G1773' => 'fan', 'FAN13G2235' => 'fan', 'FAN14G4573' => 'fan', 'FAN14G4931' => 'fan', 'FAN17G1356' => 'fan', 'FAN24G2739' => 'fan', 'FvH4_2g20861' => 'fve', 'FvH4_2g20862' => 'fve', 'FvH4_4g21680' => 'fve', 'FvH4_5g00340' => 'fve', 'FvH4_6g31250' => 'fve', 'FvH4_6g47400' => 'fve', 'Glyma.03G224500' => 'gma', 'Glyma.09G133200' => 'gma', 'Glyma.14G153800' => 'gma', 'Glyma.16G179800' => 'gma', 'Glyma.19G221400' => 'gma', 'Gohir.A06G209000' => 'ghi', 'Gohir.A12G120000' => 'ghi', 'Gohir.A12G255700' => 'ghi', 'Gohir.D02G104232' => 'ghi', 'Gohir.D04G113650' => 'ghi', 'Gohir.D05G353500' => 'ghi', 'Gohir.D06G146050' => 'ghi', 'Gohir.D06G151800' => 'ghi', 'Gohir.D06G212000' => 'ghi', 'Gohir.D07G127900' => 'ghi', 'Gohir.D12G086500' => 'ghi', 'Gohir.D12G123600' => 'ghi', 'Gohir.D12G140050' => 'ghi', 'Gohir.D12G257100' => 'ghi', 'Gohir.D13G173600' => 'ghi', 'Gorai.001G106400' => 'gra', 'Gorai.005G118300' => 'gra', 'Gorai.006G182200' => 'gra', 'Gorai.008G134700' => 'gra', 'Gorai.008G151500' => 'gra', 'Gorai.008G275300' => 'gra', 'Gorai.009G386000' => 'gra', 'Gorai.010G177100' => 'gra', 'Gorai.010G177200' => 'gra', 'Gorai.010G254000' => 'gra', 'GSVIVG01028250001' => 'vvi', 'GSVIVG01028877001' => 'vvi', 'HanXRQChr04g0120461' => 'han', 'HanXRQChr07g0206941' => 'han', 'HanXRQChr15g0480911' => 'han', 'Haze_00033' => 'cav', 'Haze_05147' => 'cav', 'Haze_26683' => 'cav', 'Hma1.2p1_0227F.1_g096120' => 'hma', 'Hma1.2p1_0227F.1_g096130' => 'hma', 'Hma1.2p1_0327F.1_g126300' => 'hma', 'Hma1.2p1_0327F.1_g126310' => 'hma', 'Hma1.2p1_0484F.1_g162960' => 'hma', 'Hma1.2p1_0484F.1_g162965' => 'hma', 'Hma1.2p1_0636F.1_g193340' => 'hma', 'HPP92_001179' => 'vpl', 'HPP92_001947' => 'vpl', 'HPP92_015650' => 'vpl', 'HPP92_015654' => 'vpl', 'HPP92_028053' => 'vpl', 'Hund12464' => 'sun', 'Hund19272' => 'sun', 'Lalb_Chr02g0141201' => 'lal', 'Lalb_Chr02g0141421' => 'lal', 'Lalb_Chr15g0077891' => 'lal', 'Lj1C1004T3' => 'lonja', 'Lj1g0011311' => 'lja', 'Lj2g0010468' => 'lja', 'Lj2g0023395' => 'lja', 'Lj3C841G7' => 'lonja', 'Lj6A703T91' => 'lonja', 'Lj6g0016572' => 'lja', 'Lsat_1_v5_gn_2_131140' => 'lsa', 'Lsat_1_v5_gn_8_103640' => 'lsa', 'Lsat_1_v5_gn_9_93401' => 'lsa', 'Manes.01G235100' => 'mes', 'Manes.14G023300' => 'mes', 'Mapoly0025s0131' => 'mpo', 'Mapoly0051s0001' => 'mpo', 'MBI04_g21147_MAGBIO' => 'mbi', 'MBI04_g21149_MAGBIO' => 'mbi', 'MBI04_g21150_MAGBIO' => 'mbi', 'MBI04_g30786_MAGBIO' => 'mbi', 'MBI14_g06389_MAGBIO' => 'mbi', 'MBI18_g10371_MAGBIO' => 'mbi', 'MCO06G048' => 'mco', 'MCO14G216' => 'mco', 'MD01G1206900' => 'mdo', 'MD07G1277600' => 'mdo', 'MD07G1277700' => 'mdo', 'MD13G1156800' => 'mdo', 'MD16G1134100' => 'mdo', 'Medtr3g048190' => 'mtr', 'Medtr3g100910' => 'mtr', 'Medtr3g114550' => 'mtr', 'Medtr3g114570' => 'mtr', 'Medtr7g110660' => 'mtr', 'MELO3C005193.2' => 'cme', 'MELO3C017711.2' => 'cme', 'MELO3C019492.2' => 'cme', 'MELO3C029008.2' => 'cme', 'Migut.D02441' => 'egut', 'Migut.F01092' => 'egut', 'Migut.N02489' => 'egut', 'MSTRG.18762' => 'ama', 'MSTRG.21039' => 'ama', 'Nitab4.5_0000172g1620' => 'nta', 'Nitab4.5_0000232g0190' => 'nta', 'Nitab4.5_0000373g0210' => 'nta', 'Nitab4.5_0001611g0080' => 'nta', 'Nitab4.5_0002322g0120' => 'nta', 'Nitab4.5_0002322g0150' => 'nta', 'Nitab4.5_0004217g0010' => 'nta', 'Nitab4.5_0005056g0110' => 'nta', 'Nitab4.5_0006185g0010' => 'nta', 'Nitab4.5_0006185g0030' => 'nta', 'Nitab4.5_0011429g0010' => 'nta', 'Nn1g01600' => 'nnu', 'Nn1g09397' => 'nnu', 'Nn7g37405' => 'nnu', 'Oeu007521.3' => 'oeu', 'Oeu033106.1' => 'oeu', 'Oeu038081.1' => 'oeu', 'Oeu045369.1' => 'oeu', 'Os07g0165000' => 'osa', 'Os12g0443700' => 'osa', 'Peaxi162Scf00045g00024' => 'pax', 'Peaxi162Scf00207g00533' => 'pax', 'Peaxi162Scf00647g00325' => 'pax', 'PGR042G0190' => 'pgr', 'PGR142G3315' => 'pgr', 'PGSC0003DMG400014136' => 'stu', 'PGSC0003DMG400027526' => 'stu', 'PGSC0003DMG400028502' => 'stu', 'Phvul.001G218300' => 'pvu', 'Phvul.004G109800' => 'pvu', 'Potri.002G187000' => 'ptr', 'Potri.004G078866' => 'ptr', 'Potri.004G078932' => 'ptr', 'Potri.014G112400' => 'ptr', 'Potri.017G142500' => 'ptr', 'Pp3c21_580' => 'ppa', 'Pp3c2_3850' => 'ppa', 'PRCOL_00004237' => 'pco', 'PRCOL_00007039' => 'pco', 'Prupe.1G103500' => 'ppe', 'Prupe.2G299500' => 'ppe', 'Prupe.5G076000' => 'ppe', 'Prupe.8G138800' => 'ppe', 'Psat3g016680' => 'psa', 'Psat5g012360' => 'psa', 'Psat5g045320' => 'psa', 'Psat7g034480' => 'psa', 'PSO173G0115' => 'pso', 'PSO357G0154' => 'pso', 'PSO384G2916' => 'pso', 'PSO541G3847' => 'pso', 'PSO675G7606' => 'pso', 'QL09p013112' => 'qlo', 'QL10p022575' => 'qlo', 'QL11p011484' => 'qlo', 'RcHm_v2.0_Chr1g0313171' => 'rch', 'RcHm_v2.0_Chr2g0137801' => 'rch', 'RcHm_v2.0_Chr2g0166461' => 'rch', 'RcHm_v2.0_Chr4g0427891' => 'rch', 'RcHm_v2.0_Chr5g0012941' => 'rch', 'RcHm_v2.0_Chr5g0012951' => 'rch', 'RcHm_v2.0_Chr5g0080771' => 'rch', 'RcHm_v2.0_Chr6g0261561' => 'rch', 'RcHm_v2.0_Chr6g0287271' => 'rch', 'RcHm_v2.0_Chr7g0202211' => 'rch', 'Rhsim01G0000400' => 'rsi', 'Rhsim02G0055200' => 'rsi', 'Rhsim09G0200200' => 'rsi', 'Sabra04G0052400' => 'sbr', 'Sabra14G0082700' => 'sbr', 'Sabra17G0119400' => 'sbr', 'SalBow2G1075' => 'sbo', 'SalBow2G2133' => 'sbo', 'SalBow3G3029' => 'sbo', 'SalBow6G3314' => 'sbo', 'Sc09g0007270' => 'sci', 'Sc18g0006170' => 'sci', 'Sc25g0004870' => 'sci', 'Sed0015133' => 'sed', 'Sed0018120' => 'sed', 'Sed0023675' => 'sed', 'SEGI_03261' => 'sgi', 'SEGI_11320' => 'sgi', 'SGA_v2.0_scaffold10G05300' => 'sas', 'SGA_v2.0_scaffold147G36388' => 'sas', 'SGA_v2.0_scaffold22G09857' => 'sas', 'SGA_v2.0_scaffold25G10876' => 'sas', 'SGA_v2.0_scaffold262G45927' => 'sas', 'SGA_v2.0_scaffold87G27134' => 'sas', 'SMO114G0131' => 'smo', 'SMO367G0299' => 'smo', 'Solyc01g096870.4' => 'sly', 'Solyc03g117330.4' => 'sly', 'Solyc06g068320.3' => 'sly', 'Sopen01g040580' => 'spe', 'Sopen03g036220' => 'spe', 'Sopen06g025590' => 'spe', 'Sp5g01250' => 'spa', 'Sp6g14710' => 'spa', 'TAR365G0316' => 'tar', 'TAR633G0527' => 'tar', 'TAR636G1793' => 'tar', 'THA.LOC104811964' => 'tha', 'THA.LOC104817431' => 'tha', 'Thecc.01G325200' => 'tca', 'Thecc.02G038600' => 'tca', 'Thecc.02G185700' => 'tca', 'Thecc.03G182500' => 'tca', 'Thecc.04G208500' => 'tca', 'Thhalv10005900m.g' => 'esa', 'Thhalv10011470m.g' => 'esa', 'Thhalv10013193m.g' => 'esa', 'TPR.G2469' => 'tpr', 'TPR.G26044' => 'tpr', 'TWI14G0872' => 'twi', 'TWI14G1260' => 'twi', 'TWI32G0004' => 'twi', 'TWI39G0800' => 'twi', 'TWI59G1486' => 'twi', 'unitig_27.g25116' => 'ugi', 'unitig_60.g25549' => 'ugi', 'vmacro09819' => 'vma', 'vmacro18594' => 'vma', 'VMungo0464G0041' => 'vmu', 'VMungo0464G1027' => 'vmu', 'VMungo0985G0009' => 'vmu', 'VMungo1127G0793' => 'vmu', 'VMungo1383G1850' => 'vmu', 'Zm00001eb073240' => 'zma', 'Zm00001eb202580' => 'zma', 'Zm00001eb300750' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001410' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001410' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001410' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001410' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151