Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1053800 Malus domestica HOM05D004922 ORTHO05D005990 9.0e-30 132.9 65 100.0
Peaxi162Scf00047g01222 Petunia axillaris HOM05D004922 ORTHO05D005990 1.1e-22 109.4 57 91.2
MD10G1167200 Malus domestica HOM05D004922 ORTHO05D005990 4.0e-22 107.5 53 98.1
Ah.06g191400 Amaranthus hybridus HOM05D004922 ORTHO05D005990 9.0e-22 106.3 53 96.2
AagrBONN_evm.TU.Sc2ySwM_228.5635 Anthoceros agrestis HOM05D004922 ORTHO05D005990 9.0e-22 106.3 53 96.2
Glyma.08G082700 Glycine max HOM05D004922 ORTHO05D005990 9.0e-22 106.3 62 85.5
MD05G1178700 Malus domestica HOM05D004922 ORTHO05D005990 9.0e-22 106.3 53 96.2
Mapoly0016s0054 Marchantia polymorpha HOM05D004922 ORTHO05D005990 9.0e-22 106.3 53 96.2
Prupe.8G205100 Prunus persica HOM05D004922 ORTHO05D005990 9.0e-22 106.3 53 96.2
ECA236G1627 Erigeron canadensis HOM05D004922 ORTHO05D005990 2.0e-21 105.1 53 94.3
HanXRQChr04g0110651 Helianthus annuus HOM05D004922 ORTHO05D005990 2.0e-21 105.1 53 94.3
HanXRQChr10g0287281 Helianthus annuus HOM05D004922 ORTHO05D005990 2.0e-21 105.1 53 94.3
Lsat_1_v5_gn_8_90161 Lactuca sativa HOM05D004922 ORTHO05D005990 2.0e-21 105.1 53 94.3
Sabra09G0054700 Salix brachista HOM05D004922 ORTHO05D005990 2.0e-21 105.1 54 94.4
Nitab4.5_0002920g0030 Nicotiana tabacum HOM05D004922 ORTHO05D005990 2.6e-21 104.8 53 92.5
Nitab4.5_0003904g0020 Nicotiana tabacum HOM05D004922 ORTHO05D005990 2.6e-21 104.8 53 92.5
CiPaw.04G107000 Carya illinoinensis HOM05D004922 ORTHO05D005990 3.4e-21 104.4 53 96.2
DCAR_023130 Daucus carota HOM05D004922 ORTHO05D005990 3.4e-21 104.4 54 92.6
Aa31LG5G17580 Aethionema arabicum HOM05D004922 ORTHO05D005990 4.5e-21 104.0 54 92.6
Rhsim02G0053600 Rhododendron simsii HOM05D004922 ORTHO05D005990 4.5e-21 104.0 54 94.4
SMO118G0467 Selaginella moellendorffii HOM05D004922 ORTHO05D005990 4.5e-21 104.0 53 92.5
Atru.chr8.785 Acer truncatum HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Actinidia35950 Actinidia chinensis HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
arahy.Tifrunner.gnm1.ann1.AXK6HV Arachis hypogaea HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
arahy.Tifrunner.gnm1.ann1.N94L43 Arachis hypogaea HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
EL10Ac4g08876 Beta vulgaris HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
CSS0022478 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
CSS0038803 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
CANSAT01G0689 Cannabis sativa HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
CANSAT01G1757 Cannabis sativa HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
CAN.G500.78 Capsicum annuum HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
CiPaw.03G151500 Carya illinoinensis HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
CDE02G4734 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
AUR62033984 Chenopodium quinoa HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Ca_18278_v3 Cicer arietinum L. HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Cc01_g17260 Coffea canephora HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
COL.COLO4_37469 Corchorus olitorius HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Haze_24774 Corylus avellana HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
MELO3C018062.2 Cucumis melo HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
CsaV3_3G028790 Cucumis sativus L. HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Dinv04668 Davidia involucrata HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Duzib138G1451 Durio zibethinus HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Eucgr.H03678 Eucalyptus grandis HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
FvH4_1g24390 Fragaria vesca HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
FAN19G2048 Fragaria x ananassa HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
FAN23G2197 Fragaria x ananassa HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
FAN28G0422 Fragaria x ananassa HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Gohir.A07G155600 Gossypium hirsutum HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Gohir.A11G136000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Gohir.D07G162000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Gohir.D11G142400 Gossypium hirsutum HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Gorai.001G185300 Gossypium raimondii HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Gorai.007G152700 Gossypium raimondii HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Hma1.2p1_1061F.1_g253320 Hydrangea macrophylla HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 7.6e-21 103.2 53 94.3
Lj4g0004779 Lotus japonicus HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Manes.12G042100 Manihot esculenta HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Manes.13G044200 Manihot esculenta HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Medtr4g094600 Medicago truncatula HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Nn7g37520 Nelumbo nucifera HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Peaxi162Scf00122g00811 Petunia axillaris HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Phvul.001G007400 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Phvul.002G196500 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Psat7g092040 Pisum sativum HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Potri.001G277900 Populus trichocarpa HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Potri.009G072500 Populus trichocarpa HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
PGR044G2430 Punica granatum HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
QL09p007931 Quercus lobata HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
QL09p044611 Quercus lobata HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
RcHm_v2.0_Chr2g0121221 Rosa chinensis HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Sabra16G0171900 Salix brachista HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
SalBow3G3780 Salvia bowleyana HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Sed0006654 Sechium edule HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
SEGI_22867 Sequoiadendron giganteum HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Sc05g0002390 Simmondsia chinensis HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Solyc09g091500.3 Solanum lycopersicum HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Sopen09g034430 Solanum pennellii HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
PGSC0003DMG400029651 Solanum tuberosum HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
THA.LOC104818942 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
THA.LOC104827350 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Thecc.01G228800 Theobroma cacao HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
TPR.G4933 Trifolium pratense HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
TWI09G0408 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
TWI59G0402 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
TAR365G0710 Trochodendron aralioides HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
TAR636G3017 Trochodendron aralioides HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
HPP92_027867 Vanilla planifolia HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
GSVIVG01029076001 Vitis vinifera HOM05D004922 ORTHO05D005990 7.6e-21 103.2 53 94.3
Aqoxy1G00374 Aquilegia oxysepala HOM05D004922 ORTHO05D005990 1.0e-20 102.8 53 92.5
ClCG07G001790 Citrullus lanatus HOM05D004922 ORTHO05D005990 1.0e-20 102.8 53 92.5
FAN26G0321 Fragaria x ananassa HOM05D004922 ORTHO05D005990 1.0e-20 102.8 52 96.2
FAN26G0401 Fragaria x ananassa HOM05D004922 ORTHO05D005990 1.0e-20 102.8 52 96.2
PSO210G2196 Papaver somniferum HOM05D004922 ORTHO05D005990 1.0e-20 102.8 53 92.5
PSO591G0020 Papaver somniferum HOM05D004922 ORTHO05D005990 1.0e-20 102.8 53 92.5
PSO832G2289 Papaver somniferum HOM05D004922 ORTHO05D005990 1.0e-20 102.8 53 92.5
Sed0024440 Sechium edule HOM05D004922 ORTHO05D005990 1.0e-20 102.8 53 92.5
TPR.G1594 Trifolium pratense HOM05D004922 ORTHO05D005990 1.0e-20 102.8 53 92.5
Cpa.g.sc3.67 Carica papaya HOM05D004922 ORTHO05D005990 1.7e-20 102.1 52 94.2
Ciclev10022785m.g Citrus clementina HOM05D004922 ORTHO05D005990 1.7e-20 102.1 53 92.5
Dinv19219 Davidia involucrata HOM05D004922 ORTHO05D005990 1.7e-20 102.1 53 92.5
Duzib133G0821 Durio zibethinus HOM05D004922 ORTHO05D005990 1.7e-20 102.1 53 92.5
Lalb_Chr07g0188871 Lupinus albus HOM05D004922 ORTHO05D005990 1.7e-20 102.1 53 92.5
CSS0043203 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 2.2e-20 101.7 53 92.5
Glyma.05G127900 Glycine max HOM05D004922 ORTHO05D005990 2.2e-20 101.7 53 92.5
Pp3c1_36020 Physcomitrium patens HOM05D004922 ORTHO05D005990 2.2e-20 101.7 53 92.5
Migut.D00519 Erythranthe guttata HOM05D004922 ORTHO05D005990 3.8e-20 100.9 53 90.6
Migut.N00343 Erythranthe guttata HOM05D004922 ORTHO05D005990 3.8e-20 100.9 53 92.5
Lalb_Chr13g0291421 Lupinus albus HOM05D004922 ORTHO05D005990 8.4e-20 99.8 53 90.6
HPP92_006337 Vanilla planifolia HOM05D004922 ORTHO05D005990 8.4e-20 99.8 52 92.3
AL8G22040 Arabidopsis lyrata HOM05D004922 ORTHO05D005990 1.1e-19 99.4 53 88.7
AT5G48870 Arabidopsis thaliana HOM05D004922 ORTHO05D005990 1.1e-19 99.4 53 88.7
Carub.0008s0859 Capsella rubella HOM05D004922 ORTHO05D005990 1.1e-19 99.4 53 88.7
CARHR182850 Cardamine hirsuta HOM05D004922 ORTHO05D005990 1.1e-19 99.4 53 88.7
Thhalv10005202m.g Eutrema salsugineum HOM05D004922 ORTHO05D005990 1.1e-19 99.4 53 88.7
Sp2g19260 Schrenkiella parvula HOM05D004922 ORTHO05D005990 1.1e-19 99.4 53 88.7
Lalb_Chr11g0067741 Lupinus albus HOM05D004922 ORTHO05D005990 2.5e-19 98.2 53 86.8
Os05g0389300 Oryza sativa ssp. japonica HOM05D004922 ORTHO05D005990 2.5e-19 98.2 53 90.6
Zm00001eb287110 Zea mays HOM05D004922 ORTHO05D005990 2.5e-19 98.2 53 90.6
Zm00001eb350780 Zea mays HOM05D004922 ORTHO05D005990 2.5e-19 98.2 53 90.6
BcaB07g30046 Brassica carinata HOM05D004922 ORTHO05D005990 4.2e-19 97.4 53 86.8
BcaC03g17679 Brassica carinata HOM05D004922 ORTHO05D005990 4.2e-19 97.4 53 86.8
BcaC04g23758 Brassica carinata HOM05D004922 ORTHO05D005990 4.2e-19 97.4 53 86.8
A02p37760 Brassica napus HOM05D004922 ORTHO05D005990 4.2e-19 97.4 53 86.8
A09p04660 Brassica napus HOM05D004922 ORTHO05D005990 4.2e-19 97.4 53 86.8
C02p56860 Brassica napus HOM05D004922 ORTHO05D005990 4.2e-19 97.4 53 86.8
C09p04970 Brassica napus HOM05D004922 ORTHO05D005990 4.2e-19 97.4 53 86.8
BolC2t11755H Brassica oleracea HOM05D004922 ORTHO05D005990 4.2e-19 97.4 53 86.8
BolC9t53426H Brassica oleracea HOM05D004922 ORTHO05D005990 4.2e-19 97.4 53 86.8
BraA02t08759Z Brassica rapa HOM05D004922 ORTHO05D005990 4.2e-19 97.4 53 86.8
BraA09t36102Z Brassica rapa HOM05D004922 ORTHO05D005990 4.2e-19 97.4 53 86.8
MCO15G079 Micromonas commoda HOM05D004922 ORTHO05D005990 5.5e-19 97.1 53 84.9
unitig_22.g5302 Utricularia gibba HOM05D004922 ORTHO05D005990 5.5e-19 97.1 53 84.9
unitig_8.g3754 Utricularia gibba HOM05D004922 ORTHO05D005990 5.5e-19 97.1 53 84.9
HanXRQChr11g0331491 Helianthus annuus HOM05D004922 ORTHO05D005990 2.1e-18 95.1 53 86.8
BcaB04g19588 Brassica carinata HOM05D004922 ORTHO05D005990 7.9e-18 93.2 53 83.0
DCAR_000537 Daucus carota HOM05D004922 ORTHO05D005990 1.8e-17 92.0 66 72.7
PRCOL_00003510 Prasinoderma coloniale HOM05D004922 ORTHO05D005990 8.7e-17 89.7 53 75.5
SGA_v2.0_scaffold8G04653 Striga asiatica HOM05D004922 ORTHO05D005990 7.4e-16 86.7 86 58.1
Haze_26353 Corylus avellana HOM05D004922 ORTHO05D005990 2.4e-14 81.6 53 64.2
CARHR182860 Cardamine hirsuta HOM05D004922 ORTHO05D005990 8.4e-12 73.2 53 71.7
Actinidia39954 Actinidia chinensis HOM05D004922 ORTHO05D005990 4.2e-11 70.9 53 73.6
CDE05G0301 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 1.6e-10 68.9 34 94.1
ATR0580G296 Amborella trichopoda HOM05D004922 ORTHO05D005990 2.8e-07 58.2 27 100.0
Oeu016707.1 Olea europaea HOM05D004922 ORTHO05D005990 2.8e-07 58.2 27 100.0
MD10G1019300 Malus domestica HOM05D004922 ORTHO05D005990 1.8e-06 55.5 27 96.3
Atru.chr10.1425 Acer truncatum HOM05D004922 ORTHO05D005990 2.4e-06 55.1 27 92.6


User provided reference genes

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