Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO08G102 Micromonas commoda HOM05D003934 ORTHO05D005108 1.1e-279 966.1 500 100.0
QL09p009520 Quercus lobata HOM05D003934 ORTHO05D005108 2.5e-132 476.5 511 52.3
CiPaw.05G251900 Carya illinoinensis HOM05D003934 ORTHO05D005108 1.8e-130 470.3 512 52.1
FAN03G1965 Fragaria x ananassa HOM05D003934 ORTHO05D005108 9.1e-130 468.0 512 51.2
FAN06G1603 Fragaria x ananassa HOM05D003934 ORTHO05D005108 9.1e-130 468.0 512 51.2
Nn3g19008 Nelumbo nucifera HOM05D003934 ORTHO05D005108 9.1e-130 468.0 514 52.7
FAN01G0480 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.2e-129 467.6 514 51.4
Psat5g078160 Pisum sativum HOM05D003934 ORTHO05D005108 1.5e-129 467.2 516 52.1
MD01G1219700 Malus domestica HOM05D003934 ORTHO05D005108 2.0e-129 466.8 513 52.2
MD07G1290300 Malus domestica HOM05D003934 ORTHO05D005108 3.4e-129 466.1 513 52.2
arahy.Tifrunner.gnm1.ann1.W6P66N Arachis hypogaea HOM05D003934 ORTHO05D005108 4.5e-129 465.7 513 51.7
CSS0014973 Camellia sinensis var. sinensis HOM05D003934 ORTHO05D005108 5.9e-129 465.3 512 52.1
Glyma.04G236800 Glycine max HOM05D003934 ORTHO05D005108 5.9e-129 465.3 512 52.3
Lalb_Chr08g0240341 Lupinus albus HOM05D003934 ORTHO05D005108 5.9e-129 465.3 515 51.8
RcHm_v2.0_Chr1g0331941 Rosa chinensis HOM05D003934 ORTHO05D005108 5.9e-129 465.3 512 51.2
AL6G16130 Arabidopsis lyrata HOM05D003934 ORTHO05D005108 1.0e-128 464.5 511 49.9
arahy.Tifrunner.gnm1.ann1.WX46MS Arachis hypogaea HOM05D003934 ORTHO05D005108 1.0e-128 464.5 513 51.5
Lj1g0022752 Lotus japonicus HOM05D003934 ORTHO05D005108 2.2e-128 463.4 513 52.4
Hma1.2p1_1188F.1_g265250 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 2.9e-128 463.0 512 49.2
Prupe.2G311500 Prunus persica HOM05D003934 ORTHO05D005108 3.8e-128 462.6 514 51.9
Pp3c5_21100 Physcomitrium patens HOM05D003934 ORTHO05D005108 5.0e-128 462.2 513 50.9
Phvul.009G053700 Phaseolus vulgaris HOM05D003934 ORTHO05D005108 6.5e-128 461.8 512 51.4
Lj1C1015T5 Lonicera japonica HOM05D003934 ORTHO05D005108 8.5e-128 461.5 512 51.6
PGR042G0302 Punica granatum HOM05D003934 ORTHO05D005108 8.5e-128 461.5 512 51.6
Manes.06G159600 Manihot esculenta HOM05D003934 ORTHO05D005108 1.4e-127 460.7 512 51.6
Potri.015G017200 Populus trichocarpa HOM05D003934 ORTHO05D005108 2.5e-127 459.9 512 50.8
ATR0602G008 Amborella trichopoda HOM05D003934 ORTHO05D005108 3.2e-127 459.5 512 51.8
Carub.0006s0504 Capsella rubella HOM05D003934 ORTHO05D005108 3.2e-127 459.5 512 48.2
Medtr3g091250 Medicago truncatula HOM05D003934 ORTHO05D005108 3.2e-127 459.5 511 51.5
Solyc03g083430.3 Solanum lycopersicum HOM05D003934 ORTHO05D005108 3.2e-127 459.5 512 51.6
TAR375G0202 Trochodendron aralioides HOM05D003934 ORTHO05D005108 4.2e-127 459.1 512 51.4
Sabra15G0013200 Salix brachista HOM05D003934 ORTHO05D005108 5.5e-127 458.8 512 51.0
Sopen03g023200 Solanum pennellii HOM05D003934 ORTHO05D005108 5.5e-127 458.8 512 51.4
Nitab4.5_0000714g0110 Nicotiana tabacum HOM05D003934 ORTHO05D005108 9.4e-127 458.0 513 49.7
Eucgr.A01467 Eucalyptus grandis HOM05D003934 ORTHO05D005108 1.2e-126 457.6 511 51.7
PGSC0003DMG400009079 Solanum tuberosum HOM05D003934 ORTHO05D005108 1.2e-126 457.6 512 51.4
Cre06.g297750 Chlamydomonas reinhardtii HOM05D003934 ORTHO05D005108 1.6e-126 457.2 546 46.7
GSVIVG01038711001 Vitis vinifera HOM05D003934 ORTHO05D005108 1.6e-126 457.2 512 48.8
Potri.012G012800 Populus trichocarpa HOM05D003934 ORTHO05D005108 2.7e-126 456.4 512 50.4
Mapoly0116s0041 Marchantia polymorpha HOM05D003934 ORTHO05D005108 3.6e-126 456.1 514 51.6
Glyma.06G127500 Glycine max HOM05D003934 ORTHO05D005108 4.7e-126 455.7 512 51.6
Aa31LG11G7140 Aethionema arabicum HOM05D003934 ORTHO05D005108 6.1e-126 455.3 512 50.6
Actinidia34211 Actinidia chinensis HOM05D003934 ORTHO05D005108 1.0e-125 454.5 512 48.6
PSO170G4033 Papaver somniferum HOM05D003934 ORTHO05D005108 1.4e-125 454.1 514 51.4
COL.COLO4_11261 Corchorus olitorius HOM05D003934 ORTHO05D005108 2.3e-125 453.4 512 51.6
Duzib068G1159 Durio zibethinus HOM05D003934 ORTHO05D005108 2.3e-125 453.4 512 51.4
PSO063G5737 Papaver somniferum HOM05D003934 ORTHO05D005108 2.3e-125 453.4 514 51.4
HPP92_021551 Vanilla planifolia HOM05D003934 ORTHO05D005108 3.0e-125 453.0 511 50.7
CsaV3_3G027880 Cucumis sativus L. HOM05D003934 ORTHO05D005108 3.9e-125 452.6 511 51.5
MSTRG.8665 Avicennia marina HOM05D003934 ORTHO05D005108 5.1e-125 452.2 512 48.6
Thhalv10013305m.g Eutrema salsugineum HOM05D003934 ORTHO05D005108 5.1e-125 452.2 510 48.2
CANSAT11G0158 Cannabis sativa HOM05D003934 ORTHO05D005108 6.7e-125 451.8 510 50.0
Cc02_g01680 Coffea canephora HOM05D003934 ORTHO05D005108 6.7e-125 451.8 516 51.0
CARHR206870 Cardamine hirsuta HOM05D003934 ORTHO05D005108 8.8e-125 451.4 516 50.6
Duzib205G1942 Durio zibethinus HOM05D003934 ORTHO05D005108 1.1e-124 451.1 512 51.2
Actinidia08639 Actinidia chinensis HOM05D003934 ORTHO05D005108 2.0e-124 450.3 512 48.6
Ciclev10004777m.g Citrus clementina HOM05D003934 ORTHO05D005108 2.0e-124 450.3 514 50.8
THA.LOC104816810 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 2.0e-124 450.3 512 51.8
THA.LOC104820263 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 2.0e-124 450.3 512 51.0
SGA_v2.0_scaffold44G16789 Striga asiatica HOM05D003934 ORTHO05D005108 2.6e-124 449.9 514 48.1
Sp6g36730 Schrenkiella parvula HOM05D003934 ORTHO05D005108 5.7e-124 448.7 512 50.0
AT5G06160 Arabidopsis thaliana HOM05D003934 ORTHO05D005108 7.4e-124 448.4 508 48.0
Gohir.A11G232300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 1.3e-123 447.6 514 51.4
HPP92_021541 Vanilla planifolia HOM05D003934 ORTHO05D005108 2.2e-123 446.8 511 50.1
BraA02t04872Z Brassica rapa HOM05D003934 ORTHO05D005108 3.7e-123 446.0 509 50.3
CAN.G108.66 Capsicum annuum HOM05D003934 ORTHO05D005108 3.7e-123 446.0 510 48.0
Sed0008190 Sechium edule HOM05D003934 ORTHO05D005108 3.7e-123 446.0 511 50.9
Migut.F00226 Erythranthe guttata HOM05D003934 ORTHO05D005108 6.3e-123 445.3 515 47.4
Lsat_1_v5_gn_9_58300 Lactuca sativa HOM05D003934 ORTHO05D005108 1.1e-122 444.5 506 48.2
Gohir.D09G179100 Gossypium hirsutum HOM05D003934 ORTHO05D005108 4.1e-122 442.6 512 50.8
Gorai.006G201100 Gossypium raimondii HOM05D003934 ORTHO05D005108 4.1e-122 442.6 512 50.8
Thecc.03G196100 Theobroma cacao HOM05D003934 ORTHO05D005108 4.1e-122 442.6 512 50.4
CDE10G0188 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 7.0e-122 441.8 513 49.9
Gohir.D11G243500 Gossypium hirsutum HOM05D003934 ORTHO05D005108 9.1e-122 441.4 512 50.6
Hund11672 Selenicereus undatus HOM05D003934 ORTHO05D005108 1.2e-121 441.0 507 46.9
EL10Ac3g05301 Beta vulgaris HOM05D003934 ORTHO05D005108 4.5e-121 439.1 512 47.7
C02p02610 Brassica napus HOM05D003934 ORTHO05D005108 4.5e-121 439.1 509 49.9
BolC2t06227H Brassica oleracea HOM05D003934 ORTHO05D005108 5.9e-121 438.7 509 49.7
Gohir.A09G184300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 1.7e-120 437.2 513 50.5
FvH4_7g06390 Fragaria vesca HOM05D003934 ORTHO05D005108 3.8e-120 436.0 508 49.2
AUR62006111 Chenopodium quinoa HOM05D003934 ORTHO05D005108 6.1e-118 428.7 517 45.8
Atru.chr1.153 Acer truncatum HOM05D003934 ORTHO05D005108 3.0e-117 426.4 488 50.4
AUR62019377 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.7e-115 420.6 581 42.3
ECA232G2652 Erigeron canadensis HOM05D003934 ORTHO05D005108 1.1e-114 417.9 518 46.3
CDE10G0405 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 5.3e-114 415.6 513 48.0
Oeu041045.2 Olea europaea HOM05D003934 ORTHO05D005108 7.0e-114 415.2 561 44.9
Os03g0717600 Oryza sativa ssp. japonica HOM05D003934 ORTHO05D005108 7.0e-114 415.2 510 47.5
Ca_16696_v3 Cicer arietinum L. HOM05D003934 ORTHO05D005108 2.9e-112 409.8 545 47.7
C03p02940 Brassica napus HOM05D003934 ORTHO05D005108 6.5e-112 408.7 513 45.8
BcaB01g05979 Brassica carinata HOM05D003934 ORTHO05D005108 1.5e-111 407.5 513 46.0
BraA03t09621Z Brassica rapa HOM05D003934 ORTHO05D005108 2.5e-111 406.8 520 46.0
BolC3t12849H Brassica oleracea HOM05D003934 ORTHO05D005108 1.6e-110 404.1 517 45.5
A03p02600 Brassica napus HOM05D003934 ORTHO05D005108 1.0e-109 401.4 520 45.8
HanXRQChr09g0252981 Helianthus annuus HOM05D003934 ORTHO05D005108 1.4e-109 401.0 462 48.5
SMO119G0296 Selaginella moellendorffii HOM05D003934 ORTHO05D005108 8.8e-109 398.3 512 46.1
TWI14G0523 Tripterygium wilfordii HOM05D003934 ORTHO05D005108 8.8e-109 398.3 508 46.7
Peaxi162Scf00550g00530 Petunia axillaris HOM05D003934 ORTHO05D005108 5.7e-108 395.6 509 47.3
FAN24G3520 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.1e-106 391.3 531 44.8
FvH4_1g22860 Fragaria vesca HOM05D003934 ORTHO05D005108 5.4e-106 389.0 506 48.8
FAN26G2519 Fragaria x ananassa HOM05D003934 ORTHO05D005108 4.5e-105 386.0 505 47.7
FAN23G2330 Fragaria x ananassa HOM05D003934 ORTHO05D005108 3.2e-103 379.8 505 46.5
Cpa.g.sc3.69 Carica papaya HOM05D003934 ORTHO05D005108 5.2e-101 372.5 506 45.8
FAN19G2010 Fragaria x ananassa HOM05D003934 ORTHO05D005108 7.7e-97 358.6 506 47.2
FAN10G3094 Fragaria x ananassa HOM05D003934 ORTHO05D005108 8.6e-96 355.1 523 42.3
PRCOL_00004948 Prasinoderma coloniale HOM05D003934 ORTHO05D005108 2.1e-94 350.5 515 41.6
vmacro06541 Vaccinium macrocarpon HOM05D003934 ORTHO05D005108 2.1e-94 350.5 510 42.4
BcaB05g21680 Brassica carinata HOM05D003934 ORTHO05D005108 1.8e-93 347.4 468 45.5
Sabra12G0018300 Salix brachista HOM05D003934 ORTHO05D005108 7.8e-89 332.0 548 40.3
Ah.07g205840 Amaranthus hybridus HOM05D003934 ORTHO05D005108 2.5e-87 327.0 509 39.9
Haze_00188 Corylus avellana HOM05D003934 ORTHO05D005108 2.1e-86 323.9 549 41.3
Haze_26996 Corylus avellana HOM05D003934 ORTHO05D005108 8.0e-86 322.0 547 39.3
Zm00001eb156600 Zea mays HOM05D003934 ORTHO05D005108 1.2e-84 318.2 379 51.5
Nitab4.5_0007081g0020 Nicotiana tabacum HOM05D003934 ORTHO05D005108 2.0e-84 317.4 509 39.9
CBR_g4095 Chara braunii HOM05D003934 ORTHO05D005108 4.4e-84 316.2 514 37.7
Cfa016252 Carpinus fangiana HOM05D003934 ORTHO05D005108 3.7e-83 313.2 507 41.0
FAN18G2200 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.4e-82 309.3 415 45.1
ClCG05G008860 Citrullus lanatus HOM05D003934 ORTHO05D005108 3.5e-81 306.6 507 41.4
HanXRQChr09g0252971 Helianthus annuus HOM05D003934 ORTHO05D005108 2.3e-80 303.9 541 37.7
FAN28G1126 Fragaria x ananassa HOM05D003934 ORTHO05D005108 6.6e-80 302.4 487 41.7
Oeu041318.2 Olea europaea HOM05D003934 ORTHO05D005108 6.6e-80 302.4 515 41.4
PSO782G1765 Papaver somniferum HOM05D003934 ORTHO05D005108 6.2e-78 295.8 517 36.8
SalBow4G2054 Salvia bowleyana HOM05D003934 ORTHO05D005108 4.6e-73 279.6 509 36.9
SalBow4G2493 Salvia bowleyana HOM05D003934 ORTHO05D005108 7.8e-73 278.9 509 36.9
AUR62019431 Chenopodium quinoa HOM05D003934 ORTHO05D005108 5.6e-71 272.7 399 41.9
FvH4_5g28470 Fragaria vesca HOM05D003934 ORTHO05D005108 1.2e-70 271.6 478 38.1
FAN27G0411 Fragaria x ananassa HOM05D003934 ORTHO05D005108 4.7e-70 269.6 435 40.9
MBI07_g07099_MAGBIO Magnolia biondii HOM05D003934 ORTHO05D005108 2.0e-68 264.2 328 45.1
FvH4_7g05370 Fragaria vesca HOM05D003934 ORTHO05D005108 2.6e-68 263.8 536 37.3
AUR62031013 Chenopodium quinoa HOM05D003934 ORTHO05D005108 3.7e-67 260.0 386 42.0
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 4.1e-66 256.5 528 33.5
AUR62034796 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.2e-65 255.0 387 40.8
Gorai.007G258600 Gossypium raimondii HOM05D003934 ORTHO05D005108 4.6e-65 253.1 370 42.4
Sc25g0000870 Simmondsia chinensis HOM05D003934 ORTHO05D005108 1.0e-64 251.9 368 41.8
FvH4_2g12040 Fragaria vesca HOM05D003934 ORTHO05D005108 2.8e-62 243.8 387 39.8
TPR.G17291 Trifolium pratense HOM05D003934 ORTHO05D005108 1.5e-60 238.0 292 45.2
FAN01G0659 Fragaria x ananassa HOM05D003934 ORTHO05D005108 8.4e-59 232.3 475 36.6
AagrBONN_evm.TU.Sc2ySwM_368.1804 Anthoceros agrestis HOM05D003934 ORTHO05D005108 4.2e-58 229.9 298 43.0
Aqoxy1G00997 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 2.5e-55 220.7 505 33.1
ATR0602G148 Amborella trichopoda HOM05D003934 ORTHO05D005108 9.6e-55 218.8 176 68.2
DCAR_026768 Daucus carota HOM05D003934 ORTHO05D005108 2.4e-53 214.2 187 56.7
FAN10G2167 Fragaria x ananassa HOM05D003934 ORTHO05D005108 6.9e-53 212.6 466 34.5
AUR62007347 Chenopodium quinoa HOM05D003934 ORTHO05D005108 4.9e-51 206.5 364 37.4
FAN10G1096 Fragaria x ananassa HOM05D003934 ORTHO05D005108 8.4e-51 205.7 459 33.8
Prupe.2G260300 Prunus persica HOM05D003934 ORTHO05D005108 3.2e-50 203.8 422 36.5
DCAR_009017 Daucus carota HOM05D003934 ORTHO05D005108 7.1e-50 202.6 182 57.1
SEGI_10674 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 9.3e-50 202.2 126 70.6
Aqoxy1G00994 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 1.4e-42 178.3 469 29.4
Aqoxy2G03740 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 1.5e-31 141.7 124 52.4
MBI07_g07098_MAGBIO Magnolia biondii HOM05D003934 ORTHO05D005108 3.5e-25 120.6 133 49.6
AUR62031016 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.4e-21 108.6 109 48.6
SEGI_10754 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 1.8e-21 108.2 145 42.8
SEGI_13646 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 4.1e-21 107.1 98 57.1
SEGI_13482 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 9.0e-21 105.9 177 32.8
Aqoxy1G01000 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 2.0e-15 88.2 58 69.0
A07p21690 Brassica napus HOM05D003934 ORTHO05D019879 4.3e-15 87.0 84 47.6
BolC6t37330H Brassica oleracea HOM05D003934 ORTHO05D019879 2.8e-14 84.3 84 46.4
BraA07t29851Z Brassica rapa HOM05D003934 ORTHO05D019879 6.3e-14 83.2 84 45.2
BcaC08g44628 Brassica carinata HOM05D003934 ORTHO05D019879 4.1e-13 80.5 197 29.9
C06p21480 Brassica napus HOM05D003934 ORTHO05D019879 4.1e-13 80.5 197 29.9
SEGI_36975 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 2.9e-11 74.3 95 36.8
SEGI_00747 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 6.1e-09 66.6 98 35.7
SEGI_09691 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 6.1e-09 66.6 98 35.7
BcaB02g07780 Brassica carinata HOM05D003934 ORTHO05D019879 7.9e-09 66.2 84 41.7
Sp5g08830 Schrenkiella parvula HOM05D003934 ORTHO05D005108 1.0e-08 65.9 171 32.2
HanXRQChr09g0252591 Helianthus annuus HOM05D003934 ORTHO05D019879 7.4e-07 59.7 49 57.1
Hma1.2p1_1973F.1_g309600 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 1.7e-06 58.5 27 85.2
AUR62031015 Chenopodium quinoa HOM05D003934 ORTHO05D005108 3.7e-06 57.4 65 40.0


User provided reference genes

Program Settings