Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI19_g20794_MAGBIO Magnolia biondii HOM05D006044 ORTHO05D007653 1.8e-63 245.7 124 100.0
Cfa009890 Carpinus fangiana HOM05D006044 ORTHO05D007653 4.2e-60 234.6 124 93.5
Haze_23252 Corylus avellana HOM05D006044 ORTHO05D007653 4.2e-60 234.6 124 93.5
ATR0763G184 Amborella trichopoda HOM05D006044 ORTHO05D007653 5.5e-60 234.2 125 96.0
Nn7g36759 Nelumbo nucifera HOM05D006044 ORTHO05D007653 9.3e-60 233.4 125 95.2
CiPaw.14G111700 Carya illinoinensis HOM05D006044 ORTHO05D007653 1.2e-59 233.0 124 92.7
Atru.chr3.2998 Acer truncatum HOM05D006044 ORTHO05D007653 1.6e-59 232.6 125 95.2
Cpa.g.sc157.53 Carica papaya HOM05D006044 ORTHO05D007653 2.1e-59 232.3 125 95.2
TAR633G2719 Trochodendron aralioides HOM05D006044 ORTHO05D007653 2.1e-59 232.3 125 94.4
GSVIVG01037329001 Vitis vinifera HOM05D006044 ORTHO05D007653 2.7e-59 231.9 123 94.3
SEGI_07566 Sequoiadendron giganteum HOM05D006044 ORTHO05D007653 3.5e-59 231.5 125 94.4
QL01p016848 Quercus lobata HOM05D006044 ORTHO05D007653 6.0e-59 230.7 124 92.7
PSO339G3702 Papaver somniferum HOM05D006044 ORTHO05D007653 7.9e-59 230.3 125 94.4
PSO384G3308 Papaver somniferum HOM05D006044 ORTHO05D007653 7.9e-59 230.3 125 94.4
Manes.01G177500 Manihot esculenta HOM05D006044 ORTHO05D007653 1.0e-58 229.9 125 93.6
Lalb_Chr10g0106211 Lupinus albus HOM05D006044 ORTHO05D007653 2.3e-58 228.8 125 92.0
Lalb_Chr17g0347851 Lupinus albus HOM05D006044 ORTHO05D007653 2.3e-58 228.8 125 92.0
LjContig00564g0010691 Lotus japonicus HOM05D006044 ORTHO05D007653 3.0e-58 228.4 120 93.3
Solyc01g008360.3 Solanum lycopersicum HOM05D006044 ORTHO05D007653 3.9e-58 228.0 124 91.1
Sopen01g003880 Solanum pennellii HOM05D006044 ORTHO05D007653 3.9e-58 228.0 124 91.1
PGSC0003DMG400016393 Solanum tuberosum HOM05D006044 ORTHO05D007653 3.9e-58 228.0 124 91.1
TPR.G16400 Trifolium pratense HOM05D006044 ORTHO05D007653 3.9e-58 228.0 120 93.3
Aqoxy2G00401 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 5.1e-58 227.6 124 91.9
Medtr5g089300 Medicago truncatula HOM05D006044 ORTHO05D007653 5.1e-58 227.6 125 92.0
TWI75G0655 Tripterygium wilfordii HOM05D006044 ORTHO05D007653 5.1e-58 227.6 125 92.8
Ciclev10017186m.g Citrus clementina HOM05D006044 ORTHO05D007653 6.7e-58 227.3 125 92.8
Glyma.02G278800 Glycine max HOM05D006044 ORTHO05D007653 6.7e-58 227.3 125 92.0
Gohir.A13G218400 Gossypium hirsutum HOM05D006044 ORTHO05D007653 6.7e-58 227.3 125 92.8
Gohir.D13G222100 Gossypium hirsutum HOM05D006044 ORTHO05D007653 6.7e-58 227.3 125 92.8
Gorai.013G253200 Gossypium raimondii HOM05D006044 ORTHO05D007653 6.7e-58 227.3 125 92.8
Phvul.008G202000 Phaseolus vulgaris HOM05D006044 ORTHO05D007653 6.7e-58 227.3 125 92.0
VMungo0647G0704 Vigna mungo HOM05D006044 ORTHO05D007653 6.7e-58 227.3 125 92.0
arahy.Tifrunner.gnm1.ann1.6RB8S0 Arachis hypogaea HOM05D006044 ORTHO05D007653 8.7e-58 226.9 125 92.0
arahy.Tifrunner.gnm1.ann1.L4QR06 Arachis hypogaea HOM05D006044 ORTHO05D007653 8.7e-58 226.9 125 92.0
CSS0014603 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 8.7e-58 226.9 125 92.0
Glyma.14G035900 Glycine max HOM05D006044 ORTHO05D007653 8.7e-58 226.9 125 91.2
THA.LOC104811201 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 8.7e-58 226.9 125 92.0
Thecc.09G247200 Theobroma cacao HOM05D006044 ORTHO05D007653 8.7e-58 226.9 125 92.0
CANSAT11G0073 Cannabis sativa HOM05D006044 ORTHO05D007653 1.1e-57 226.5 120 92.5
CDE09G0744 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 1.5e-57 226.1 124 92.7
Hma1.2p1_0214F.1_g090800 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 1.5e-57 226.1 123 91.1
Psat2g020640 Pisum sativum HOM05D006044 ORTHO05D007653 1.5e-57 226.1 125 91.2
Prupe.1G025000 Prunus persica HOM05D006044 ORTHO05D007653 1.5e-57 226.1 125 91.2
THA.LOC104799136 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 1.5e-57 226.1 125 92.0
FvH4_4g01940 Fragaria vesca HOM05D006044 ORTHO05D007653 1.9e-57 225.7 125 91.2
FAN12G1761 Fragaria x ananassa HOM05D006044 ORTHO05D007653 1.9e-57 225.7 125 91.2
FAN22G1152 Fragaria x ananassa HOM05D006044 ORTHO05D007653 1.9e-57 225.7 125 91.2
Hma1.2p1_1357F.1_g277915 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 1.9e-57 225.7 120 92.5
Oeu032567.1 Olea europaea HOM05D006044 ORTHO05D007653 1.9e-57 225.7 128 89.8
COL.COLO4_24488 Corchorus olitorius HOM05D006044 ORTHO05D007653 2.5e-57 225.3 125 91.2
Prupe.1G400800 Prunus persica HOM05D006044 ORTHO05D007653 3.3e-57 224.9 125 92.0
PGR102G0082 Punica granatum HOM05D006044 ORTHO05D007653 4.3e-57 224.6 125 91.2
Ca_11896_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 5.7e-57 224.2 125 89.6
Cc03_g11600 Coffea canephora HOM05D006044 ORTHO05D007653 5.7e-57 224.2 127 89.0
Lsat_1_v5_gn_2_28381 Lactuca sativa HOM05D006044 ORTHO05D007653 5.7e-57 224.2 120 90.8
Nitab4.5_0000069g0030 Nicotiana tabacum HOM05D006044 ORTHO05D007653 5.7e-57 224.2 125 90.4
Nitab4.5_0011609g0020 Nicotiana tabacum HOM05D006044 ORTHO05D007653 5.7e-57 224.2 125 90.4
Lsat_1_v5_gn_2_111680 Lactuca sativa HOM05D006044 ORTHO05D007653 7.4e-57 223.8 120 90.8
Sc12g0010240 Simmondsia chinensis HOM05D006044 ORTHO05D007653 7.4e-57 223.8 125 89.6
HPP92_019149 Vanilla planifolia HOM05D006044 ORTHO05D007653 7.4e-57 223.8 119 92.4
Nn017s41474 Nelumbo nucifera HOM05D006044 ORTHO05D007653 9.6e-57 223.4 123 91.1
Ca_06201_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 1.3e-56 223.0 125 89.6
Rhsim13G0207900 Rhododendron simsii HOM05D006044 ORTHO05D007653 1.3e-56 223.0 125 90.4
RcHm_v2.0_Chr4g0388901 Rosa chinensis HOM05D006044 ORTHO05D007653 1.3e-56 223.0 125 89.6
Peaxi162Scf00021g02522 Petunia axillaris HOM05D006044 ORTHO05D007653 1.6e-56 222.6 125 90.4
Potri.001G273200 Populus trichocarpa HOM05D006044 ORTHO05D007653 1.6e-56 222.6 123 91.9
ClCG02G022780 Citrullus lanatus HOM05D006044 ORTHO05D007653 2.1e-56 222.2 126 91.3
MELO3C014555.2 Cucumis melo HOM05D006044 ORTHO05D007653 2.1e-56 222.2 126 91.3
Eucgr.B03747 Eucalyptus grandis HOM05D006044 ORTHO05D007653 2.1e-56 222.2 125 90.4
HanXRQChr14g0453721 Helianthus annuus HOM05D006044 ORTHO05D007653 2.8e-56 221.9 120 90.0
MD08G1047500 Malus domestica HOM05D006044 ORTHO05D007653 2.8e-56 221.9 125 90.4
unitig_27.g25012 Utricularia gibba HOM05D006044 ORTHO05D007653 3.7e-56 221.5 128 88.3
Aa31LG3G15040 Aethionema arabicum HOM05D006044 ORTHO05D007653 4.8e-56 221.1 125 89.6
HanXRQChr07g0196181 Helianthus annuus HOM05D006044 ORTHO05D007653 4.8e-56 221.1 120 90.0
Ah.05g173120 Amaranthus hybridus HOM05D006044 ORTHO05D007653 1.4e-55 219.5 123 88.6
CDE08G0916 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 1.8e-55 219.2 120 92.5
Dinv37467 Davidia involucrata HOM05D006044 ORTHO05D007653 1.8e-55 219.2 116 94.0
Sabra09G0050500 Salix brachista HOM05D006044 ORTHO05D007653 2.4e-55 218.8 123 88.6
SalBow8G2527 Salvia bowleyana HOM05D006044 ORTHO05D007653 4.1e-55 218.0 120 90.0
Potri.009G067500 Populus trichocarpa HOM05D006044 ORTHO05D007653 6.9e-55 217.2 118 89.8
SGA_v2.0_scaffold310G48206 Striga asiatica HOM05D006044 ORTHO05D007653 6.9e-55 217.2 128 85.9
SGA_v2.0_scaffold3G01443 Striga asiatica HOM05D006044 ORTHO05D007653 6.9e-55 217.2 128 85.9
AagrBONN_evm.TU.Sc2ySwM_117.1592 Anthoceros agrestis HOM05D006044 ORTHO05D007653 9.0e-55 216.9 125 86.4
Migut.N02377 Erythranthe guttata HOM05D006044 ORTHO05D007653 9.0e-55 216.9 129 84.5
Mapoly0207s0011 Marchantia polymorpha HOM05D006044 ORTHO05D007653 9.0e-55 216.9 124 86.3
ECA238G3020 Erigeron canadensis HOM05D006044 ORTHO05D007653 1.2e-54 216.5 119 88.2
Pp3c1_15740 Physcomitrium patens HOM05D006044 ORTHO05D007653 1.2e-54 216.5 122 85.2
EL10Ac1g00766 Beta vulgaris HOM05D006044 ORTHO05D007653 1.5e-54 216.1 123 87.8
EL10Ac5g12840 Beta vulgaris HOM05D006044 ORTHO05D007653 1.5e-54 216.1 123 87.8
Dinv09443 Davidia involucrata HOM05D006044 ORTHO05D007653 2.0e-54 215.7 116 92.2
AUR62013740 Chenopodium quinoa HOM05D006044 ORTHO05D007653 2.6e-54 215.3 123 87.0
AUR62023411 Chenopodium quinoa HOM05D006044 ORTHO05D007653 2.6e-54 215.3 123 87.0
SalBow1G1993 Salvia bowleyana HOM05D006044 ORTHO05D000010 2.6e-54 215.3 119 89.1
A03p05430 Brassica napus HOM05D006044 ORTHO05D007653 4.5e-54 214.5 125 87.2
C03p06320 Brassica napus HOM05D006044 ORTHO05D007653 4.5e-54 214.5 125 87.2
BolC3t13140H Brassica oleracea HOM05D006044 ORTHO05D007653 4.5e-54 214.5 125 87.2
BraA03t09881Z Brassica rapa HOM05D006044 ORTHO05D007653 4.5e-54 214.5 125 87.2
A10p25610 Brassica napus HOM05D006044 ORTHO05D007653 5.8e-54 214.2 125 87.2
BraA10t44628Z Brassica rapa HOM05D006044 ORTHO05D007653 5.8e-54 214.2 125 87.2
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 7.6e-54 213.8 125 86.4
unitig_699.g19149 Utricularia gibba HOM05D006044 ORTHO05D007653 7.6e-54 213.8 128 86.7
Sp6g31450 Schrenkiella parvula HOM05D006044 ORTHO05D007653 1.3e-53 213.0 125 86.4
Zm00001eb062150 Zea mays HOM05D006044 ORTHO05D007653 1.3e-53 213.0 119 87.4
Zm00001eb212190 Zea mays HOM05D006044 ORTHO05D007653 1.3e-53 213.0 119 87.4
Thhalv10015024m.g Eutrema salsugineum HOM05D006044 ORTHO05D007653 1.7e-53 212.6 125 85.6
Os03g0811700 Oryza sativa ssp. japonica HOM05D006044 ORTHO05D007653 1.7e-53 212.6 119 86.6
AL6G22970 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 2.2e-53 212.2 125 86.4
AT5G12190 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 2.2e-53 212.2 125 86.4
BcaB01g05427 Brassica carinata HOM05D006044 ORTHO05D007653 2.9e-53 211.8 125 85.6
Carub.0006s1069 Capsella rubella HOM05D006044 ORTHO05D007653 1.1e-52 209.9 125 85.6
Ca_07394_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 9.3e-52 206.8 125 85.6
CBR_g501 Chara braunii HOM05D006044 ORTHO05D007653 1.6e-51 206.1 114 85.1
BcaNung07015 Brassica carinata HOM05D006044 ORTHO05D007653 1.3e-50 203.0 115 87.0
CARHR200930 Cardamine hirsuta HOM05D006044 ORTHO05D007653 2.5e-49 198.7 125 80.0
SMO143G0133 Selaginella moellendorffii HOM05D006044 ORTHO05D007653 6.3e-48 194.1 116 81.9
Aqoxy2G00402 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 1.2e-46 189.9 120 73.3
CSS0031497 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 3.8e-45 184.9 139 71.9
AL3G46680 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 7.2e-44 180.6 116 75.9
Cre03.g158950 Chlamydomonas reinhardtii HOM05D006044 ORTHO05D007653 2.1e-43 179.1 119 72.3
MD13G1049300 Malus domestica HOM05D006044 ORTHO05D007653 7.9e-43 177.2 106 84.9
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 3.7e-40 168.3 85 95.3
MCO15G700 Micromonas commoda HOM05D006044 ORTHO05D007653 6.9e-39 164.1 93 82.8
EL10Ac9g21533 Beta vulgaris HOM05D006044 ORTHO05D007653 1.1e-33 146.7 91 82.4
PRCOL_00006242 Prasinoderma coloniale HOM05D006044 ORTHO05D007653 1.2e-30 136.7 113 59.3
Haze_26695 Corylus avellana HOM05D006044 ORTHO05D007653 5.0e-29 131.3 113 50.4
AT2G14870 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 9.1e-23 110.5 70 71.4
SGA_v2.0_scaffold34G13906 Striga asiatica HOM05D006044 ORTHO05D007653 8.0e-19 97.4 96 54.2
SalBow1G3729 Salvia bowleyana HOM05D006044 ORTHO05D357234 1.8e-15 86.3 42 95.2
SGA_v2.0_scaffold5G02950 Striga asiatica HOM05D006044 ORTHO05D007653 2.9e-13 79.0 76 53.9
SGA_v2.0_scaffold198G41064 Striga asiatica HOM05D006044 ORTHO05D400222 6.3e-08 61.2 102 39.2
PGR102G3118 Punica granatum HOM05D002411 ORTHO05D002564 1.8e-07 59.7 84 39.3
Dinv40333 Davidia involucrata HOM05D001413 ORTHO05D001385 9.2e-07 57.4 102 34.3
COL.COLO4_11167 Corchorus olitorius HOM05D002411 ORTHO05D002564 1.2e-06 57.0 86 33.7
Pp3c14_2340 Physcomitrium patens HOM05D006044 ORTHO05D318821 1.6e-06 56.6 31 80.6
Duzib150G0537 Durio zibethinus HOM05D002411 ORTHO05D002564 3.5e-06 55.5 75 34.7
Duzib168G0560 Durio zibethinus HOM05D002411 ORTHO05D002564 3.5e-06 55.5 75 34.7
Gorai.003G183300 Gossypium raimondii HOM05D000142 ORTHO05D003173 3.5e-06 55.5 92 32.6
Thecc.09G359100 Theobroma cacao HOM05D002411 ORTHO05D002564 3.5e-06 55.5 75 34.7
Potri.005G024600 Populus trichocarpa HOM05D001413 ORTHO05D001385 4.5e-06 55.1 64 45.3
Aqoxy1G01640 Aquilegia oxysepala HOM05D005326 ORTHO05D006734 5.9e-06 54.7 92 32.6
Aqoxy2G00917 Aquilegia oxysepala HOM05D005326 ORTHO05D006734 5.9e-06 54.7 92 32.6
Dinv30820 Davidia involucrata HOM05D001413 ORTHO05D001385 5.9e-06 54.7 85 36.5
Mapoly0042s0009 Marchantia polymorpha HOM05D000142 ORTHO05D001253 5.9e-06 54.7 96 33.3
SGA_v2.0_scaffold146G36114 Striga asiatica HOM05D002411 ORTHO05D002564 5.9e-06 54.7 80 35.0
CANSAT56G2059 Cannabis sativa HOM05D000604 ORTHO05D004856 7.7e-06 54.3 114 29.8
Lj5A394G29 Lonicera japonica HOM05D001413 ORTHO05D001385 7.7e-06 54.3 87 35.6
MBI14_g23541_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 7.7e-06 54.3 80 38.8


User provided reference genes

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