Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI05_g27233_MAGBIO Magnolia biondii HOM05D004823 ORTHO05D005814 9.7e-167 590.1 306 100.0
MBI17_g09706_MAGBIO Magnolia biondii HOM05D004823 ORTHO05D005814 5.5e-29 132.5 96 74.0
MBI08_g06419_MAGBIO Magnolia biondii HOM05D004823 ORTHO05D005814 1.8e-27 127.5 68 89.7
MBI13_g01094_MAGBIO Magnolia biondii HOM05D002050 ORTHO05D001949 8.8e-27 125.2 83 75.9
MBI08_g07078_MAGBIO Magnolia biondii HOM05D004823 ORTHO05D005814 3.4e-26 123.2 70 85.7
Aqoxy7G00645 Aquilegia oxysepala HOM05D004823 ORTHO05D005814 2.8e-25 120.2 73 76.7
Aqoxy5G01066 Aquilegia oxysepala HOM05D004823 ORTHO05D005814 1.4e-24 117.9 73 75.3
Potri.014G180200 Populus trichocarpa HOM05D004823 ORTHO05D005814 1.8e-24 117.5 73 76.7
TAR375G0889 Trochodendron aralioides HOM05D004823 ORTHO05D005814 1.8e-24 117.5 73 72.6
Atru.chr5.23 Acer truncatum HOM05D004823 ORTHO05D005814 7.0e-24 115.5 87 64.4
Atru.chr5.51 Acer truncatum HOM05D004823 ORTHO05D005814 7.0e-24 115.5 87 64.4
Sabra14G0140400 Salix brachista HOM05D004823 ORTHO05D005814 1.2e-23 114.8 73 75.3
Dinv31197 Davidia involucrata HOM05D004823 ORTHO05D005814 1.6e-23 114.4 88 64.8
Manes.05G060200 Manihot esculenta HOM05D004823 ORTHO05D005814 2.7e-23 113.6 73 74.0
COL.COLO4_19317 Corchorus olitorius HOM05D004823 ORTHO05D005814 3.5e-23 113.2 87 63.2
Cfa011006 Carpinus fangiana HOM05D004823 ORTHO05D005814 4.5e-23 112.8 73 69.9
QL04p025376 Quercus lobata HOM05D004823 ORTHO05D005814 4.5e-23 112.8 73 69.9
GSVIVG01018404001 Vitis vinifera HOM05D004823 ORTHO05D005814 4.5e-23 112.8 73 72.6
Haze_02925 Corylus avellana HOM05D004823 ORTHO05D005814 5.9e-23 112.5 73 69.9
Hma1.2p1_0601F.1_g187160 Hydrangea macrophylla HOM05D004823 ORTHO05D005814 1.0e-22 111.7 73 69.9
Hma1.2p1_0601F.1_g187170 Hydrangea macrophylla HOM05D004823 ORTHO05D005814 1.0e-22 111.7 73 69.9
Prupe.2G112200 Prunus persica HOM05D004823 ORTHO05D005814 2.2e-22 110.5 73 67.1
Nn1g00608 Nelumbo nucifera HOM05D004823 ORTHO05D005814 2.9e-22 110.2 73 68.5
Thecc.10G001100 Theobroma cacao HOM05D004823 ORTHO05D005814 2.9e-22 110.2 86 60.5
Gohir.A05G333800 Gossypium hirsutum HOM05D004823 ORTHO05D005814 5.0e-22 109.4 87 59.8
Ciclev10018521m.g Citrus clementina HOM05D004823 ORTHO05D005814 8.5e-22 108.6 65 73.8
Gohir.D04G072675 Gossypium hirsutum HOM05D004823 ORTHO05D005814 8.5e-22 108.6 87 59.8
TWI23G0233 Tripterygium wilfordii HOM05D004823 ORTHO05D005814 8.5e-22 108.6 73 68.5
RcHm_v2.0_Chr1g0343241 Rosa chinensis HOM05D004823 ORTHO05D005814 1.1e-21 108.2 108 53.7
CSS0005414 Camellia sinensis var. sinensis HOM05D004823 ORTHO05D005814 1.5e-21 107.8 73 69.9
CiPaw.14G012800 Carya illinoinensis HOM05D004823 ORTHO05D005814 1.5e-21 107.8 88 56.8
Lsat_1_v5_gn_4_44681 Lactuca sativa HOM05D004823 ORTHO05D005814 1.5e-21 107.8 88 60.2
MD02G1227500 Malus domestica HOM05D004823 ORTHO05D005814 1.5e-21 107.8 80 65.0
Duzib106G1753 Durio zibethinus HOM05D004823 ORTHO05D005814 1.9e-21 107.5 87 60.9
Lj7C553G7 Lonicera japonica HOM05D004823 ORTHO05D005814 1.9e-21 107.5 65 75.4
Psat3g163800 Pisum sativum HOM05D004823 ORTHO05D005814 2.5e-21 107.1 72 68.1
Actinidia33293 Actinidia chinensis HOM05D004823 ORTHO05D005814 4.2e-21 106.3 99 56.6
ClCG05G002760 Citrullus lanatus HOM05D004823 ORTHO05D005814 4.2e-21 106.3 84 61.9
Eucgr.D01139 Eucalyptus grandis HOM05D004823 ORTHO05D005814 5.5e-21 105.9 92 62.0
CsaV3_3G010270 Cucumis sativus L. HOM05D004823 ORTHO05D005814 9.4e-21 105.1 73 68.5
Migut.B01471 Erythranthe guttata HOM05D004823 ORTHO05D005814 9.4e-21 105.1 73 63.0
Gorai.012G081700 Gossypium raimondii HOM05D004823 ORTHO05D005814 9.4e-21 105.1 87 58.6
Lj1g0025017 Lotus japonicus HOM05D004823 ORTHO05D005814 9.4e-21 105.1 72 63.9
TPR.G14862 Trifolium pratense HOM05D004823 ORTHO05D005814 9.4e-21 105.1 64 71.9
vmacro21094 Vaccinium macrocarpon HOM05D004823 ORTHO05D005814 9.4e-21 105.1 91 58.2
Medtr7g034575 Medicago truncatula HOM05D004823 ORTHO05D005814 1.2e-20 104.8 72 63.9
THA.LOC104808236 Tarenaya hassleriana HOM05D004823 ORTHO05D005814 1.2e-20 104.8 73 61.6
Sed0025177 Sechium edule HOM05D004823 ORTHO05D005814 1.6e-20 104.4 65 72.3
Aa31sc17G210 Aethionema arabicum HOM05D004823 ORTHO05D005814 2.1e-20 104.0 73 63.0
BcaC07g41923 Brassica carinata HOM05D004823 ORTHO05D005814 2.1e-20 104.0 73 63.0
Ca_04616_v3 Cicer arietinum L. HOM05D004823 ORTHO05D005814 2.1e-20 104.0 72 65.3
A09p65740 Brassica napus HOM05D004823 ORTHO05D005814 3.6e-20 103.2 73 63.0
C08p49810 Brassica napus HOM05D004823 ORTHO05D005814 3.6e-20 103.2 73 63.0
BolC8t52508H Brassica oleracea HOM05D004823 ORTHO05D005814 3.6e-20 103.2 73 63.0
BraA09t41917Z Brassica rapa HOM05D004823 ORTHO05D005814 3.6e-20 103.2 73 63.0
CARHR008760 Cardamine hirsuta HOM05D004823 ORTHO05D005814 3.6e-20 103.2 73 64.4
FAN06G0930 Fragaria x ananassa HOM05D004823 ORTHO05D005814 3.6e-20 103.2 65 72.3
MD07G1085900 Malus domestica HOM05D004823 ORTHO05D005814 3.6e-20 103.2 100 56.0
PGR083G0266 Punica granatum HOM05D004823 ORTHO05D005814 3.6e-20 103.2 87 58.6
ATR0705G062 Amborella trichopoda HOM05D004823 ORTHO05D005814 4.7e-20 102.8 73 63.0
FvH4_7g08480 Fragaria vesca HOM05D004823 ORTHO05D005814 4.7e-20 102.8 108 51.9
FAN03G0722 Fragaria x ananassa HOM05D004823 ORTHO05D005814 4.7e-20 102.8 65 70.8
FAN10G1986 Fragaria x ananassa HOM05D004823 ORTHO05D005814 4.7e-20 102.8 65 70.8
Ah.15g091500 Amaranthus hybridus HOM05D004823 ORTHO05D005814 6.1e-20 102.4 73 64.4
AUR62023352 Chenopodium quinoa HOM05D004823 ORTHO05D005814 6.1e-20 102.4 73 61.6
SEGI_04973 Sequoiadendron giganteum HOM05D004823 ORTHO05D005814 6.1e-20 102.4 76 55.3
Thhalv10006571m.g Eutrema salsugineum HOM05D004823 ORTHO05D005814 8.0e-20 102.1 73 61.6
Rhsim01G0145100 Rhododendron simsii HOM05D004823 ORTHO05D005814 8.0e-20 102.1 91 57.1
Sc08g0006560 Simmondsia chinensis HOM05D004823 ORTHO05D005814 8.0e-20 102.1 73 61.6
Cc00_g16960 Coffea canephora HOM05D004823 ORTHO05D005814 1.0e-19 101.7 73 63.0
Phvul.005G016100 Phaseolus vulgaris HOM05D004823 ORTHO05D005814 1.0e-19 101.7 73 60.3
Zm00001eb072560 Zea mays HOM05D004823 ORTHO05D005814 1.4e-19 101.3 73 63.0
SEGI_24819 Sequoiadendron giganteum HOM05D066805 ORTHO05D005814 1.8e-19 100.9 72 56.9
HPP92_003322 Vanilla planifolia HOM05D004823 ORTHO05D005814 1.8e-19 100.9 65 70.8
HPP92_003323 Vanilla planifolia HOM05D004823 ORTHO05D005814 1.8e-19 100.9 65 70.8
FAN10G0616 Fragaria x ananassa HOM05D004823 ORTHO05D005814 2.3e-19 100.5 108 50.9
PSO063G2621 Papaver somniferum HOM05D004823 ORTHO05D005814 2.3e-19 100.5 99 52.5
CANSAT21G1834 Cannabis sativa HOM05D004823 ORTHO05D005814 3.0e-19 100.1 73 60.3
Os04g0588200 Oryza sativa ssp. japonica HOM05D004823 ORTHO05D005814 4.0e-19 99.8 100 51.0
Sp1g07480 Schrenkiella parvula HOM05D004823 ORTHO05D005814 4.0e-19 99.8 73 61.6
SGA_v2.0_scaffold578G53026 Striga asiatica HOM05D004823 ORTHO05D005814 4.0e-19 99.8 73 61.6
AL1G19270 Arabidopsis lyrata HOM05D004823 ORTHO05D005814 6.8e-19 99.0 65 67.7
AT1G08840 Arabidopsis thaliana HOM05D004823 ORTHO05D005814 6.8e-19 99.0 65 67.7
MELO3C006248.2 Cucumis melo HOM05D004823 ORTHO05D005814 6.8e-19 99.0 73 64.4
ECA234G1924 Erigeron canadensis HOM05D004823 ORTHO05D005814 6.8e-19 99.0 101 52.5
PSO782G4318 Papaver somniferum HOM05D004823 ORTHO05D005814 6.8e-19 99.0 92 54.3
Hund17140 Selenicereus undatus HOM05D004823 ORTHO05D005814 6.8e-19 99.0 73 63.0
AUR62013806 Chenopodium quinoa HOM05D004823 ORTHO05D005814 8.8e-19 98.6 73 60.3
EL10Ac8g19253 Beta vulgaris HOM05D004823 ORTHO05D005814 1.5e-18 97.8 73 63.0
Carub.0001s0819 Capsella rubella HOM05D004823 ORTHO05D005814 1.5e-18 97.8 64 65.6
SHI13672 Sapria himalayana HOM05D004823 ORTHO05D005814 2.0e-18 97.4 66 60.6
HanXRQChr08g0226321 Helianthus annuus HOM05D004823 ORTHO05D005814 2.6e-18 97.1 86 58.1
Nitab4.5_0013532g0020 Nicotiana tabacum HOM05D004823 ORTHO05D005814 2.6e-18 97.1 87 54.0
arahy.Tifrunner.gnm1.ann1.61K3Y7 Arachis hypogaea HOM05D004823 ORTHO05D005814 3.4e-18 96.7 73 58.9
arahy.Tifrunner.gnm1.ann1.GG1KFP Arachis hypogaea HOM05D004823 ORTHO05D005814 3.4e-18 96.7 73 58.9
Solyc01g088380.3 Solanum lycopersicum HOM05D004823 ORTHO05D005814 7.5e-18 95.5 87 54.0
Sopen01g035210 Solanum pennellii HOM05D004823 ORTHO05D005814 7.5e-18 95.5 87 54.0
Nitab4.5_0006227g0020 Nicotiana tabacum HOM05D004823 ORTHO05D005814 1.3e-17 94.7 87 51.7
AagrBONN_evm.TU.Sc2ySwM_362.2737 Anthoceros agrestis HOM05D004823 ORTHO05D005814 2.2e-17 94.0 73 56.2
CAN.G1480.3 Capsicum annuum HOM05D004823 ORTHO05D005814 2.2e-17 94.0 87 52.9
Oeu034864.1 Olea europaea HOM05D004823 ORTHO05D005814 2.2e-17 94.0 92 51.1
CDE11G0754 Ceratophyllum demersum HOM05D004823 ORTHO05D005814 4.9e-17 92.8 73 63.0
Mapoly0039s0120 Marchantia polymorpha HOM05D004823 ORTHO05D005814 6.3e-17 92.4 81 49.4
Peaxi162Scf01124g00124 Petunia axillaris HOM05D004823 ORTHO05D005814 6.3e-17 92.4 86 52.3
Glyma.06G310500 Glycine max HOM05D004823 ORTHO05D005814 8.3e-17 92.0 91 51.6
VMungo1080G1086 Vigna mungo HOM05D004823 ORTHO05D005814 8.3e-17 92.0 70 58.6
DCAR_029534 Daucus carota HOM05D004823 ORTHO05D005814 1.4e-16 91.3 73 60.3
Peaxi162Scf00417g00039 Petunia axillaris HOM05D004823 ORTHO05D005814 9.1e-16 88.6 70 55.7
MBI15_g07200_MAGBIO Magnolia biondii HOM05D004823 ORTHO05D005814 5.9e-15 85.9 39 100.0
unitig_8.g3844 Utricularia gibba HOM05D004823 ORTHO05D005814 6.6e-14 82.4 80 55.0
Cpa.g.sc10.21 Carica papaya HOM05D004823 ORTHO05D005814 3.3e-13 80.1 65 56.9
Psat2g050360 Pisum sativum HOM05D004823 ORTHO05D005814 2.8e-12 77.0 61 50.8
Psat2g050440 Pisum sativum HOM05D004823 ORTHO05D036791 3.6e-12 76.6 61 50.8
RcHm_v2.0_Chr2g0122961 Rosa chinensis HOM05D004823 ORTHO05D005814 3.6e-12 76.6 53 66.0
Psat5g098920 Pisum sativum HOM05D004823 ORTHO05D005814 1.8e-11 74.3 56 51.8
CBR_g41486 Chara braunii HOM05D004823 ORTHO05D005814 4.0e-11 73.2 83 44.6
Cc07_g20090 Coffea canephora HOM05D004823 ORTHO05D005814 1.4e-08 64.7 51 58.8
Cfa026676 Carpinus fangiana HOM05D004823 ORTHO05D005814 3.5e-07 60.1 55 49.1
PRCOL_00002243 Prasinoderma coloniale HOM05D004823 ORTHO05D005814 5.0e-06 56.2 86 34.9


User provided reference genes

Program Settings