Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 2.4e-242 842.0 514 100.0
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 5.1e-237 824.3 514 96.3
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 9.7e-236 820.1 514 91.2
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 1.1e-234 816.6 514 95.3
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 4.1e-234 814.7 514 95.5
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 3.4e-233 811.6 514 94.6
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 8.5e-232 807.0 514 94.9
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 1.1e-231 806.6 513 94.9
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 3.2e-231 805.1 513 94.2
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 4.6e-230 801.2 514 93.6
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 6.1e-230 800.8 514 92.6
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 7.9e-230 800.4 514 93.4
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 7.9e-230 800.4 514 92.0
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 1.1e-228 796.6 512 93.8
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 1.1e-228 796.6 514 93.2
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 1.1e-228 796.6 513 92.2
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 4.3e-228 794.7 513 92.0
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 7.4e-228 793.9 514 92.8
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 1.3e-227 793.1 514 91.6
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 1.3e-227 793.1 513 91.8
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 1.7e-227 792.7 514 93.4
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 6.3e-227 790.8 514 86.8
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 8.2e-227 790.4 514 91.1
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 1.1e-226 790.0 514 91.6
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 1.4e-226 789.6 512 91.6
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 2.6e-225 785.4 514 87.2
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 2.6e-225 785.4 510 89.0
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 7.7e-225 783.9 513 93.0
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 7.7e-225 783.9 510 92.4
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 7.7e-225 783.9 510 92.7
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 1.0e-224 783.5 513 90.8
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 2.2e-224 782.3 510 88.4
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 2.2e-224 782.3 510 89.2
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 3.8e-224 781.6 514 91.2
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 6.5e-224 780.8 504 93.1
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 8.5e-224 780.4 513 91.2
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 8.5e-224 780.4 514 90.3
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 1.1e-223 780.0 514 91.2
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 1.1e-223 780.0 514 91.1
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 1.4e-223 779.6 514 91.4
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 1.4e-223 779.6 511 92.8
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 1.9e-223 779.2 511 87.5
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 1.9e-223 779.2 514 90.7
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 2.5e-223 778.9 513 91.8
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 3.2e-223 778.5 536 88.4
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 4.2e-223 778.1 514 92.0
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 5.5e-223 777.7 514 91.8
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 5.5e-223 777.7 511 91.0
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 5.5e-223 777.7 512 91.6
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 9.4e-223 776.9 512 91.6
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 1.6e-222 776.2 511 90.8
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 4.7e-222 774.6 514 92.0
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 4.7e-222 774.6 514 90.5
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 4.7e-222 774.6 504 90.9
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 1.4e-221 773.1 514 90.7
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 1.8e-221 772.7 514 86.4
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 8.8e-221 770.4 514 90.3
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 1.5e-220 769.6 514 88.7
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 2.0e-220 769.2 512 92.2
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 5.7e-220 767.7 514 91.8
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 7.4e-220 767.3 509 85.5
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 7.4e-220 767.3 527 79.9
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 2.2e-219 765.8 511 90.6
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 2.8e-219 765.4 504 91.3
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 8.2e-219 763.8 504 90.9
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 1.8e-218 762.7 512 90.2
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 9.1e-218 760.4 535 83.7
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 9.1e-218 760.4 514 90.1
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 1.3e-216 756.5 511 87.7
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 1.7e-216 756.1 511 84.5
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 5.0e-216 754.6 513 87.3
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 5.0e-216 754.6 515 88.3
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 6.5e-216 754.2 513 84.6
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 8.5e-216 753.8 514 84.6
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 1.9e-215 752.7 507 89.7
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 7.2e-215 750.7 514 84.2
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 7.2e-215 750.7 514 84.2
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 3.9e-213 745.0 511 83.2
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 1.1e-212 743.4 514 89.1
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 2.6e-212 742.3 511 85.3
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 5.7e-212 741.1 509 90.8
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 1.7e-211 739.6 514 78.4
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 3.7e-211 738.4 485 92.2
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 8.2e-211 737.3 511 85.9
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 8.2e-211 737.3 542 80.1
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 1.1e-210 736.9 514 86.0
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 1.4e-210 736.5 511 81.2
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 7.0e-210 734.2 509 85.9
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 7.0e-210 734.2 509 85.9
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 1.6e-209 733.0 511 85.5
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 6.5e-208 727.6 500 85.8
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.9e-207 726.1 514 82.9
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 2.8e-203 712.2 514 76.8
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 5.3e-202 708.0 520 82.9
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 2.0e-201 706.1 535 80.6
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 4.5e-201 704.9 511 84.9
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 1.1e-199 700.3 484 89.0
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 1.9e-199 699.5 557 77.2
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 7.2e-199 697.6 464 94.8
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 1.2e-198 696.8 514 81.5
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 4.7e-198 694.9 514 79.2
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 6.8e-197 691.0 551 71.9
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 7.5e-196 687.6 514 81.3
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.7e-193 679.1 513 86.0
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 3.8e-192 675.2 468 89.5
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 9.5e-191 670.6 525 81.1
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 3.0e-189 665.6 511 73.0
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 7.3e-183 644.4 435 89.0
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 3.6e-182 642.1 430 93.7
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 1.2e-177 627.1 428 90.4
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 5.1e-160 568.5 518 68.7
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 5.8e-156 555.1 414 86.0
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 6.2e-150 535.0 511 66.5
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 1.3e-142 510.8 269 92.6
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 5.8e-132 475.3 254 92.5
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 1.0e-128 464.5 322 88.5
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 6.5e-123 445.3 311 81.0
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 2.0e-116 423.7 385 61.6
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 2.1e-105 387.1 210 93.3
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 4.7e-105 386.0 210 92.9
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 2.5e-98 363.6 365 79.2
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.8e-78 297.0 257 82.1
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 3.3e-74 283.5 522 48.9
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 7.0e-69 265.8 175 88.6
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 2.2e-62 244.2 134 93.3
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 2.7e-60 237.3 526 34.2
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 5.8e-47 193.0 99 87.9
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 2.1e-41 174.5 254 40.2
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 2.4e-40 171.0 106 78.3
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 9.9e-39 165.6 80 95.0
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 1.1e-34 152.1 80 95.0
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 4.8e-33 146.7 178 51.7
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 1.5e-31 141.7 137 61.3
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 3.8e-30 137.1 107 68.2
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 2.3e-27 127.9 70 88.6
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 4.3e-26 123.6 299 28.8
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 1.3e-25 122.1 69 85.5
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 1.1e-24 119.0 64 85.9
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 1.1e-24 119.0 64 85.9
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 2.7e-20 104.4 56 82.1
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 9.6e-18 95.9 56 71.4
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 9.6e-18 95.9 47 89.4
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.1e-16 92.4 47 97.9
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 1.4e-16 92.0 73 61.6
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 1.4e-16 92.0 73 61.6
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 1.7e-14 85.1 41 92.7
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 3.2e-13 80.9 41 87.8
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 4.2e-13 80.5 122 41.0
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 1.8e-11 75.1 105 42.9
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 5.1e-11 73.6 36 86.1
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 1.1e-08 65.9 134 72.4
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 1.7e-06 58.5 35 74.3
TPR.G36494 Trifolium pratense HOM05D009291 ORTHO05D010716 2.2e-06 58.2 29 82.8
Lsat_1_v5_gn_3_52840 Lactuca sativa HOM05D004842 ORTHO05D005929 3.8e-06 57.4 35 71.4
Actinidia23032 Actinidia chinensis HOM05D004842 ORTHO05D008384 5.0e-06 57.0 74 51.4
Oeu002300.1 Olea europaea HOM05D004842 ORTHO05D005929 8.5e-06 56.2 57 56.1


User provided reference genes

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