Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 2.3e-160 568.9 308 100.0
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 2.4e-117 426.0 308 77.6
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 1.5e-114 416.8 308 76.3
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 9.0e-112 407.5 308 74.0
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 2.2e-110 402.9 308 74.4
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 7.1e-109 397.9 324 68.2
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 3.0e-107 392.5 308 72.4
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 4.3e-106 388.7 308 71.8
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 7.3e-106 387.9 308 71.8
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 1.6e-105 386.7 308 70.8
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 1.6e-105 386.7 308 72.1
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 2.1e-105 386.3 315 70.2
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 4.8e-105 385.2 308 71.4
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 4.8e-105 385.2 308 67.9
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 4.0e-104 382.1 308 71.1
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 5.3e-104 381.7 308 68.8
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 9.0e-104 380.9 308 69.8
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 1.2e-103 380.6 308 71.4
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 9.9e-103 377.5 308 71.1
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 1.7e-102 376.7 308 69.5
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 1.7e-102 376.7 308 68.2
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 2.9e-102 375.9 308 69.2
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 6.4e-102 374.8 308 67.2
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.4e-101 373.6 308 67.9
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.4e-101 373.6 308 67.9
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 3.2e-101 372.5 308 67.9
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 3.2e-101 372.5 308 69.5
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 7.1e-101 371.3 286 70.6
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 9.3e-101 370.9 308 68.8
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 2.7e-100 369.4 308 66.9
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 2.7e-100 369.4 308 70.5
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 4.6e-100 368.6 308 68.8
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 2.3e-99 366.3 300 67.7
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 3.9e-99 365.5 308 68.5
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 1.5e-98 363.6 308 68.5
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 1.5e-98 363.6 309 66.0
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 1.9e-98 363.2 304 68.8
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 4.3e-98 362.1 310 67.1
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 9.6e-98 360.9 308 65.9
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 2.1e-97 359.8 308 67.5
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 1.1e-96 357.5 308 66.6
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 1.4e-96 357.1 306 68.3
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 3.1e-96 355.9 309 65.4
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 3.1e-96 355.9 309 65.4
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 6.9e-96 354.8 297 70.0
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 9.0e-96 354.4 308 67.2
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 2.0e-95 353.2 295 68.5
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 3.4e-95 352.4 309 64.7
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 5.8e-95 351.7 308 67.9
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 9.9e-95 350.9 308 68.2
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 2.9e-94 349.4 309 67.0
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 2.9e-94 349.4 295 68.1
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 3.8e-94 349.0 302 67.9
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 3.8e-94 349.0 309 67.0
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 3.8e-94 349.0 308 63.6
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 4.9e-94 348.6 303 67.0
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 8.4e-94 347.8 306 65.4
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 1.1e-93 347.4 302 67.5
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 2.4e-93 346.3 306 64.7
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 2.4e-93 346.3 307 64.2
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 2.4e-93 346.3 304 66.1
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 2.4e-93 346.3 307 64.5
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 5.5e-93 345.1 308 67.5
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 7.1e-93 344.7 310 66.8
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 9.3e-93 344.4 299 66.9
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 1.6e-92 343.6 309 65.0
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 1.6e-92 343.6 340 63.5
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 1.0e-91 340.9 308 63.3
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 1.3e-91 340.5 305 64.9
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 5.1e-91 338.6 308 63.3
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 5.1e-91 338.6 307 63.8
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 2.5e-90 336.3 295 67.5
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 1.3e-89 334.0 281 68.7
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 8.2e-89 331.3 262 68.7
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 1.1e-88 330.9 271 69.4
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 1.4e-88 330.5 283 66.1
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 1.4e-88 330.5 308 64.0
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 1.4e-88 330.5 308 63.6
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 4.0e-88 328.9 277 66.4
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 5.3e-88 328.6 308 62.3
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 6.9e-88 328.2 308 63.6
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 1.5e-87 327.0 300 62.0
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 3.4e-87 325.9 260 71.5
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 3.4e-87 325.9 303 64.7
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 1.3e-86 323.9 286 65.4
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 2.2e-86 323.2 260 71.2
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 2.2e-86 323.2 278 67.6
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 2.9e-86 322.8 260 71.2
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 2.9e-86 322.8 287 66.6
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 2.9e-86 322.8 282 65.2
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 3.8e-86 322.4 260 68.8
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 3.8e-86 322.4 260 68.8
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 4.9e-86 322.0 277 66.1
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 4.9e-86 322.0 232 76.7
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 8.4e-86 321.2 232 76.7
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 8.4e-86 321.2 287 66.2
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 1.4e-85 320.5 278 67.3
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 1.4e-85 320.5 260 67.7
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 4.2e-85 318.9 260 67.7
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 4.2e-85 318.9 306 64.1
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 4.2e-85 318.9 313 61.7
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 7.1e-85 318.2 307 60.6
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 2.3e-83 313.2 284 67.3
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 3.3e-82 309.3 267 67.8
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 4.3e-82 308.9 309 60.2
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 6.3e-81 305.1 281 62.3
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 1.8e-80 303.5 262 65.3
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 1.8e-80 303.5 308 61.7
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 1.9e-77 293.5 308 58.4
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 1.2e-76 290.8 211 77.7
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 1.5e-71 273.9 275 58.9
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 2.6e-71 273.1 272 61.4
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 8.5e-70 268.1 314 54.1
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 9.4e-69 264.6 250 63.2
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 6.7e-67 258.5 153 87.6
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 5.7e-66 255.4 153 86.9
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 7.0e-64 248.4 224 65.2
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 1.8e-59 233.8 308 49.4
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 7.2e-53 211.8 158 66.5
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 3.6e-52 209.5 154 71.4
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 6.7e-51 205.3 125 84.0
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 9.7e-50 201.4 288 43.8
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 2.0e-47 193.7 308 43.5
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 5.9e-47 192.2 153 68.0
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.1e-45 188.0 153 66.7
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 4.4e-42 176.0 209 53.1
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 4.8e-41 172.6 154 63.6
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 3.5e-39 166.4 154 61.7
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.9e-38 163.3 154 60.4
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 2.0e-31 140.6 105 67.6
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 4.5e-31 139.4 230 38.3
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 2.3e-27 127.1 67 89.6
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 2.0e-23 114.0 155 48.4
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 2.6e-18 97.1 160 42.5
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 4.9e-17 92.8 73 60.3
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 5.4e-16 89.4 116 52.6
PSO591G0416 Papaver somniferum HOM05D005498 ORTHO05D006719 1.9e-13 80.9 73 63.0
RcHm_v2.0_Chr4g0427471 Rosa chinensis HOM05D000753 ORTHO05D006719 3.6e-12 76.6 156 42.3
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 1.2e-10 71.6 42 76.2
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 3.2e-08 63.5 173 31.2


User provided reference genes

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