Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 0.0e+00 2370.5 1268 100.0
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 0.0e+00 1789.6 1231 79.5
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 0.0e+00 1775.0 1232 78.7
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 0.0e+00 1770.7 1130 84.5
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 0.0e+00 1763.4 1124 84.7
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 0.0e+00 1742.6 1232 77.7
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 0.0e+00 1721.8 1145 81.3
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 0.0e+00 1720.3 1231 77.0
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 0.0e+00 1719.9 1155 81.0
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1716.4 1231 77.3
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1714.5 1142 81.3
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 0.0e+00 1704.5 1255 74.4
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1701.0 1144 80.6
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 0.0e+00 1699.9 1157 80.2
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 0.0e+00 1696.8 1154 78.1
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 0.0e+00 1692.2 1136 80.5
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1689.9 1157 78.0
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 0.0e+00 1685.2 1136 80.2
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1684.5 1146 79.1
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1683.3 1155 79.3
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1682.9 1149 79.4
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 0.0e+00 1679.1 1152 79.1
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1677.5 1152 78.7
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 0.0e+00 1675.2 1210 76.9
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 0.0e+00 1673.3 1169 78.8
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 0.0e+00 1672.9 1150 77.7
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1671.4 1152 78.6
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 0.0e+00 1667.9 1239 74.9
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 0.0e+00 1662.9 1128 78.8
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1662.9 1129 79.0
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 0.0e+00 1662.5 1155 78.8
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 0.0e+00 1661.7 1158 77.5
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 0.0e+00 1661.4 1157 78.7
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 0.0e+00 1657.1 1146 78.3
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1656.0 1130 78.9
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 0.0e+00 1651.0 1139 79.2
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 0.0e+00 1648.6 1156 77.2
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1646.3 1155 78.4
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 0.0e+00 1640.2 1155 77.4
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1639.4 1156 77.2
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 0.0e+00 1638.6 1242 74.2
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 0.0e+00 1638.2 1184 76.3
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1635.9 1157 76.6
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 0.0e+00 1635.2 1147 77.2
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 0.0e+00 1632.1 1154 77.5
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1631.7 1152 76.5
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1628.6 1158 76.4
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1626.7 1209 74.9
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 0.0e+00 1626.3 1161 76.1
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1624.4 1152 77.4
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1624.0 1156 74.9
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 0.0e+00 1619.4 1238 72.1
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1613.6 1240 73.5
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1611.3 1161 76.3
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 0.0e+00 1608.2 1153 75.8
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 0.0e+00 1599.3 1173 74.5
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 0.0e+00 1597.4 1172 75.2
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1597.0 1164 74.5
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 0.0e+00 1592.4 1130 77.4
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 0.0e+00 1589.7 1161 75.1
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 0.0e+00 1588.2 1157 72.9
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 0.0e+00 1586.2 1150 75.0
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 0.0e+00 1585.9 1155 74.8
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 0.0e+00 1572.8 1370 66.8
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1562.0 1156 73.4
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 0.0e+00 1559.7 1150 74.3
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1556.6 1156 73.2
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1550.0 1163 73.3
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1547.3 1160 73.7
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1540.8 1154 73.2
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 0.0e+00 1540.0 1174 71.4
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1538.9 1258 69.2
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1533.9 1158 70.9
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1533.9 1158 70.9
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1532.7 1098 74.9
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 0.0e+00 1530.4 1157 71.0
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1530.0 1150 71.0
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1529.2 1057 78.3
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 0.0e+00 1526.9 1157 72.8
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 0.0e+00 1519.2 1157 71.8
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1512.3 1161 72.7
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 0.0e+00 1507.3 1159 70.8
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 0.0e+00 1498.4 1158 70.3
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 0.0e+00 1490.3 1202 69.6
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1482.6 1156 70.2
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1479.2 1159 70.1
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 0.0e+00 1475.7 1163 69.8
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1475.3 1161 69.9
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1473.8 1228 68.6
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 0.0e+00 1473.0 1158 70.2
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 0.0e+00 1473.0 1167 69.5
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1472.2 1161 69.4
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 0.0e+00 1456.4 1116 71.9
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1442.2 1157 68.9
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 0.0e+00 1437.6 1135 71.8
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1415.6 1154 67.4
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1401.7 1212 66.3
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 0.0e+00 1361.7 1177 63.0
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 0.0e+00 1349.0 854 80.8
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 0.0e+00 1346.6 982 75.5
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 0.0e+00 1341.6 1157 65.3
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1322.8 876 79.8
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 0.0e+00 1315.8 1143 65.1
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1198.7 789 81.1
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 0.0e+00 1163.7 781 78.4
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 0.0e+00 1136.3 1178 54.2
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1133.2 888 73.1
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 0.0e+00 1101.3 727 81.4
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 5.2e-307 1058.1 786 70.5
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 1.6e-303 1046.6 650 84.5
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 1.6e-292 1010.0 908 67.3
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 1.6e-287 993.4 971 61.2
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.3e-283 979.5 719 72.2
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.3e-214 750.4 594 68.2
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 3.7e-196 689.9 533 67.5
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 1.6e-175 621.3 477 71.9
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 1.4e-163 581.6 1062 37.9
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 1.1e-160 572.0 427 75.6
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 3.4e-157 560.5 294 93.2
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 1.2e-146 525.4 327 83.8
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 5.1e-129 466.8 375 71.2
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 3.4e-125 454.1 1134 34.1
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.0e-124 452.6 371 69.3
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 7.4e-120 436.4 237 89.9
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 2.6e-117 427.9 851 37.3
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 2.1e-98 365.2 573 41.9
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 4.8e-95 354.0 317 61.8
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 1.9e-91 342.0 1273 27.3
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 1.2e-88 332.8 212 77.4
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 2.8e-87 328.2 174 91.4
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 2.8e-87 328.2 181 86.2
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 2.8e-87 328.2 181 86.2
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 1.1e-83 316.2 338 59.8
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 8.0e-82 310.1 224 71.9
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 9.5e-75 286.6 213 69.0
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 2.8e-74 285.0 342 55.8
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 4.7e-74 284.3 213 68.5
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 8.0e-74 283.5 340 54.7
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 3.9e-68 264.6 316 55.1
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 4.7e-66 257.7 410 42.0
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 1.3e-60 239.6 143 85.3
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 9.5e-59 233.4 131 89.3
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 3.1e-57 228.4 164 72.0
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 5.2e-57 227.6 317 53.0
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 4.9e-55 221.1 154 74.7
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 5.6e-51 207.6 138 75.4
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 9.5e-51 206.8 326 42.0
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 3.4e-48 198.4 233 52.4
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.1e-43 183.3 162 67.3
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 2.9e-39 168.7 96 85.4
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 1.9e-38 166.0 120 69.2
Psat7g256680 Pisum sativum HOM05D003924 ORTHO05D005216 1.0e-36 160.2 219 51.1
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 1.5e-35 156.4 222 45.5
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.5e-35 156.4 104 75.0
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 7.6e-32 144.1 77 89.6
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 6.4e-31 141.0 123 63.4
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 2.1e-29 136.0 103 76.7
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 1.4e-25 123.2 87 69.0
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 1.8e-25 122.9 83 68.7
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 9.0e-25 120.6 75 78.7
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.7e-23 116.3 114 63.2
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 4.2e-22 111.7 65 87.7
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 7.1e-22 110.9 67 86.6
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 3.0e-20 105.5 75 74.7
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 3.9e-20 105.1 72 73.6
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 1.4e-17 96.7 69 66.7
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 4.0e-17 95.1 57 77.2
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 9.0e-17 94.0 57 75.4
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 1.2e-16 93.6 77 61.0
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 1.0e-12 80.5 119 46.2
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 2.3e-12 79.3 46 87.0
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 1.6e-10 73.2 56 60.7
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 3.1e-09 68.9 79 57.0
C07p01420 Brassica napus HOM05D000209 ORTHO05D000129 9.0e-09 67.4 154 37.7
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 7.7e-08 64.3 42 66.7
Lsat_1_v5_gn_8_86941 Lactuca sativa HOM05D002786 ORTHO05D003493 7.7e-08 64.3 98 49.0
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 5.0e-07 61.6 47 55.3
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 5.5e-06 58.2 54 55.6


User provided reference genes

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