Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 0.0e+00 2177.9 1209 100.0
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 0.0e+00 1919.4 1216 87.3
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1914.0 1216 87.6
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 0.0e+00 1908.6 1216 88.0
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1901.3 1216 84.3
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 0.0e+00 1901.3 1212 87.5
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1891.7 1216 87.1
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1877.1 1214 85.0
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1864.0 1195 86.6
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 0.0e+00 1848.2 1192 87.0
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1796.6 1122 87.9
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 0.0e+00 1780.8 1214 81.1
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1768.8 1199 83.2
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 0.0e+00 1736.1 1215 81.0
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1728.4 1216 77.4
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 0.0e+00 1721.4 1214 79.1
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 0.0e+00 1718.4 1214 78.5
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1715.3 1212 78.5
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 0.0e+00 1710.7 1215 78.8
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1707.6 1212 78.8
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1704.1 1216 78.3
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1702.2 1210 77.9
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 0.0e+00 1699.5 1215 78.6
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 0.0e+00 1696.4 1215 77.0
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 0.0e+00 1695.2 1216 77.0
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1694.9 1216 78.5
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 0.0e+00 1693.7 1216 78.0
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1692.2 1216 78.5
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 0.0e+00 1690.6 1221 77.6
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 0.0e+00 1684.8 1216 77.8
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1682.2 1249 76.1
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 0.0e+00 1680.6 1268 75.4
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 0.0e+00 1678.7 1214 78.7
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 0.0e+00 1674.1 1223 76.9
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 0.0e+00 1673.3 1215 76.6
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 0.0e+00 1666.7 1222 74.5
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1659.4 1193 78.5
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 0.0e+00 1650.2 1222 76.7
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1649.8 1214 77.7
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 0.0e+00 1647.9 1215 76.2
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 0.0e+00 1647.5 1236 76.1
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 0.0e+00 1646.7 1217 73.8
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1646.3 1216 77.1
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 0.0e+00 1645.9 1215 76.1
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 0.0e+00 1637.5 1214 74.5
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 0.0e+00 1628.2 1213 75.8
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1627.8 1214 75.7
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1624.4 1212 73.7
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 0.0e+00 1622.1 1218 72.7
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 0.0e+00 1620.9 1155 79.5
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 0.0e+00 1620.5 1220 73.0
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1614.7 1217 74.0
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 0.0e+00 1614.4 1215 75.1
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1608.6 1219 72.8
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 0.0e+00 1605.5 1172 75.2
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 0.0e+00 1598.6 1235 72.5
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 0.0e+00 1594.3 1221 73.5
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 0.0e+00 1592.4 1246 73.4
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1590.9 1217 73.5
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 0.0e+00 1584.3 1227 71.5
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1582.4 1201 73.0
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1570.1 1180 73.9
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1569.7 1219 72.8
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1568.1 1222 71.6
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 0.0e+00 1565.4 1214 70.6
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 0.0e+00 1562.4 1235 72.7
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 0.0e+00 1552.7 1220 70.6
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1551.2 1245 68.9
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 0.0e+00 1549.3 1387 66.8
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1532.3 1098 78.4
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1531.2 1209 70.7
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 0.0e+00 1525.4 1215 70.2
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 0.0e+00 1524.6 1215 68.4
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 0.0e+00 1515.0 1214 70.7
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1512.7 1214 68.3
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1512.7 1214 68.3
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 0.0e+00 1509.6 1194 71.6
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 0.0e+00 1509.6 1233 67.2
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 0.0e+00 1505.0 1215 70.6
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 0.0e+00 1505.0 1190 71.1
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 0.0e+00 1502.3 1218 69.3
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 0.0e+00 1501.9 1215 68.8
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1500.0 1214 72.2
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1493.4 1215 67.2
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 0.0e+00 1490.7 1195 69.3
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1489.6 1215 69.2
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1488.8 1219 69.0
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 0.0e+00 1486.5 1225 68.7
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 0.0e+00 1482.6 1222 68.8
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1480.3 1218 68.9
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 0.0e+00 1479.9 1211 70.9
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1473.8 1300 65.7
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1442.2 1206 67.7
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1413.7 1197 66.8
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1399.0 1209 64.7
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 0.0e+00 1397.5 1196 68.7
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 0.0e+00 1376.3 948 79.2
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 0.0e+00 1367.8 1234 63.4
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 0.0e+00 1361.3 913 76.8
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 0.0e+00 1361.3 1213 64.1
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 0.0e+00 1353.2 1234 63.6
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1333.5 1259 61.0
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1290.8 889 77.8
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 0.0e+00 1197.6 857 75.1
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1184.5 827 78.2
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 0.0e+00 1154.8 988 71.5
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 0.0e+00 1140.9 1242 54.3
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 0.0e+00 1090.1 771 77.8
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 8.3e-312 1073.5 806 70.5
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 1.2e-305 1053.5 915 70.3
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 2.6e-279 966.1 665 75.9
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 8.0e-273 944.5 822 67.5
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 7.7e-268 927.9 937 62.0
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 6.4e-206 722.2 606 66.8
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 2.9e-190 670.2 550 63.8
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 2.4e-176 624.0 967 41.6
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 5.2e-171 606.3 411 75.2
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 5.9e-159 566.2 377 77.5
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 5.7e-154 549.7 294 90.8
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 2.3e-142 511.1 441 66.0
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 1.7e-126 458.4 309 76.1
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 2.3e-123 448.0 364 75.8
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 3.4e-122 444.1 1189 32.6
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 1.2e-119 435.6 846 38.5
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 3.6e-116 424.1 237 85.7
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 3.0e-102 377.9 573 43.8
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 8.1e-100 369.8 313 64.5
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 1.0e-94 352.8 1288 28.0
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 6.9e-91 340.1 212 80.2
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 1.7e-89 335.5 181 89.0
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 1.7e-89 335.5 181 89.0
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 3.1e-83 314.7 171 87.1
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.1e-79 302.0 215 71.2
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 3.5e-79 301.2 215 71.2
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 3.2e-72 278.1 352 52.8
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 1.4e-70 272.7 224 64.7
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 2.3e-70 271.9 362 58.8
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 3.0e-70 271.6 379 53.3
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 6.9e-67 260.4 408 44.4
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 1.1e-61 243.0 136 91.9
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.9e-57 228.4 164 71.3
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 5.0e-57 227.6 216 68.1
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 8.5e-57 226.9 335 47.8
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.1e-55 222.2 154 74.0
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 1.3e-49 203.0 331 48.3
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 2.9e-49 201.8 322 41.3
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 3.2e-48 198.4 231 58.9
Psat7g256680 Pisum sativum HOM05D003924 ORTHO05D005216 7.2e-48 197.2 215 58.6
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 8.8e-46 190.3 138 68.1
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 3.0e-38 165.2 96 84.4
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 1.4e-35 156.4 83 91.6
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 3.1e-35 155.2 120 63.3
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.0e-33 150.2 96 79.2
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 3.8e-33 148.3 188 51.1
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 2.1e-31 142.5 107 76.6
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 3.6e-31 141.7 77 87.0
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 2.3e-30 139.0 134 58.2
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 1.2e-26 126.7 72 87.5
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 2.0e-26 125.9 108 70.4
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 4.6e-26 124.8 86 67.4
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 5.9e-26 124.4 78 75.6
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 1.2e-21 110.2 65 86.2
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 3.4e-21 108.6 112 60.7
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 1.0e-17 97.1 94 64.9
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 1.7e-17 96.3 83 56.6
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 3.0e-17 95.5 58 82.8
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 5.0e-17 94.7 68 66.2
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 1.9e-16 92.8 57 73.7
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 2.5e-16 92.4 56 73.2
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 1.2e-15 90.1 119 47.9
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 1.2e-15 90.1 77 55.8
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 1.4e-14 86.7 56 71.4
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 1.2e-10 73.6 46 80.4
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 5.1e-09 68.2 113 41.6
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 9.5e-08 63.9 47 53.2
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 9.5e-08 63.9 45 62.2
TPR.G23196 Trifolium pratense HOM05D000141 ORTHO05D001311 8.1e-07 60.8 33 87.9
C07p01420 Brassica napus HOM05D000209 ORTHO05D000129 1.1e-06 60.5 145 34.5


User provided reference genes

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