Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C624T4 Lonicera japonica HOM05D002351 ORTHO05D002501 5.8e-25 116.7 57 100.0
Lj5C794T6 Lonicera japonica HOM05D002351 ORTHO05D002501 5.8e-25 116.7 57 100.0
Lj2C1151G12 Lonicera japonica HOM05D002351 ORTHO05D002501 1.6e-19 98.6 93 61.3
FAN17G1904 Fragaria x ananassa HOM05D002351 ORTHO05D002501 1.4e-18 95.5 56 80.4
ECA232G4398 Erigeron canadensis HOM05D002351 ORTHO05D002501 4.5e-17 90.5 79 64.6
HanXRQChr09g0267651 Helianthus annuus HOM05D002351 ORTHO05D002501 5.9e-17 90.1 79 63.3
Glyma.07G134400 Glycine max HOM05D002351 ORTHO05D002501 1.7e-16 88.6 78 61.5
HanXRQChr05g0150911 Helianthus annuus HOM05D002351 ORTHO05D002501 2.2e-16 88.2 78 62.8
MBI07_g16244_MAGBIO Magnolia biondii HOM05D002351 ORTHO05D002501 2.2e-16 88.2 78 61.5
Dinv34625 Davidia involucrata HOM05D002351 ORTHO05D002501 2.9e-16 87.8 79 59.5
Nn1g09221 Nelumbo nucifera HOM05D002351 ORTHO05D002501 2.9e-16 87.8 79 57.0
Rhsim06G0149800 Rhododendron simsii HOM05D002351 ORTHO05D002501 2.9e-16 87.8 79 59.5
ATR0736G013 Amborella trichopoda HOM05D002351 ORTHO05D002501 3.8e-16 87.4 79 59.5
arahy.Tifrunner.gnm1.ann1.PE31ZG Arachis hypogaea HOM05D002351 ORTHO05D002501 3.8e-16 87.4 79 59.5
ECA233G2014 Erigeron canadensis HOM05D002351 ORTHO05D002501 3.8e-16 87.4 79 62.0
Glyma.18G183900 Glycine max HOM05D002351 ORTHO05D002501 3.8e-16 87.4 78 60.3
Aqoxy5G00246 Aquilegia oxysepala HOM05D002351 ORTHO05D002501 5.0e-16 87.0 80 58.8
ClCG02G016050 Citrullus lanatus HOM05D002351 ORTHO05D002501 5.0e-16 87.0 79 59.5
MELO3C004305.2 Cucumis melo HOM05D002351 ORTHO05D002501 5.0e-16 87.0 79 59.5
CsaV3_2G004930 Cucumis sativus L. HOM05D002351 ORTHO05D002501 5.0e-16 87.0 79 59.5
Potri.015G048200 Populus trichocarpa HOM05D002351 ORTHO05D002501 5.0e-16 87.0 78 59.0
arahy.Tifrunner.gnm1.ann1.CP8RLS Arachis hypogaea HOM05D002351 ORTHO05D002501 6.5e-16 86.7 79 58.2
MELO3C006424.2 Cucumis melo HOM05D002351 ORTHO05D002501 6.5e-16 86.7 79 58.2
FvH4_4g03640 Fragaria vesca HOM05D002351 ORTHO05D002501 8.5e-16 86.3 79 59.5
MD16G1219100 Malus domestica HOM05D002351 ORTHO05D002501 1.1e-15 85.9 79 58.2
Nitab4.5_0001855g0080 Nicotiana tabacum HOM05D002351 ORTHO05D002501 1.1e-15 85.9 55 69.1
CiPaw.04G186600 Carya illinoinensis HOM05D002351 ORTHO05D002501 1.4e-15 85.5 78 59.0
Cpa.g.sc44.58 Carica papaya HOM05D002351 ORTHO05D002501 1.9e-15 85.1 78 57.7
ClCG05G004310 Citrullus lanatus HOM05D002351 ORTHO05D002501 1.9e-15 85.1 78 59.0
Lalb_Chr01g0019661 Lupinus albus HOM05D002351 ORTHO05D002501 1.9e-15 85.1 78 60.3
TAR636G1082 Trochodendron aralioides HOM05D002351 ORTHO05D002501 1.9e-15 85.1 78 60.3
arahy.Tifrunner.gnm1.ann1.6757N5 Arachis hypogaea HOM05D002351 ORTHO05D002501 2.5e-15 84.7 79 58.2
CSS0041145 Camellia sinensis var. sinensis HOM05D002351 ORTHO05D002501 2.5e-15 84.7 79 58.2
Lalb_Chr25g0289971 Lupinus albus HOM05D002351 ORTHO05D002501 2.5e-15 84.7 78 59.0
Prupe.8G223800 Prunus persica HOM05D002351 ORTHO05D002501 2.5e-15 84.7 78 60.3
GSVIVG01027813001 Vitis vinifera HOM05D002351 ORTHO05D002501 2.5e-15 84.7 78 57.7
Hund02915 Selenicereus undatus HOM05D002351 ORTHO05D002501 3.2e-15 84.3 79 59.5
CANSAT78G1053 Cannabis sativa HOM05D002351 ORTHO05D002501 4.2e-15 84.0 79 55.7
CsaV3_3G012090 Cucumis sativus L. HOM05D002351 ORTHO05D002501 4.2e-15 84.0 79 55.7
Ciclev10019645m.g Citrus clementina HOM05D002351 ORTHO05D002501 5.5e-15 83.6 78 57.7
SEGI_01744 Sequoiadendron giganteum HOM05D002351 ORTHO05D002501 5.5e-15 83.6 78 53.8
Atru.chr5.1687 Acer truncatum HOM05D002351 ORTHO05D002501 7.2e-15 83.2 78 59.0
arahy.Tifrunner.gnm1.ann1.NU732K Arachis hypogaea HOM05D002351 ORTHO05D002501 7.2e-15 83.2 78 57.7
MSTRG.17490 Avicennia marina HOM05D002351 ORTHO05D002501 7.2e-15 83.2 78 55.1
Potri.012G064100 Populus trichocarpa HOM05D002351 ORTHO05D002501 7.2e-15 83.2 78 56.4
Sabra12G0045800 Salix brachista HOM05D002351 ORTHO05D002501 7.2e-15 83.2 78 56.4
Sed0025164 Sechium edule HOM05D002351 ORTHO05D002501 7.2e-15 83.2 79 55.7
Zm00001eb173350 Zea mays HOM05D002351 ORTHO05D002501 7.2e-15 83.2 78 56.4
Zm00001eb261550 Zea mays HOM05D002351 ORTHO05D002501 7.2e-15 83.2 78 56.4
Rhsim01G0264000 Rhododendron simsii HOM05D002351 ORTHO05D002501 9.3e-15 82.8 79 58.2
Thecc.04G255300 Theobroma cacao HOM05D002351 ORTHO05D002501 9.3e-15 82.8 78 56.4
CDE04G1499 Ceratophyllum demersum HOM05D002351 ORTHO05D002501 1.2e-14 82.4 76 56.6
Lj5g0011136 Lotus japonicus HOM05D002351 ORTHO05D002501 1.2e-14 82.4 78 55.1
MD05G1197300 Malus domestica HOM05D002351 ORTHO05D002501 1.2e-14 82.4 78 59.0
MD10G1184000 Malus domestica HOM05D002351 ORTHO05D002501 1.2e-14 82.4 78 59.0
TAR365G0593 Trochodendron aralioides HOM05D002351 ORTHO05D002501 1.2e-14 82.4 76 57.9
FvH4_2g21480 Fragaria vesca HOM05D002351 ORTHO05D002501 1.6e-14 82.0 78 59.0
FAN24G0740 Fragaria x ananassa HOM05D002351 ORTHO05D002501 1.6e-14 82.0 78 59.0
Lsat_1_v5_gn_4_125921 Lactuca sativa HOM05D002351 ORTHO05D002501 1.6e-14 82.0 77 61.0
Phvul.006G069800 Phaseolus vulgaris HOM05D002351 ORTHO05D002501 1.6e-14 82.0 78 56.4
RcHm_v2.0_Chr6g0288131 Rosa chinensis HOM05D002351 ORTHO05D002501 1.6e-14 82.0 78 59.0
PGSC0003DMG400020072 Solanum tuberosum HOM05D002351 ORTHO05D002501 1.6e-14 82.0 80 55.0
SGA_v2.0_scaffold510G52613 Striga asiatica HOM05D002351 ORTHO05D002501 1.6e-14 82.0 79 53.2
EL10Ac5g10400 Beta vulgaris HOM05D002351 ORTHO05D002501 2.1e-14 81.6 77 55.8
Ciclev10004803m.g Citrus clementina HOM05D002351 ORTHO05D002501 2.1e-14 81.6 78 55.1
Prupe.1G039500 Prunus persica HOM05D002351 ORTHO05D002501 2.1e-14 81.6 79 57.0
QL06p018004 Quercus lobata HOM05D002351 ORTHO05D002501 2.1e-14 81.6 77 53.2
arahy.Tifrunner.gnm1.ann1.TV98JP Arachis hypogaea HOM05D002351 ORTHO05D002501 2.7e-14 81.3 78 56.4
Haze_11380 Corylus avellana HOM05D002351 ORTHO05D002501 2.7e-14 81.3 79 55.7
Gohir.A10G111100 Gossypium hirsutum HOM05D002351 ORTHO05D002501 2.7e-14 81.3 78 56.4
Ah.11g049740 Amaranthus hybridus HOM05D002351 ORTHO05D002501 3.6e-14 80.9 76 55.3
EL10Ac4g07698 Beta vulgaris HOM05D002351 ORTHO05D002501 3.6e-14 80.9 77 55.8
AUR62011871 Chenopodium quinoa HOM05D002351 ORTHO05D002501 3.6e-14 80.9 66 59.1
AUR62024715 Chenopodium quinoa HOM05D002351 ORTHO05D002501 3.6e-14 80.9 77 53.2
Duzib151G0731 Durio zibethinus HOM05D002351 ORTHO05D002501 3.6e-14 80.9 78 55.1
FAN20G1607 Fragaria x ananassa HOM05D002351 ORTHO05D002501 3.6e-14 80.9 78 57.7
Lj1g0017354 Lotus japonicus HOM05D002351 ORTHO05D002501 3.6e-14 80.9 78 57.7
RcHm_v2.0_Chr4g0393021 Rosa chinensis HOM05D002351 ORTHO05D002501 3.6e-14 80.9 79 57.0
Atru.chr4.2059 Acer truncatum HOM05D002351 ORTHO05D002501 4.6e-14 80.5 78 51.3
Actinidia25787 Actinidia chinensis HOM05D002351 ORTHO05D002501 4.6e-14 80.5 78 56.4
CANSAT01G1751 Cannabis sativa HOM05D002351 ORTHO05D002501 4.6e-14 80.5 76 56.6
COL.COLO4_15877 Corchorus olitorius HOM05D002351 ORTHO05D002501 4.6e-14 80.5 78 53.8
FAN27G1893 Fragaria x ananassa HOM05D002351 ORTHO05D002501 4.6e-14 80.5 78 56.4
Os08g0127700 Oryza sativa ssp. japonica HOM05D002351 ORTHO05D002501 4.6e-14 80.5 78 53.8
Peaxi162Scf00013g01114 Petunia axillaris HOM05D002351 ORTHO05D002501 4.6e-14 80.5 78 55.1
Cc01_g18360 Coffea canephora HOM05D002351 ORTHO05D002501 6.1e-14 80.1 76 53.9
Gohir.D10G157000 Gossypium hirsutum HOM05D002351 ORTHO05D002501 6.1e-14 80.1 78 55.1
Gorai.011G174300 Gossypium raimondii HOM05D002351 ORTHO05D002501 6.1e-14 80.1 78 55.1
Nitab4.5_0005993g0020 Nicotiana tabacum HOM05D002351 ORTHO05D002501 6.1e-14 80.1 78 55.1
TWI12G0014 Tripterygium wilfordii HOM05D002351 ORTHO05D002501 6.1e-14 80.1 78 56.4
HPP92_020821 Vanilla planifolia HOM05D002351 ORTHO05D002501 6.1e-14 80.1 78 53.8
Aa31LG1G9080 Aethionema arabicum HOM05D002351 ORTHO05D002501 7.9e-14 79.7 76 56.6
Dinv22408 Davidia involucrata HOM05D002351 ORTHO05D002501 7.9e-14 79.7 78 51.3
QL06p017953 Quercus lobata HOM05D002351 ORTHO05D002501 7.9e-14 79.7 77 51.9
Solyc06g083890.4 Solanum lycopersicum HOM05D002351 ORTHO05D002501 7.9e-14 79.7 78 55.1
Sopen06g035290 Solanum pennellii HOM05D002351 ORTHO05D002501 7.9e-14 79.7 78 55.1
COL.COLO4_11468 Corchorus olitorius HOM05D002351 ORTHO05D002501 1.0e-13 79.3 74 52.7
FAN15G0951 Fragaria x ananassa HOM05D002351 ORTHO05D002501 1.0e-13 79.3 78 56.4
Oeu027307.1 Olea europaea HOM05D002351 ORTHO05D002501 1.0e-13 79.3 79 53.2
Sc17g0000650 Simmondsia chinensis HOM05D002351 ORTHO05D002501 1.0e-13 79.3 78 55.1
CAN.G771.27 Capsicum annuum HOM05D002351 ORTHO05D002501 1.4e-13 79.0 78 53.8
Duzib212G0548 Durio zibethinus HOM05D002351 ORTHO05D002501 1.4e-13 79.0 77 54.5
Nitab4.5_0006658g0020 Nicotiana tabacum HOM05D002351 ORTHO05D002501 1.4e-13 79.0 78 53.8
AL7G13900 Arabidopsis lyrata HOM05D002351 ORTHO05D002501 1.8e-13 78.6 76 55.3
PGR102G2193 Punica granatum HOM05D002351 ORTHO05D002501 1.8e-13 78.6 78 52.6
Thecc.09G105100 Theobroma cacao HOM05D002351 ORTHO05D002501 1.8e-13 78.6 69 58.0
Eucgr.B01555 Eucalyptus grandis HOM05D002351 ORTHO05D002501 2.3e-13 78.2 76 56.6
Solyc09g072570.3 Solanum lycopersicum HOM05D002351 ORTHO05D002501 2.3e-13 78.2 78 52.6
Sopen09g028380 Solanum pennellii HOM05D002351 ORTHO05D002501 2.3e-13 78.2 78 52.6
Migut.N02202 Erythranthe guttata HOM05D002351 ORTHO05D002501 3.0e-13 77.8 78 53.8
Eucgr.B02550 Eucalyptus grandis HOM05D002351 ORTHO05D002501 3.0e-13 77.8 76 55.3
Manes.13G034000 Manihot esculenta HOM05D002351 ORTHO05D002501 3.0e-13 77.8 78 51.3
THA.LOC104801152 Tarenaya hassleriana HOM05D002351 ORTHO05D002501 3.0e-13 77.8 76 53.9
unitig_746.g26600 Utricularia gibba HOM05D002351 ORTHO05D002501 3.9e-13 77.4 77 53.2
PGSC0003DMG400010324 Solanum tuberosum HOM05D002351 ORTHO05D002501 5.1e-13 77.0 78 51.3
TWI18G0783 Tripterygium wilfordii HOM05D002351 ORTHO05D002501 5.1e-13 77.0 78 52.6
Manes.12G032300 Manihot esculenta HOM05D002351 ORTHO05D002501 6.7e-13 76.6 78 51.3
CARHR057480 Cardamine hirsuta HOM05D002351 ORTHO05D002501 8.8e-13 76.3 76 53.9
SalBow6G6946 Salvia bowleyana HOM05D002351 ORTHO05D002501 8.8e-13 76.3 78 51.3
unitig_899.g15390 Utricularia gibba HOM05D002351 ORTHO05D002501 1.1e-12 75.9 76 51.3
DCAR_018482 Daucus carota HOM05D002351 ORTHO05D002501 1.5e-12 75.5 76 53.9
PSO210G5288 Papaver somniferum HOM05D002351 ORTHO05D002501 1.5e-12 75.5 78 52.6
PSO210G6182 Papaver somniferum HOM05D002351 ORTHO05D002501 1.5e-12 75.5 78 52.6
PSO832G3759 Papaver somniferum HOM05D002351 ORTHO05D002501 1.5e-12 75.5 78 52.6
Gohir.D02G045600 Gossypium hirsutum HOM05D002351 ORTHO05D002501 1.9e-12 75.1 78 51.3
Mapoly0019s0005 Marchantia polymorpha HOM05D002351 ORTHO05D002501 1.9e-12 75.1 76 53.9
AT1G65660 Arabidopsis thaliana HOM05D002351 ORTHO05D002501 2.5e-12 74.7 76 52.6
Carub.0002s1150 Capsella rubella HOM05D002351 ORTHO05D002501 2.5e-12 74.7 76 52.6
Gohir.A02G039500 Gossypium hirsutum HOM05D002351 ORTHO05D002501 2.5e-12 74.7 78 51.3
Sp7g18290 Schrenkiella parvula HOM05D002351 ORTHO05D002501 2.5e-12 74.7 76 52.6
Thhalv10007322m.g Eutrema salsugineum HOM05D002351 ORTHO05D002501 3.3e-12 74.3 76 51.3
Medtr7g096940 Medicago truncatula HOM05D002351 ORTHO05D002501 3.3e-12 74.3 75 53.3
Pp3c19_14100 Physcomitrium patens HOM05D002351 ORTHO05D002501 3.3e-12 74.3 75 52.0
BcaC07g36937 Brassica carinata HOM05D002351 ORTHO05D002501 4.3e-12 73.9 76 51.3
A01p31760 Brassica napus HOM05D002351 ORTHO05D002501 4.3e-12 73.9 78 51.3
BolC1t04020H Brassica oleracea HOM05D002351 ORTHO05D002501 4.3e-12 73.9 78 51.3
BolC8t46880H Brassica oleracea HOM05D002351 ORTHO05D002501 4.3e-12 73.9 76 51.3
BraA01t03301Z Brassica rapa HOM05D002351 ORTHO05D002501 4.3e-12 73.9 78 51.3
BraA08t35617Z Brassica rapa HOM05D002351 ORTHO05D002501 4.3e-12 73.9 76 51.3
Migut.L00660 Erythranthe guttata HOM05D002351 ORTHO05D002501 4.3e-12 73.9 73 53.4
AL2G22710 Arabidopsis lyrata HOM05D002351 ORTHO05D002501 5.7e-12 73.6 76 51.3
BcaC09g49274 Brassica carinata HOM05D002351 ORTHO05D002501 5.7e-12 73.6 78 50.0
C01p40650 Brassica napus HOM05D002351 ORTHO05D002501 5.7e-12 73.6 78 50.0
Thhalv10024881m.g Eutrema salsugineum HOM05D002351 ORTHO05D002501 5.7e-12 73.6 76 50.0
Gorai.005G050300 Gossypium raimondii HOM05D002351 ORTHO05D002501 5.7e-12 73.6 78 50.0
BcaC05g24491 Brassica carinata HOM05D002351 ORTHO05D002501 7.4e-12 73.2 76 50.0
C05p02240 Brassica napus HOM05D002351 ORTHO05D002501 7.4e-12 73.2 76 50.0
BraA10t42511Z Brassica rapa HOM05D002351 ORTHO05D002501 7.4e-12 73.2 76 50.0
PSO676G0018 Papaver somniferum HOM05D002351 ORTHO05D002501 9.7e-12 72.8 77 50.6
AT4G37120 Arabidopsis thaliana HOM05D002351 ORTHO05D002501 1.3e-11 72.4 75 50.7
C08p00820 Brassica napus HOM05D002351 ORTHO05D002501 1.3e-11 72.4 76 50.0
TPR.G4754 Trifolium pratense HOM05D002351 ORTHO05D002501 1.3e-11 72.4 78 51.3
Carub.0003s2349 Capsella rubella HOM05D002351 ORTHO05D002501 3.7e-11 70.9 77 50.6
BcaB04g20459 Brassica carinata HOM05D002351 ORTHO05D002501 4.8e-11 70.5 78 48.7
Carub.0137s0002 Capsella rubella HOM05D002351 ORTHO05D002501 4.8e-11 70.5 77 50.6
Haze_24629 Corylus avellana HOM05D002351 ORTHO05D002501 1.8e-10 68.6 100 42.0
SMO367G0861 Selaginella moellendorffii HOM05D002351 ORTHO05D002501 2.4e-10 68.2 76 48.7
AagrBONN_evm.TU.Sc2ySwM_117.1446 Anthoceros agrestis HOM05D002351 ORTHO05D002501 4.1e-10 67.4 75 49.3
CBR_g54768 Chara braunii HOM05D002351 ORTHO05D002501 4.1e-10 67.4 79 44.3
CARHR215740 Cardamine hirsuta HOM05D002351 ORTHO05D002501 6.9e-10 66.6 78 46.2
BcaC01g01966 Brassica carinata HOM05D002351 ORTHO05D002501 9.1e-10 66.2 76 46.1
C03p70030 Brassica napus HOM05D002351 ORTHO05D002501 9.1e-10 66.2 76 46.1
BolC3t19262H Brassica oleracea HOM05D002351 ORTHO05D002501 9.1e-10 66.2 76 46.1
MD13G1214100 Malus domestica HOM05D002351 ORTHO05D002501 9.1e-10 66.2 79 46.8
Medtr1g076120 Medicago truncatula HOM05D002351 ORTHO05D002501 2.0e-09 65.1 55 61.8
QL02p014536 Quercus lobata HOM05D002351 ORTHO05D002501 7.7e-09 63.2 77 45.5
Thhalv10022337m.g Eutrema salsugineum HOM05D002351 ORTHO05D002501 3.8e-08 60.8 78 43.6
Hund09602 Selenicereus undatus HOM05D002351 ORTHO05D002501 5.0e-08 60.5 66 53.0
AagrBONN_evm.TU.Sc2ySwM_368.1943 Anthoceros agrestis HOM05D002351 ORTHO05D002501 1.4e-07 58.9 71 45.1
SEGI_03606 Sequoiadendron giganteum HOM05D002351 ORTHO05D002501 5.5e-07 57.0 27 92.6
Aa31LG8G9790 Aethionema arabicum HOM05D002351 ORTHO05D002501 1.6e-06 55.5 76 42.1
Migut.L00757 Erythranthe guttata HOM05D002351 ORTHO05D002501 1.6e-06 55.5 40 67.5
ECA247G2288 Erigeron canadensis HOM05D002351 ORTHO05D002501 4.7e-06 53.9 30 86.7
AUR62027753 Chenopodium quinoa HOM05D002351 ORTHO05D002501 6.1e-06 53.5 55 47.3


User provided reference genes

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