Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C266T4 Lonicera japonica HOM05D007027 ORTHO05D008765 1.6e-202 709.1 352 100.0
Nitab4.5_0000787g0210 Nicotiana tabacum HOM05D007027 ORTHO05D008765 5.2e-140 501.5 385 68.8
PGSC0003DMG400024892 Solanum tuberosum HOM05D007027 ORTHO05D008765 8.9e-140 500.7 387 68.5
Nitab4.5_0004106g0030 Nicotiana tabacum HOM05D007027 ORTHO05D008765 2.2e-138 496.1 386 68.7
CSS0028981 Camellia sinensis var. sinensis HOM05D007027 ORTHO05D008765 4.9e-138 495.0 386 66.8
Solyc01g103560.3 Solanum lycopersicum HOM05D007027 ORTHO05D008765 8.3e-138 494.2 387 68.0
Sopen01g045910 Solanum pennellii HOM05D007027 ORTHO05D008765 1.9e-137 493.0 387 67.7
CAN.G855.3 Capsicum annuum HOM05D007027 ORTHO05D008765 6.0e-136 488.0 386 66.6
GSVIVG01023249001 Vitis vinifera HOM05D007027 ORTHO05D008765 3.0e-135 485.7 381 66.4
TAR381G1092 Trochodendron aralioides HOM05D007027 ORTHO05D008765 8.6e-135 484.2 360 70.3
HanXRQChr09g0249131 Helianthus annuus HOM05D007027 ORTHO05D008765 1.5e-134 483.4 377 69.0
THA.LOC104816809 Tarenaya hassleriana HOM05D007027 ORTHO05D008765 1.5e-134 483.4 354 68.4
Cc02_g23170 Coffea canephora HOM05D007027 ORTHO05D008765 1.9e-134 483.0 380 67.6
Duzib132G0056 Durio zibethinus HOM05D007027 ORTHO05D008765 1.9e-134 483.0 369 69.6
MD15G1435400 Malus domestica HOM05D007027 ORTHO05D008765 2.5e-134 482.6 372 68.3
Manes.07G024000 Manihot esculenta HOM05D007027 ORTHO05D008765 4.3e-134 481.9 370 68.6
MD08G1241400 Malus domestica HOM05D007027 ORTHO05D008765 9.5e-134 480.7 372 67.2
Cfa004487 Carpinus fangiana HOM05D007027 ORTHO05D008765 2.1e-133 479.6 370 67.8
FvH4_3g33250 Fragaria vesca HOM05D007027 ORTHO05D008765 1.4e-132 476.9 357 69.2
Gohir.D01G174800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 5.2e-132 474.9 347 70.3
Dinv07482 Davidia involucrata HOM05D007027 ORTHO05D008765 8.9e-132 474.2 387 65.9
CiPaw.05G004800 Carya illinoinensis HOM05D007027 ORTHO05D008765 1.2e-131 473.8 370 68.1
FAN25G1584 Fragaria x ananassa HOM05D007027 ORTHO05D008765 1.2e-131 473.8 357 68.3
CANSAT54G3047 Cannabis sativa HOM05D007027 ORTHO05D008765 1.5e-131 473.4 367 67.8
CsaV3_5G029790 Cucumis sativus L. HOM05D007027 ORTHO05D008765 1.5e-131 473.4 342 70.8
Gorai.002G216900 Gossypium raimondii HOM05D007027 ORTHO05D008765 2.6e-131 472.6 347 70.3
RcHm_v2.0_Chr5g0060601 Rosa chinensis HOM05D007027 ORTHO05D008765 4.4e-131 471.9 333 71.2
CiPaw.06G173600 Carya illinoinensis HOM05D007027 ORTHO05D008765 3.7e-130 468.8 368 66.3
MELO3C011820.2 Cucumis melo HOM05D007027 ORTHO05D008765 3.7e-130 468.8 359 67.4
QL02p100436 Quercus lobata HOM05D007027 ORTHO05D008765 3.7e-130 468.8 327 72.5
FAN16G3401 Fragaria x ananassa HOM05D007027 ORTHO05D008765 6.4e-130 468.0 357 67.5
ECA233G3768 Erigeron canadensis HOM05D007027 ORTHO05D008765 1.1e-129 467.2 357 69.7
SGA_v2.0_scaffold304G47919 Striga asiatica HOM05D007027 ORTHO05D008765 1.1e-129 467.2 395 64.8
Thhalv10007981m.g Eutrema salsugineum HOM05D007027 ORTHO05D008765 1.4e-129 466.8 377 64.7
Oeu064602.3 Olea europaea HOM05D007027 ORTHO05D008765 1.4e-129 466.8 425 61.2
DCAR_006671 Daucus carota HOM05D007027 ORTHO05D008765 1.9e-129 466.5 384 64.1
Migut.B00775 Erythranthe guttata HOM05D007027 ORTHO05D008765 4.1e-129 465.3 359 68.2
Rhsim11G0122600 Rhododendron simsii HOM05D007027 ORTHO05D008765 1.2e-128 463.8 398 63.6
Gohir.A01G183800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 1.6e-128 463.4 361 67.6
Nn5g27423 Nelumbo nucifera HOM05D007027 ORTHO05D008765 2.7e-128 462.6 360 68.3
Cpa.g.sc113.45 Carica papaya HOM05D007027 ORTHO05D008765 6.0e-128 461.5 345 68.4
FAN11G0675 Fragaria x ananassa HOM05D007027 ORTHO05D008765 2.3e-127 459.5 393 62.8
Atru.chr6.497 Acer truncatum HOM05D007027 ORTHO05D008765 2.1e-125 453.0 360 67.5
Actinidia00176 Actinidia chinensis HOM05D007027 ORTHO05D008765 2.8e-125 452.6 349 68.5
Aqoxy3G00475 Aquilegia oxysepala HOM05D007027 ORTHO05D008765 4.7e-125 451.8 362 65.7
BcaC05g24848 Brassica carinata HOM05D007027 ORTHO05D008765 8.1e-125 451.1 359 65.5
Ca_00043_v3 Cicer arietinum L. HOM05D007027 ORTHO05D008765 1.4e-124 450.3 346 68.5
PGR142G1179 Punica granatum HOM05D007027 ORTHO05D008765 5.2e-124 448.4 356 66.9
SalBow7G1849 Salvia bowleyana HOM05D007027 ORTHO05D008765 8.9e-124 447.6 366 65.0
Potri.003G008500 Populus trichocarpa HOM05D007027 ORTHO05D008765 1.2e-123 447.2 356 66.9
C08p49260 Brassica napus HOM05D007027 ORTHO05D008765 3.4e-123 445.7 316 69.0
CARHR009790 Cardamine hirsuta HOM05D007027 ORTHO05D008765 4.4e-123 445.3 383 62.1
Sp1g08410 Schrenkiella parvula HOM05D007027 ORTHO05D008765 4.4e-123 445.3 381 62.5
Glyma.12G167000 Glycine max HOM05D007027 ORTHO05D008765 5.8e-123 444.9 368 64.9
BolC8t52461H Brassica oleracea HOM05D007027 ORTHO05D008765 7.6e-123 444.5 316 68.7
Prupe.1G579000 Prunus persica HOM05D007027 ORTHO05D008765 1.3e-122 443.7 318 72.0
VMungo0540G1081 Vigna mungo HOM05D007027 ORTHO05D008765 1.7e-122 443.4 343 66.2
Glyma.16G003100 Glycine max HOM05D007027 ORTHO05D008765 2.2e-122 443.0 344 67.4
MBI03_g18680_MAGBIO Magnolia biondii HOM05D007027 ORTHO05D008765 2.2e-122 443.0 385 61.6
A09p65310 Brassica napus HOM05D007027 ORTHO05D008765 3.7e-122 442.2 316 69.0
Hund15459 Selenicereus undatus HOM05D007027 ORTHO05D008765 8.4e-122 441.0 354 66.4
AT1G09800 Arabidopsis thaliana HOM05D007027 ORTHO05D008765 1.9e-121 439.9 381 60.9
Carub.0001s0916 Capsella rubella HOM05D007027 ORTHO05D008765 1.9e-121 439.9 361 64.3
Medtr2g005830 Medicago truncatula HOM05D007027 ORTHO05D008765 5.4e-121 438.3 350 66.3
Ciclev10001491m.g Citrus clementina HOM05D007027 ORTHO05D008765 7.1e-121 438.0 350 67.4
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 9.2e-121 437.6 344 66.0
EL10Ac6g14111 Beta vulgaris HOM05D007027 ORTHO05D008765 1.2e-120 437.2 314 71.3
Psat1g222360 Pisum sativum HOM05D007027 ORTHO05D008765 3.5e-120 435.6 358 64.5
arahy.Tifrunner.gnm1.ann1.BAUB6M Arachis hypogaea HOM05D007027 ORTHO05D008765 6.0e-120 434.9 318 68.2
Sabra03G0004200 Salix brachista HOM05D007027 ORTHO05D008765 7.8e-120 434.5 385 61.8
arahy.Tifrunner.gnm1.ann1.3G44QY Arachis hypogaea HOM05D007027 ORTHO05D008765 1.7e-119 433.3 318 68.2
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 2.3e-119 433.0 335 64.8
Os12g0194800 Oryza sativa ssp. japonica HOM05D007027 ORTHO05D008765 6.6e-119 431.4 324 68.5
Thecc.02G018500 Theobroma cacao HOM05D007027 ORTHO05D008765 6.6e-119 431.4 336 69.0
TPR.G2122 Trifolium pratense HOM05D007027 ORTHO05D008765 1.1e-118 430.6 365 62.5
AL1G20380 Arabidopsis lyrata HOM05D007027 ORTHO05D008765 1.9e-118 429.9 412 57.8
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 1.9e-118 429.9 340 65.6
unitig_699.g19848 Utricularia gibba HOM05D007027 ORTHO05D008765 2.5e-118 429.5 358 64.0
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 4.3e-118 428.7 363 61.4
Lalb_Chr20g0123691 Lupinus albus HOM05D007027 ORTHO05D008765 4.3e-118 428.7 346 65.0
ATR1136G089 Amborella trichopoda HOM05D007027 ORTHO05D008765 9.6e-118 427.6 354 64.1
TWI23G0132 Tripterygium wilfordii HOM05D007027 ORTHO05D008765 1.1e-116 424.1 376 60.6
FAN21G1550 Fragaria x ananassa HOM05D007027 ORTHO05D008765 1.4e-116 423.7 357 64.1
Haze_10044 Corylus avellana HOM05D007027 ORTHO05D008765 3.1e-116 422.5 470 52.3
Zm00001eb138750 Zea mays HOM05D007027 ORTHO05D008765 9.9e-115 417.5 325 66.5
COL.COLO4_17723 Corchorus olitorius HOM05D007027 ORTHO05D008765 1.9e-113 413.3 328 65.9
PSO170G1275 Papaver somniferum HOM05D007027 ORTHO05D008765 4.2e-113 412.1 331 63.4
PSO017G0894 Papaver somniferum HOM05D007027 ORTHO05D008765 1.2e-112 410.6 331 62.8
vmacro01711 Vaccinium macrocarpon HOM05D007027 ORTHO05D008765 1.6e-112 410.2 432 55.8
Lj6g0019688 Lotus japonicus HOM05D007027 ORTHO05D008765 1.7e-111 406.8 351 61.8
Lj6g0023928 Lotus japonicus HOM05D007027 ORTHO05D008765 1.7e-111 406.8 351 61.8
BcaC07g41859 Brassica carinata HOM05D007027 ORTHO05D008765 1.9e-110 403.3 318 64.5
Eucgr.I02764 Eucalyptus grandis HOM05D007027 ORTHO05D008765 3.1e-108 396.0 289 69.9
AUR62043952 Chenopodium quinoa HOM05D007027 ORTHO05D008765 5.1e-103 378.6 304 65.5
Pp3c1_13020 Physcomitrium patens HOM05D007027 ORTHO05D008765 2.8e-101 372.9 307 61.6
Sed0027668 Sechium edule HOM05D007027 ORTHO05D008765 1.1e-97 360.9 294 63.9
ClCG11G013270 Citrullus lanatus HOM05D007027 ORTHO05D008765 3.3e-94 349.4 342 58.2
SMO118G0354 Selaginella moellendorffii HOM05D007027 ORTHO05D008765 1.2e-91 340.9 291 59.5
Mapoly0016s0042 Marchantia polymorpha HOM05D007027 ORTHO05D008765 1.3e-90 337.4 316 55.7
Phvul.006G218900 Phaseolus vulgaris HOM05D007027 ORTHO05D008765 1.9e-89 333.6 211 75.8
Sc07g0005100 Simmondsia chinensis HOM05D007027 ORTHO05D008765 2.7e-88 329.7 253 67.2
HPP92_013442 Vanilla planifolia HOM05D007027 ORTHO05D008765 6.5e-82 308.5 272 60.3
HPP92_013441 Vanilla planifolia HOM05D007027 ORTHO05D008765 2.2e-74 283.5 183 72.7
Aa31LG1G5150 Aethionema arabicum HOM05D007027 ORTHO05D008765 5.0e-74 282.3 229 65.1
CBR_g30061 Chara braunii HOM05D007027 ORTHO05D008765 3.0e-71 273.1 452 38.1
CDE05G2927 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 1.5e-67 260.8 191 72.3
Lsat_1_v5_gn_9_120240 Lactuca sativa HOM05D007027 ORTHO05D008765 8.5e-66 255.0 184 73.9
AUR62028254 Chenopodium quinoa HOM05D007027 ORTHO05D008765 3.8e-58 229.6 179 66.5
MCO02G420 Micromonas commoda HOM05D007027 ORTHO05D008765 4.0e-55 219.5 430 36.7
Migut.B00774 Erythranthe guttata HOM05D007027 ORTHO05D008765 1.3e-45 188.0 141 70.2
Peaxi162Scf00011g01224 Petunia axillaris HOM05D007027 ORTHO05D008765 2.7e-43 180.3 224 49.6
RcHm_v2.0_Chr3g0481081 Rosa chinensis HOM05D007027 ORTHO05D008765 3.6e-32 143.3 79 84.8
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 5.0e-26 122.9 301 30.9
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 8.6e-26 122.1 293 30.0
CDE05G0566 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 1.1e-25 121.7 136 50.0
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 1.6e-24 117.9 301 28.6
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 1.4e-20 104.8 294 29.3
PGSC0003DMG400027203 Solanum tuberosum HOM05D006708 ORTHO05D008321 7.0e-20 102.4 296 30.4
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 1.6e-19 101.3 299 27.1
RcHm_v2.0_Chr4g0427681 Rosa chinensis HOM05D006708 ORTHO05D008321 2.7e-19 100.5 294 25.9
Lsat_1_v5_gn_1_39980 Lactuca sativa HOM05D006708 ORTHO05D008321 6.0e-19 99.4 294 27.6
Solyc05g053190.3 Solanum lycopersicum HOM05D006708 ORTHO05D008321 1.3e-18 98.2 296 29.1
CAN.G305.34 Capsicum annuum HOM05D006708 ORTHO05D008321 1.7e-18 97.8 323 28.5
Sopen05g031700 Solanum pennellii HOM05D006708 ORTHO05D008321 1.7e-18 97.8 296 29.1
ATR0796G062 Amborella trichopoda HOM05D006708 ORTHO05D008321 3.9e-18 96.7 294 25.5
SalBow2G2621 Salvia bowleyana HOM05D006708 ORTHO05D008321 3.9e-18 96.7 294 28.2
FAN17G2628 Fragaria x ananassa HOM05D006708 ORTHO05D008321 5.0e-18 96.3 294 26.5
FAN12G1816 Fragaria x ananassa HOM05D006708 ORTHO05D008321 6.6e-18 95.9 298 25.2
FAN07G1828 Fragaria x ananassa HOM05D006708 ORTHO05D008321 8.6e-18 95.5 294 25.9
FvH4_4g21570 Fragaria vesca HOM05D006708 ORTHO05D008321 1.5e-17 94.7 294 25.9
Migut.A01089 Erythranthe guttata HOM05D006708 ORTHO05D008321 2.5e-17 94.0 294 27.6
Glyma.17G041000 Glycine max HOM05D006708 ORTHO05D008321 4.3e-17 93.2 292 27.1
arahy.Tifrunner.gnm1.ann1.H7T0W5 Arachis hypogaea HOM05D006708 ORTHO05D008321 5.6e-17 92.8 294 26.2
arahy.Tifrunner.gnm1.ann1.YU479Z Arachis hypogaea HOM05D006708 ORTHO05D008321 5.6e-17 92.8 294 26.2
TPR.G12542 Trifolium pratense HOM05D006708 ORTHO05D008321 5.6e-17 92.8 303 26.1
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 9.5e-17 92.0 294 25.2
Nitab4.5_0000745g0080 Nicotiana tabacum HOM05D006708 ORTHO05D008321 9.5e-17 92.0 333 26.4
VMungo1215G1693 Vigna mungo HOM05D006708 ORTHO05D008321 9.5e-17 92.0 336 27.7
Ca_21374_v3 Cicer arietinum L. HOM05D006708 ORTHO05D008321 1.2e-16 91.7 319 25.7
Cre09.g405150 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 1.6e-16 91.3 328 27.1
Potri.008G206200 Populus trichocarpa HOM05D006708 ORTHO05D008321 1.6e-16 91.3 292 26.0
Nn3g21927 Nelumbo nucifera HOM05D006708 ORTHO05D008321 3.6e-16 90.1 340 26.8
Hund22645 Selenicereus undatus HOM05D006708 ORTHO05D008321 3.6e-16 90.1 295 27.5
Lalb_Chr18g0047341 Lupinus albus HOM05D006708 ORTHO05D008321 6.2e-16 89.4 299 27.1
AUR62002543 Chenopodium quinoa HOM05D006708 ORTHO05D008321 1.8e-15 87.8 311 26.4
AUR62029962 Chenopodium quinoa HOM05D006708 ORTHO05D008321 2.3e-15 87.4 311 26.4
Cre13.g591501 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 2.3e-15 87.4 306 27.1
Medtr4g123970 Medicago truncatula HOM05D006708 ORTHO05D008321 3.1e-15 87.0 295 25.4
CANSAT64G0974 Cannabis sativa HOM05D006708 ORTHO05D008321 1.2e-14 85.1 296 25.3
CBR_g55386 Chara braunii HOM05D006708 ORTHO05D008321 2.6e-14 84.0 298 28.9
Psat4g021160 Pisum sativum HOM05D006708 ORTHO05D008321 2.6e-14 84.0 298 24.2
EL10Ac3g06239 Beta vulgaris HOM05D006708 ORTHO05D008321 4.4e-14 83.2 294 25.2
Hma1.2p1_0013F.1_g007850 Hydrangea macrophylla HOM05D006708 ORTHO05D008321 9.8e-14 82.0 172 31.4
Nitab4.5_0001769g0170 Nicotiana tabacum HOM05D006708 ORTHO05D008321 2.1e-11 74.3 277 26.4
Sed0006346 Sechium edule HOM05D006708 ORTHO05D008321 2.1e-11 74.3 246 26.8
SEGI_30443 Sequoiadendron giganteum HOM05D007027 ORTHO05D008765 4.6e-11 73.2 51 72.5
Potri.002G061650 Populus trichocarpa HOM05D005655 ORTHO05D007386 3.9e-10 70.1 324 25.0
Sabra02G0049900 Salix brachista HOM05D005655 ORTHO05D007386 6.6e-10 69.3 339 24.5
MELO3C021228.2 Cucumis melo HOM05D006708 ORTHO05D008321 3.3e-09 67.0 193 25.9
Os03g0381100 Oryza sativa ssp. japonica HOM05D005655 ORTHO05D007386 1.6e-08 64.7 278 25.2
MBI05_g00396_MAGBIO Magnolia biondii HOM05D001233 ORTHO05D001233 2.8e-08 63.9 278 25.9
Nn5g28881 Nelumbo nucifera HOM05D005655 ORTHO05D007386 2.8e-08 63.9 306 26.1
Cfa024548 Carpinus fangiana HOM05D005655 ORTHO05D007386 6.2e-08 62.8 290 26.2
Ciclev10001190m.g Citrus clementina HOM05D005655 ORTHO05D007386 6.2e-08 62.8 309 24.6
SEGI_32206 Sequoiadendron giganteum HOM05D006708 ORTHO05D008321 6.2e-08 62.8 96 32.3
unitig_1.g29359 Utricularia gibba HOM05D006708 ORTHO05D008321 1.1e-07 62.0 212 26.4
AUR62034929 Chenopodium quinoa HOM05D005655 ORTHO05D007386 2.3e-07 60.8 315 27.3
AT5G35400 Arabidopsis thaliana HOM05D006401 ORTHO05D007864 6.8e-07 59.3 158 27.8
EL10Ac1g01637 Beta vulgaris HOM05D005655 ORTHO05D007386 8.9e-07 58.9 296 27.4
Carub.0007s3123 Capsella rubella HOM05D006401 ORTHO05D007864 8.9e-07 58.9 158 27.2
Cre02.g086050 Chlamydomonas reinhardtii HOM05D005655 ORTHO05D007386 8.9e-07 58.9 318 22.6
AL7G44200 Arabidopsis lyrata HOM05D006401 ORTHO05D007864 2.6e-06 57.4 158 27.8
Aa31LG6G8320 Aethionema arabicum HOM05D005655 ORTHO05D000003 7.6e-06 55.8 178 27.0
Glyma.10G220000 Glycine max HOM05D005655 ORTHO05D007386 9.9e-06 55.5 346 25.1


User provided reference genes

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