Gene: Pp3c1_13020

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c1_13020
  • Transcript Identifier Pp3c1_13020V3.5
  • Gene Type Coding gene
  • Location Chr01 : 9469418-9473214 : positive

Gene Family Information

  • ID HOM05D007027
  • #Genes/#Species 114/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c1_13020V3.5
  • pacid 32967951
  • alias Phpat.001G051800
  • alias Pp1s86_182V6
  • alias Phypa_131035
  • uniprot A0A2K1L813

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0001522
IEA
GOA Databasepseudouridine synthesis
GO:0001522
IEA
InterPropseudouridine synthesis
GO:0009451
IEA
GOA DatabaseRNA modification
GO:0009451
IEA
InterProRNA modification
GO:0008033
IEA
GOA DatabasetRNA processing
GO:0031119
IBA
GOA DatabasetRNA pseudouridine synthesis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0009982
IBA
IEA
GOA Databasepseudouridine synthase activity
GO:0009982
IEA
InterPropseudouridine synthase activity
GO:0106029
IEA
GOA DatabasetRNA pseudouridine synthase activity
GO:0016853
IEA
GOA Databaseisomerase activity

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001406 Pseudouridine synthase I, TruA
IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain
IPR020103 Pseudouridine synthase, catalytic domain superfamily
IPR020094 Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal
IPR020095 Pseudouridine synthase I, TruA, C-terminal
Mapman id Description
16.5.3.1 RNA processing.RNA modification.pseudouridylation.tRNA pseudouridine synthase (TruA)