Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A120G52 Lonicera japonica HOM05D000629 ORTHO05D000576 1.9e-107 392.5 195 100.0
Dinv13124 Davidia involucrata HOM05D000629 ORTHO05D000576 5.6e-19 98.6 178 34.3
Oeu060596.1 Olea europaea HOM05D000629 ORTHO05D000576 4.0e-17 92.4 161 32.9
AT1G59890 Arabidopsis thaliana HOM05D000629 ORTHO05D000576 2.0e-16 90.1 165 32.7
Sc14g0008500 Simmondsia chinensis HOM05D000629 ORTHO05D000576 3.4e-16 89.4 184 30.4
unitig_746.g26577 Utricularia gibba HOM05D000629 ORTHO05D000576 4.5e-16 89.0 190 30.0
Pp3c8_14940 Physcomitrium patens HOM05D000629 ORTHO05D000576 5.8e-16 88.6 143 31.5
Pp3c24_13770 Physcomitrium patens HOM05D000629 ORTHO05D000576 7.6e-16 88.2 143 30.8
SalBow1G0078 Salvia bowleyana HOM05D000629 ORTHO05D000576 1.3e-15 87.4 154 32.5
BcaC04g22197 Brassica carinata HOM05D000629 ORTHO05D000576 1.7e-15 87.0 148 31.1
AUR62014568 Chenopodium quinoa HOM05D000629 ORTHO05D000576 1.7e-15 87.0 154 31.8
SGA_v2.0_scaffold30G12504 Striga asiatica HOM05D000629 ORTHO05D000576 1.7e-15 87.0 154 33.1
AL2G16860 Arabidopsis lyrata HOM05D000629 ORTHO05D000576 2.2e-15 86.7 164 31.7
MSTRG.23972 Avicennia marina HOM05D000629 ORTHO05D000576 2.2e-15 86.7 154 31.2
CAN.G1128.14 Capsicum annuum HOM05D000629 ORTHO05D000576 2.2e-15 86.7 154 32.5
AUR62039393 Chenopodium quinoa HOM05D000629 ORTHO05D000576 2.2e-15 86.7 154 31.8
Oeu018662.3 Olea europaea HOM05D000629 ORTHO05D000576 2.2e-15 86.7 163 30.7
Thhalv10023225m.g Eutrema salsugineum HOM05D000629 ORTHO05D000576 2.9e-15 86.3 148 29.7
C09p22200 Brassica napus HOM05D000629 ORTHO05D000576 3.8e-15 85.9 148 30.4
BolC9t55134H Brassica oleracea HOM05D000629 ORTHO05D000576 3.8e-15 85.9 148 30.4
Solyc02g067570.3 Solanum lycopersicum HOM05D000629 ORTHO05D000576 3.8e-15 85.9 154 32.5
Sopen02g016700 Solanum pennellii HOM05D000629 ORTHO05D000576 3.8e-15 85.9 154 32.5
A09p17860 Brassica napus HOM05D000629 ORTHO05D000576 4.9e-15 85.5 148 30.4
BraA09t37419Z Brassica rapa HOM05D000629 ORTHO05D000576 4.9e-15 85.5 148 30.4
Migut.K01349 Erythranthe guttata HOM05D000629 ORTHO05D000576 4.9e-15 85.5 154 32.5
SGA_v2.0_scaffold205G41733 Striga asiatica HOM05D000629 ORTHO05D000576 4.9e-15 85.5 152 30.3
Zm00001eb334400 Zea mays HOM05D000629 ORTHO05D000576 4.9e-15 85.5 149 32.2
Ca_26197_v3 Cicer arietinum L. HOM05D000629 ORTHO05D000576 6.4e-15 85.1 157 33.1
Nitab4.5_0001727g0110 Nicotiana tabacum HOM05D000629 ORTHO05D000576 6.4e-15 85.1 154 32.5
Nitab4.5_0003431g0040 Nicotiana tabacum HOM05D000629 ORTHO05D000576 6.4e-15 85.1 154 32.5
Pp3c24_19330 Physcomitrium patens HOM05D000629 ORTHO05D000576 6.4e-15 85.1 159 27.0
BcaB07g31188 Brassica carinata HOM05D000629 ORTHO05D000576 8.4e-15 84.7 148 30.4
SGA_v2.0_scaffold224G42970 Striga asiatica HOM05D000629 ORTHO05D000576 8.4e-15 84.7 154 32.5
unitig_744.g24345 Utricularia gibba HOM05D000629 ORTHO05D000576 1.1e-14 84.3 155 29.0
Carub.0002s0538 Capsella rubella HOM05D000629 ORTHO05D000576 1.4e-14 84.0 164 31.1
Oeu062378.1 Olea europaea HOM05D000629 ORTHO05D000576 1.4e-14 84.0 154 30.5
SGA_v2.0_scaffold135G34805 Striga asiatica HOM05D000629 ORTHO05D000084 1.4e-14 84.0 154 29.9
Cc07_g02780 Coffea canephora HOM05D000629 ORTHO05D000576 1.9e-14 83.6 154 32.5
Lj6C798G9 Lonicera japonica HOM05D000629 ORTHO05D000576 1.9e-14 83.6 154 30.5
MBI15_g13432_MAGBIO Magnolia biondii HOM05D000629 ORTHO05D000576 2.4e-14 83.2 139 30.2
Sp2g04710 Schrenkiella parvula HOM05D000629 ORTHO05D000576 2.4e-14 83.2 148 29.1
RcHm_v2.0_Chr2g0169911 Rosa chinensis HOM05D000629 ORTHO05D000576 3.2e-14 82.8 143 31.5
Ah.02g131710 Amaranthus hybridus HOM05D000629 ORTHO05D000576 4.2e-14 82.4 154 29.2
MSTRG.3203 Avicennia marina HOM05D000629 ORTHO05D000576 4.2e-14 82.4 154 30.5
Aqoxy3G00865 Aquilegia oxysepala HOM05D000629 ORTHO05D000576 5.5e-14 82.0 163 28.2
Migut.M00134 Erythranthe guttata HOM05D000629 ORTHO05D000576 5.5e-14 82.0 154 31.2
Lj2g0007659 Lotus japonicus HOM05D000629 ORTHO05D000576 7.1e-14 81.6 159 32.1
Aa31LG2G10330 Aethionema arabicum HOM05D000629 ORTHO05D000576 9.3e-14 81.3 156 30.1
AL3G10910 Arabidopsis lyrata HOM05D000629 ORTHO05D000576 9.3e-14 81.3 146 30.8
BcaB04g20237 Brassica carinata HOM05D000629 ORTHO05D000576 9.3e-14 81.3 148 28.4
Rhsim08G0164700 Rhododendron simsii HOM05D000629 ORTHO05D000576 9.3e-14 81.3 138 31.9
Zm00001eb126360 Zea mays HOM05D000629 ORTHO05D000576 1.2e-13 80.9 159 32.7
HanXRQChr15g0476041 Helianthus annuus HOM05D000629 ORTHO05D000576 1.6e-13 80.5 156 29.5
BcaC02g10673 Brassica carinata HOM05D000629 ORTHO05D000576 2.1e-13 80.1 148 27.7
BolC4t24149H Brassica oleracea HOM05D000629 ORTHO05D000576 2.1e-13 80.1 148 27.7
Thhalv10019899m.g Eutrema salsugineum HOM05D000629 ORTHO05D000576 2.1e-13 80.1 145 29.7
Lj2g0011859 Lotus japonicus HOM05D000629 ORTHO05D000576 2.1e-13 80.1 159 32.1
CiPaw.11G033700 Carya illinoinensis HOM05D000629 ORTHO05D000576 2.7e-13 79.7 136 30.1
CAN.G206.77 Capsicum annuum HOM05D000541 ORTHO05D000137 3.5e-13 79.3 161 31.7
CARHR075690 Cardamine hirsuta HOM05D000629 ORTHO05D000576 3.5e-13 79.3 183 29.0
Sp3g00760 Schrenkiella parvula HOM05D000629 ORTHO05D000576 3.5e-13 79.3 185 27.0
BcaC09g49452 Brassica carinata HOM05D000629 ORTHO05D000576 4.6e-13 79.0 148 28.4
A01p28910 Brassica napus HOM05D000629 ORTHO05D000576 4.6e-13 79.0 148 28.4
C01p36580 Brassica napus HOM05D000629 ORTHO05D000576 4.6e-13 79.0 148 28.4
BolC1t03619H Brassica oleracea HOM05D000629 ORTHO05D000576 4.6e-13 79.0 148 28.4
BraA01t03017Z Brassica rapa HOM05D000629 ORTHO05D000576 4.6e-13 79.0 148 28.4
BcaC06g31798 Brassica carinata HOM05D000629 ORTHO05D000576 6.0e-13 78.6 139 27.3
BcaC06g31799 Brassica carinata HOM05D000629 ORTHO05D000576 6.0e-13 78.6 139 27.3
CAN.G206.75 Capsicum annuum HOM05D000629 ORTHO05D000576 6.0e-13 78.6 162 30.9
CARHR010590 Cardamine hirsuta HOM05D000629 ORTHO05D000576 6.0e-13 78.6 144 27.8
A03p66060 Brassica napus HOM05D000629 ORTHO05D000576 7.9e-13 78.2 148 27.7
C05p51410 Brassica napus HOM05D000629 ORTHO05D000576 7.9e-13 78.2 148 27.7
BraA03t15661Z Brassica rapa HOM05D000629 ORTHO05D000576 7.9e-13 78.2 148 27.7
Carub.0003s0081 Capsella rubella HOM05D000629 ORTHO05D000576 7.9e-13 78.2 145 29.0
FvH4_6g49780 Fragaria vesca HOM05D000629 ORTHO05D000576 7.9e-13 78.2 191 30.4
HanXRQChr17g0570321 Helianthus annuus HOM05D000629 ORTHO05D000576 7.9e-13 78.2 153 28.1
BraA07t30758Z Brassica rapa HOM05D000629 ORTHO05D000576 1.0e-12 77.8 138 31.2
AT3G01320 Arabidopsis thaliana HOM05D000629 ORTHO05D000576 1.3e-12 77.4 162 29.0
Solyc02g087373.1 Solanum lycopersicum HOM05D000629 ORTHO05D000576 1.3e-12 77.4 148 31.1
Solyc02g087377.1 Solanum lycopersicum HOM05D000629 ORTHO05D000576 1.3e-12 77.4 148 31.1
Carub.0001s0989 Capsella rubella HOM05D000629 ORTHO05D000576 1.8e-12 77.0 144 28.5
ECA246G4457 Erigeron canadensis HOM05D000629 ORTHO05D000576 1.8e-12 77.0 158 28.5
HanXRQChr14g0448871 Helianthus annuus HOM05D000629 ORTHO05D000576 2.3e-12 76.6 187 26.7
Aa31LG4G10840 Aethionema arabicum HOM05D000629 ORTHO05D000576 3.0e-12 76.3 145 29.0
Solyc02g087365.1 Solanum lycopersicum HOM05D000629 ORTHO05D000576 3.0e-12 76.3 181 29.8
AL1G21230 Arabidopsis lyrata HOM05D000629 ORTHO05D000576 3.9e-12 75.9 144 27.8
Carub.0006s2752 Capsella rubella HOM05D000629 ORTHO05D000576 3.9e-12 75.9 140 29.3
COL.COLO4_36272 Corchorus olitorius HOM05D000629 ORTHO05D000576 3.9e-12 75.9 163 27.6
BNapus_Darmor_BZH_scaffold_119p00100 Brassica napus HOM05D000629 ORTHO05D000576 5.1e-12 75.5 184 28.3
BNapus_Darmor_BZH_scaffold_97p00340 Brassica napus HOM05D000629 ORTHO05D000576 5.1e-12 75.5 184 28.3
BolC1t05951H Brassica oleracea HOM05D000629 ORTHO05D000576 5.1e-12 75.5 183 27.9
Migut.E00130 Erythranthe guttata HOM05D000629 ORTHO05D000576 5.1e-12 75.5 176 27.8
arahy.Tifrunner.gnm1.ann1.1U4MMV Arachis hypogaea HOM05D000629 ORTHO05D000576 6.7e-12 75.1 154 31.8
CAN.G206.76 Capsicum annuum HOM05D000629 ORTHO05D000576 6.7e-12 75.1 142 28.2
BcaC09g47650 Brassica carinata HOM05D000629 ORTHO05D000576 8.7e-12 74.7 185 27.0
CAN.G206.78 Capsicum annuum HOM05D000629 ORTHO05D000576 8.7e-12 74.7 158 27.8
FAN08G1271 Fragaria x ananassa HOM05D000629 ORTHO05D000576 8.7e-12 74.7 178 28.7
Sopen02g032130 Solanum pennellii HOM05D000629 ORTHO05D000013 8.7e-12 74.7 148 30.4
AL2G29270 Arabidopsis lyrata HOM05D000629 ORTHO05D000576 1.1e-11 74.3 145 25.5
AT1G10450 Arabidopsis thaliana HOM05D000629 ORTHO05D000576 1.1e-11 74.3 144 27.8
arahy.Tifrunner.gnm1.ann1.91F6L8 Arachis hypogaea HOM05D000629 ORTHO05D000576 1.1e-11 74.3 154 31.8
Os05g0100500 Oryza sativa ssp. japonica HOM05D000629 ORTHO05D000576 1.1e-11 74.3 151 30.5
AL1G38030 Arabidopsis lyrata HOM05D000629 ORTHO05D000576 1.5e-11 73.9 157 30.6
FAN05G4494 Fragaria x ananassa HOM05D000629 ORTHO05D000576 1.9e-11 73.6 115 34.8
Solyc02g087390.3 Solanum lycopersicum HOM05D000629 ORTHO05D000576 2.5e-11 73.2 148 30.4
Aa31LG7G7960 Aethionema arabicum HOM05D000629 ORTHO05D000576 3.3e-11 72.8 153 28.1
Os01g0109700 Oryza sativa ssp. japonica HOM05D000629 ORTHO05D000576 4.3e-11 72.4 122 33.6
Sp5g25130 Schrenkiella parvula HOM05D000629 ORTHO05D000576 7.4e-11 71.6 144 28.5
FAN04G3120 Fragaria x ananassa HOM05D000629 ORTHO05D000576 9.6e-11 71.2 177 26.6
QL02p079032 Quercus lobata HOM05D000629 ORTHO05D000576 1.3e-10 70.9 189 27.5
QL02p079049 Quercus lobata HOM05D000629 ORTHO05D000576 1.6e-10 70.5 174 25.9
Carub.0002s1671 Capsella rubella HOM05D000629 ORTHO05D000576 2.1e-10 70.1 145 25.5
PSO541G4761 Papaver somniferum HOM05D000629 ORTHO05D000576 2.1e-10 70.1 114 29.8
Sopen10g018960 Solanum pennellii HOM05D000629 ORTHO05D000576 2.1e-10 70.1 151 26.5
PGSC0003DMG400001398 Solanum tuberosum HOM05D000629 ORTHO05D000576 2.1e-10 70.1 148 27.7
BcaB03g15528 Brassica carinata HOM05D000629 ORTHO05D000576 2.8e-10 69.7 138 26.8
C06p43890 Brassica napus HOM05D000629 ORTHO05D000576 3.7e-10 69.3 142 28.9
BolC6t39461H Brassica oleracea HOM05D000629 ORTHO05D000576 3.7e-10 69.3 142 28.9
FAN14G4427 Fragaria x ananassa HOM05D000629 ORTHO05D000576 3.7e-10 69.3 157 30.6
A05p16730 Brassica napus HOM05D000629 ORTHO05D000576 6.2e-10 68.6 147 27.2
Solyc07g041320.3 Solanum lycopersicum HOM05D000629 ORTHO05D000576 8.2e-10 68.2 148 27.0
A05p16720 Brassica napus HOM05D000629 ORTHO05D000576 1.1e-09 67.8 147 26.5
C02p27220 Brassica napus HOM05D000629 ORTHO05D000576 1.1e-09 67.8 145 28.3
BraA05t20576Z Brassica rapa HOM05D000629 ORTHO05D000576 1.1e-09 67.8 147 26.5
BcaC08g44274 Brassica carinata HOM05D000629 ORTHO05D000576 1.8e-09 67.0 147 27.2
A02p16300 Brassica napus HOM05D000629 ORTHO05D000576 1.8e-09 67.0 145 27.6
BraA02t06688Z Brassica rapa HOM05D000629 ORTHO05D000576 1.8e-09 67.0 145 27.6
Sp5g25170 Schrenkiella parvula HOM05D000629 ORTHO05D000576 1.8e-09 67.0 143 25.9
C06p16950 Brassica napus HOM05D000629 ORTHO05D000576 2.4e-09 66.6 147 27.2
BolC2t08783H Brassica oleracea HOM05D000629 ORTHO05D000576 2.4e-09 66.6 145 28.3
BolC6t36894H Brassica oleracea HOM05D000629 ORTHO05D000576 2.4e-09 66.6 147 27.2
Zm00001eb135790 Zea mays HOM05D000629 ORTHO05D000576 3.1e-09 66.2 148 26.4
C02p27260 Brassica napus HOM05D000629 ORTHO05D000576 4.0e-09 65.9 145 27.6
Aqoxy3G03164 Aquilegia oxysepala HOM05D000629 ORTHO05D000576 9.0e-09 64.7 142 29.6
CAN.G361.3 Capsicum annuum HOM05D000629 ORTHO05D000576 9.0e-09 64.7 117 33.3
FvH4_5g22630 Fragaria vesca HOM05D000629 ORTHO05D014635 1.2e-08 64.3 159 27.0
FAN18G1989 Fragaria x ananassa HOM05D000629 ORTHO05D014635 1.2e-08 64.3 159 27.0
FAN18G3419 Fragaria x ananassa HOM05D000629 ORTHO05D014635 1.2e-08 64.3 159 27.0
Glyma.08G293000 Glycine max HOM05D000629 ORTHO05D000576 1.2e-08 64.3 169 26.0
Lalb_Chr05g0230121 Lupinus albus HOM05D000629 ORTHO05D000576 1.2e-08 64.3 144 26.4
SHI20999 Sapria himalayana HOM05D000629 ORTHO05D000576 1.2e-08 64.3 159 27.7
PGSC0003DMG400039730 Solanum tuberosum HOM05D000629 ORTHO05D000576 1.5e-08 63.9 151 25.2
AT1G70030 Arabidopsis thaliana HOM05D000629 ORTHO05D000576 2.0e-08 63.5 147 24.5
BcaB05g24517 Brassica carinata HOM05D000629 ORTHO05D000576 2.0e-08 63.5 150 28.0
Lalb_Chr07g0193051 Lupinus albus HOM05D000629 ORTHO05D000576 2.6e-08 63.2 144 25.7
BolC2t08785H Brassica oleracea HOM05D000629 ORTHO05D000576 3.4e-08 62.8 140 27.9
Zm00001eb135780 Zea mays HOM05D000629 ORTHO05D000576 3.4e-08 62.8 148 24.3
Sopen04g011230 Solanum pennellii HOM05D000014 ORTHO05D000589 4.5e-08 62.4 134 29.1
Lalb_Chr05g0230101 Lupinus albus HOM05D000629 ORTHO05D000576 5.8e-08 62.0 151 26.5
BcaC03g15153 Brassica carinata HOM05D000629 ORTHO05D000576 7.6e-08 61.6 120 30.8
A02p16310 Brassica napus HOM05D000629 ORTHO05D000576 7.6e-08 61.6 145 26.2
BraA02t06689Z Brassica rapa HOM05D000629 ORTHO05D000576 7.6e-08 61.6 145 26.2
DCAR_026572 Daucus carota HOM05D000629 ORTHO05D000576 7.6e-08 61.6 144 26.4
PGSC0003DMG400047007 Solanum tuberosum HOM05D000629 ORTHO05D000576 7.6e-08 61.6 151 25.2
BraA02t06691Z Brassica rapa HOM05D000629 ORTHO05D000576 1.0e-07 61.2 138 25.4
Solyc04g025000.2 Solanum lycopersicum HOM05D000629 ORTHO05D000576 1.0e-07 61.2 140 25.0
AT1G24200 Arabidopsis thaliana HOM05D000629 ORTHO05D000576 1.3e-07 60.8 152 27.6
BcaB05g24519 Brassica carinata HOM05D000629 ORTHO05D000576 1.7e-07 60.5 120 30.0
C02p27200 Brassica napus HOM05D000629 ORTHO05D000576 1.7e-07 60.5 118 30.5
BcaB05g24515 Brassica carinata HOM05D000629 ORTHO05D000576 2.2e-07 60.1 120 30.8
FAN02G2198 Fragaria x ananassa HOM05D000629 ORTHO05D000576 2.2e-07 60.1 93 33.3
CANSAT35G1875 Cannabis sativa HOM05D000629 ORTHO05D000576 2.9e-07 59.7 151 27.8
A02p16340 Brassica napus HOM05D000629 ORTHO05D000576 4.9e-07 58.9 118 28.8
BcaB05g24516 Brassica carinata HOM05D000629 ORTHO05D000576 6.5e-07 58.5 120 30.0
CSS0004637 Camellia sinensis var. sinensis HOM05D000629 ORTHO05D000576 8.4e-07 58.2 137 30.7
Carub.0350s0001 Capsella rubella HOM05D000629 ORTHO05D000576 1.1e-06 57.8 109 29.4
Dinv21339 Davidia involucrata HOM05D000629 ORTHO05D000576 1.1e-06 57.8 158 26.6
BolC2t08780H Brassica oleracea HOM05D000629 ORTHO05D000576 3.2e-06 56.2 114 29.8
SGA_v2.0_scaffold30G12513 Striga asiatica HOM05D000629 ORTHO05D000576 3.2e-06 56.2 98 32.7
vmacro18221 Vaccinium macrocarpon HOM05D000629 ORTHO05D000576 3.2e-06 56.2 185 23.2
C02p27240 Brassica napus HOM05D000629 ORTHO05D000576 4.2e-06 55.8 118 29.7
CSS0009731 Camellia sinensis var. sinensis HOM05D000629 ORTHO05D000576 4.2e-06 55.8 131 29.8
TPR.G21137 Trifolium pratense HOM05D000629 ORTHO05D000576 5.5e-06 55.5 81 38.3
unitig_8.g2942 Utricularia gibba HOM05D000629 ORTHO05D000576 5.5e-06 55.5 183 21.9
Nitab4.5_0004905g0090 Nicotiana tabacum HOM05D000629 ORTHO05D000576 7.1e-06 55.1 97 29.9
THA.LOC104802413 Tarenaya hassleriana HOM05D000629 ORTHO05D000576 9.3e-06 54.7 92 33.7


User provided reference genes

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