Gene: Solyc02g067570.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc02g067570.3
  • Transcript Identifier Solyc02g067570.3.1
  • Gene Type Coding gene
  • Location SL4.0ch02 : 35738487-35750366 : positive

Gene Family Information

  • ID HOM05D000629
  • #Genes/#Species 905/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc02g067570.3.1
  • uniprot A0A3Q7FLP5
  • gene_id Solyc02g067570

Descriptions

  • Description Paired amphipathic helix protein Sin3-like 1 (AHRD V3.3 *** A0A2G2XCQ9_CAPBA)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0000122
IBA
GOA Databasenegative regulation of transcription by RNA polymerase II
GO:0016575
IBA
GOA Databasehistone deacetylation
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT1G24190
GO:0045892
ISO
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated AT1G24190

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003714
IBA
IEA
GOA Databasetranscription corepressor activity
GO:0003714
IEA
InterProtranscription corepressor activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G24230

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0000118
IBA
GOA Databasehistone deacetylase complex
GO:0000785
IBA
GOA Databasechromatin
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G15020

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036600 Paired amphipathic helix superfamily
IPR013194 Histone deacetylase interacting domain
IPR003822 Paired amphipathic helix
IPR031693 Sin3, C-terminal
IPR039774 Transcriptional regulatory protein Sin3-like
Mapman id Description
12.3.2.1.1.2.2 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.SNL-HDA19 histone deacetylase complex.key scaffold component SNL