Gene: Solyc02g087390.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc02g087390.3
- Transcript Identifier Solyc02g087390.3.1
- Gene Type Coding gene
- Location SL4.0ch02 : 47880082-47883470 : negative
Gene Family Information
- ID HOM05D000629
- #Genes/#Species 905/100
- Phylogenetic origin
- ID ORTHO05D000576
- #Genes/#Species 768/100
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Solyc02g087390.3.1
- uniprot A0A3Q7F9Z3
- gene_id Solyc02g087390
Descriptions
- Description Paired amphipathic helix protein Sin3-like 4 (AHRD V3.3 *** A0A2G3D9H4_CAPCH)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0000122 | IBA | GOA Database | negative regulation of transcription by RNA polymerase II | |
| GO:0016575 | IBA | GOA Database | histone deacetylation | |
| GO:0009737 | ISO | PLAZA Integrative Orthology | response to abscisic acid | AT1G24190 |
| GO:0045892 | ISO | PLAZA Integrative Orthology | negative regulation of transcription, DNA-templated | AT1G24190 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003714 | IBA IEA | GOA Database | transcription corepressor activity | |
| GO:0003714 | IEA | InterPro | transcription corepressor activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G01320 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0000118 | IBA | GOA Database | histone deacetylase complex | |
| GO:0000785 | IBA | GOA Database | chromatin | |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT5G15020 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |