Gene: AT3G01320

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G01320
  • Transcript Identifier AT3G01320.1
  • Gene Type Coding gene
  • Location Chr3 : 106730-113197 : positive

Gene Family Information

  • ID HOM05D000629
  • #Genes/#Species 905/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G01320.1
  • symbol SNL1
  • uniprot Q9SRH9

Descriptions

  • Description SIN3-like 1
  • Computational description SIN3-like 1 (SNL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 2 (TAIR:AT5G15020.2); Has 8924 Blast hits to 4656 proteins in 481 species: Archae - 44; Bacteria - 2736; Metazoa - 2712; Fungi - 1300; Plants - 581; Viruses - 181; Other Eukaryotes - 1370 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045892
IDA
Gene Ontologynegative regulation of transcription, DNA-templated1
GO:0000122
IBA
Gene Ontologynegative regulation of transcription by RNA polymerase II2
GO:0016575
IBA
Gene Ontologyhistone deacetylation2
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003714
IBA
IEA
Gene Ontologytranscription corepressor activity2
GO:0003714
IEA
InterProtranscription corepressor activity
GO:0005515
IPI
Gene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus1
GO:0000785
IBA
Gene Ontologychromatin2
GO:0000118
IBA
Gene Ontologyhistone deacetylase complex2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR039774 Transcriptional regulatory protein Sin3-like
IPR036600 Paired amphipathic helix superfamily
IPR003822 Paired amphipathic helix
IPR013194 Histone deacetylase interacting domain
IPR031693 Sin3, C-terminal
Mapman id Description
12.3.2.1.1.2.2 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.SNL-HDA19 histone deacetylase complex.key scaffold component SNL