Gene: AT1G59890

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G59890
  • Transcript Identifier AT1G59890.1
  • Gene Type Coding gene
  • Location Chr1 : 22044326-22050670 : positive

Gene Family Information

  • ID HOM05D000629
  • #Genes/#Species 905/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G59890.1
  • symbol SNL5
  • uniprot Q9XIE1

Descriptions

  • Description SIN3-like 5
  • Computational description SIN3-like 5 (SNL5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 6 (TAIR:AT1G10450.1); Has 2059 Blast hits to 826 proteins in 195 species: Archae - 0; Bacteria - 5; Metazoa - 811; Fungi - 648; Plants - 432; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016575
IBA
Gene Ontologyhistone deacetylation1
GO:0000122
IBA
Gene Ontologynegative regulation of transcription by RNA polymerase II1
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003714
IBA
IEA
Gene Ontologytranscription corepressor activity1
GO:0003714
IEA
InterProtranscription corepressor activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0000118
IBA
Gene Ontologyhistone deacetylase complex1
GO:0000785
IBA
Gene Ontologychromatin1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013194 Histone deacetylase interacting domain
IPR036600 Paired amphipathic helix superfamily
IPR039774 Transcriptional regulatory protein Sin3-like
IPR003822 Paired amphipathic helix
IPR031693 Sin3, C-terminal
Mapman id Description
12.3.2.1.1.2.2 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.SNL-HDA19 histone deacetylase complex.key scaffold component SNL