Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A728T41 Lonicera japonica HOM05D006139 ORTHO05D007681 0.0e+00 1083.2 545 100.0
Hma1.2p1_0412F.1_g147150 Hydrangea macrophylla HOM05D006139 ORTHO05D007681 5.2e-248 860.9 587 75.0
CSS0045945 Camellia sinensis var. sinensis HOM05D006139 ORTHO05D007681 2.2e-246 855.5 596 73.0
Potri.011G107400 Populus trichocarpa HOM05D006139 ORTHO05D007681 4.7e-241 837.8 587 72.2
vmacro13984 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 4.9e-238 827.8 674 65.3
GSVIVG01031668001 Vitis vinifera HOM05D006139 ORTHO05D007681 6.4e-238 827.4 596 72.5
Rhsim07G0086500 Rhododendron simsii HOM05D006139 ORTHO05D007681 6.0e-236 820.8 660 65.8
Manes.03G099000 Manihot esculenta HOM05D006139 ORTHO05D007681 3.9e-235 818.1 596 70.5
QL10p044141 Quercus lobata HOM05D006139 ORTHO05D007681 8.7e-235 817.0 619 68.2
Ciclev10019318m.g Citrus clementina HOM05D006139 ORTHO05D007681 1.1e-234 816.6 586 71.7
Sabra11G0095200 Salix brachista HOM05D006139 ORTHO05D007681 2.5e-234 815.5 595 70.3
Prupe.1G178000 Prunus persica HOM05D006139 ORTHO05D007681 9.0e-232 807.0 586 70.5
Sopen09g036170 Solanum pennellii HOM05D006139 ORTHO05D007681 1.7e-230 802.7 586 70.6
Cc03_g10570 Coffea canephora HOM05D006139 ORTHO05D007681 1.9e-229 799.3 596 69.0
TAR365G1167 Trochodendron aralioides HOM05D006139 ORTHO05D007681 1.9e-229 799.3 568 73.1
Solyc09g098230.3 Solanum lycopersicum HOM05D006139 ORTHO05D007681 2.4e-229 798.9 586 70.5
Eucgr.F03241 Eucalyptus grandis HOM05D006139 ORTHO05D007681 3.2e-229 798.5 596 68.5
Migut.N00440 Erythranthe guttata HOM05D006139 ORTHO05D007681 4.2e-229 798.1 595 69.1
Sc22g0003230 Simmondsia chinensis HOM05D006139 ORTHO05D007681 7.1e-229 797.3 595 69.1
Aqoxy2G03950 Aquilegia oxysepala HOM05D006139 ORTHO05D007681 1.2e-228 796.6 588 69.4
CsaV3_4G003770 Cucumis sativus L. HOM05D006139 ORTHO05D007681 2.7e-228 795.4 595 68.9
Sed0017452 Sechium edule HOM05D006139 ORTHO05D007681 6.0e-228 794.3 586 69.3
MELO3C017678.2 Cucumis melo HOM05D006139 ORTHO05D007681 1.8e-227 792.7 586 69.6
TWI38G2388 Tripterygium wilfordii HOM05D006139 ORTHO05D007681 3.9e-227 791.6 587 69.3
Thecc.07G123700 Theobroma cacao HOM05D006139 ORTHO05D007681 1.9e-226 789.3 596 67.8
Haze_11079 Corylus avellana HOM05D006139 ORTHO05D007681 3.3e-226 788.5 534 74.9
ECA246G3778 Erigeron canadensis HOM05D006139 ORTHO05D007681 3.7e-225 785.0 588 69.0
Nn3g20967 Nelumbo nucifera HOM05D006139 ORTHO05D007681 8.1e-225 783.9 586 68.6
MSTRG.17865 Avicennia marina HOM05D006139 ORTHO05D007681 2.4e-224 782.3 596 68.1
CANSAT11G1108 Cannabis sativa HOM05D006139 ORTHO05D007681 4.0e-224 781.6 595 67.1
Duzib213G0841 Durio zibethinus HOM05D006139 ORTHO05D007681 9.9e-223 776.9 596 67.1
PSO675G6876 Papaver somniferum HOM05D006139 ORTHO05D007681 4.9e-222 774.6 594 67.3
CiPaw.01G108300 Carya illinoinensis HOM05D006139 ORTHO05D007681 6.4e-222 774.2 596 67.4
MD13G1278700 Malus domestica HOM05D006139 ORTHO05D007681 8.4e-222 773.9 586 68.1
PSO017G2886 Papaver somniferum HOM05D006139 ORTHO05D007681 5.5e-221 771.2 595 66.7
SGA_v2.0_scaffold109G31142 Striga asiatica HOM05D006139 ORTHO05D007681 5.5e-221 771.2 588 67.7
Lsat_1_v5_gn_3_24941 Lactuca sativa HOM05D006139 ORTHO05D007681 6.0e-220 767.7 587 67.1
RcHm_v2.0_Chr4g0409801 Rosa chinensis HOM05D006139 ORTHO05D007681 6.7e-219 764.2 585 67.4
arahy.Tifrunner.gnm1.ann1.46LBLY Arachis hypogaea HOM05D006139 ORTHO05D007681 1.9e-218 762.7 595 66.1
Gohir.A01G052100 Gossypium hirsutum HOM05D006139 ORTHO05D007681 5.6e-218 761.1 596 66.8
Glyma.20G248800 Glycine max HOM05D006139 ORTHO05D007681 9.6e-218 760.4 592 66.4
Lalb_Chr06g0164661 Lupinus albus HOM05D006139 ORTHO05D007681 6.2e-217 757.7 588 66.0
Gorai.002G052100 Gossypium raimondii HOM05D006139 ORTHO05D007681 1.4e-216 756.5 596 66.3
FvH4_4g12150 Fragaria vesca HOM05D006139 ORTHO05D007681 4.2e-213 745.0 586 65.5
FAN12G2778 Fragaria x ananassa HOM05D006139 ORTHO05D007681 4.2e-213 745.0 586 65.5
Peaxi162Scf00286g00443 Petunia axillaris HOM05D006139 ORTHO05D007681 4.6e-212 741.5 520 73.5
Psat6g243280 Pisum sativum HOM05D006139 ORTHO05D007681 1.5e-210 736.5 595 62.5
VMungo0720G1636 Vigna mungo HOM05D006139 ORTHO05D007681 7.4e-210 734.2 588 63.9
PGR031G2404 Punica granatum HOM05D006139 ORTHO05D007681 2.8e-209 732.3 587 63.5
Lj5g0023092 Lotus japonicus HOM05D006139 ORTHO05D007681 5.0e-206 721.5 594 62.8
Hund19684 Selenicereus undatus HOM05D006139 ORTHO05D007681 9.3e-205 717.2 586 65.0
Medtr1g116980 Medicago truncatula HOM05D006139 ORTHO05D007681 2.1e-204 716.1 589 62.8
Phvul.007G001600 Phaseolus vulgaris HOM05D006139 ORTHO05D007681 2.5e-202 709.1 582 63.2
MBI07_g00628_MAGBIO Magnolia biondii HOM05D006139 ORTHO05D007681 7.4e-202 707.6 536 68.3
Zm00001eb116810 Zea mays HOM05D006139 ORTHO05D007681 2.2e-201 706.1 589 59.8
Nitab4.5_0001526g0130 Nicotiana tabacum HOM05D006139 ORTHO05D007681 1.0e-198 697.2 544 66.4
Carub.0001s1670 Capsella rubella HOM05D006139 ORTHO05D007681 2.2e-198 696.0 586 61.3
Gohir.D01G041500 Gossypium hirsutum HOM05D006139 ORTHO05D007681 5.0e-198 694.9 547 66.4
COL.COLO4_17513 Corchorus olitorius HOM05D006139 ORTHO05D007681 8.5e-198 694.1 567 64.4
Nitab4.5_0001687g0050 Nicotiana tabacum HOM05D006139 ORTHO05D007681 1.1e-197 693.7 494 71.1
C05p15280 Brassica napus HOM05D006139 ORTHO05D007681 1.4e-197 693.3 587 61.2
BcaC05g25552 Brassica carinata HOM05D006139 ORTHO05D007681 1.9e-197 693.0 587 61.0
Thhalv10007085m.g Eutrema salsugineum HOM05D006139 ORTHO05D007681 1.9e-197 693.0 587 61.0
Sp1g15110 Schrenkiella parvula HOM05D006139 ORTHO05D007681 2.5e-197 692.6 587 61.3
AT1G16970 Arabidopsis thaliana HOM05D006139 ORTHO05D007681 5.5e-197 691.4 588 60.5
BcaB02g06659 Brassica carinata HOM05D006139 ORTHO05D007681 9.4e-197 690.6 586 60.9
THA.LOC104812308 Tarenaya hassleriana HOM05D006139 ORTHO05D007681 3.6e-196 688.7 585 60.3
A06p12870 Brassica napus HOM05D006139 ORTHO05D007681 6.1e-196 688.0 587 60.6
ClCG07G016640 Citrullus lanatus HOM05D006139 ORTHO05D007681 2.2e-193 679.5 601 62.4
CARHR017480 Cardamine hirsuta HOM05D006139 ORTHO05D007681 8.2e-193 677.6 598 60.2
ATR0609G005 Amborella trichopoda HOM05D006139 ORTHO05D007681 1.8e-192 676.4 590 59.8
AUR62003718 Chenopodium quinoa HOM05D006139 ORTHO05D007681 4.1e-192 675.2 548 64.1
FAN07G2792 Fragaria x ananassa HOM05D006139 ORTHO05D007681 1.0e-190 670.6 586 60.6
AUR62018029 Chenopodium quinoa HOM05D006139 ORTHO05D007681 5.0e-190 668.3 617 58.3
FAN12G0395 Fragaria x ananassa HOM05D006139 ORTHO05D007681 2.5e-189 666.0 607 59.0
FAN17G0552 Fragaria x ananassa HOM05D006139 ORTHO05D007681 2.5e-189 666.0 595 59.8
CAN.G710.40 Capsicum annuum HOM05D006139 ORTHO05D007681 5.5e-189 664.8 598 60.7
Dinv44237 Davidia involucrata HOM05D006139 ORTHO05D007681 5.5e-189 664.8 452 75.9
arahy.Tifrunner.gnm1.ann1.JAL8JD Arachis hypogaea HOM05D006139 ORTHO05D007681 1.2e-188 663.7 605 60.0
BolC5t30234H Brassica oleracea HOM05D006139 ORTHO05D007681 6.3e-185 651.4 587 58.4
BraA06t24447Z Brassica rapa HOM05D006139 ORTHO05D007681 7.0e-184 647.9 587 58.1
Cpa.g.sc77.50 Carica papaya HOM05D006139 ORTHO05D007681 4.3e-149 532.3 503 58.6
Mapoly0113s0020 Marchantia polymorpha HOM05D006139 ORTHO05D007681 3.6e-148 529.3 589 47.0
CDE02G2779 Ceratophyllum demersum HOM05D006139 ORTHO05D007681 7.0e-144 515.0 411 64.5
Atru.chr2.2053 Acer truncatum HOM05D006139 ORTHO05D007681 6.6e-142 508.4 314 79.0
SMO361G0513 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 2.2e-137 493.4 571 46.4
HPP92_015930 Vanilla planifolia HOM05D006139 ORTHO05D007681 8.3e-137 491.5 444 59.2
SMO361G0769 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 7.1e-136 488.4 571 45.9
PGSC0003DMG400014069 Solanum tuberosum HOM05D006139 ORTHO05D007681 4.0e-131 472.6 297 79.8
Oeu013397.2 Olea europaea HOM05D006139 ORTHO05D007681 8.9e-131 471.5 379 66.0
AagrBONN_evm.TU.Sc2ySwM_228.1556 Anthoceros agrestis HOM05D006139 ORTHO05D007681 4.4e-122 442.6 587 43.6
TPR.G8879 Trifolium pratense HOM05D006139 ORTHO05D007681 9.6e-117 424.9 302 70.5
CBR_g19434 Chara braunii HOM05D006139 ORTHO05D007681 3.3e-109 399.8 589 39.2
Pp3c18_7140 Physcomitrium patens HOM05D006139 ORTHO05D007681 4.8e-108 396.0 594 39.4
Aa31LG7G1410 Aethionema arabicum HOM05D006139 ORTHO05D007681 3.5e-95 353.2 540 41.9
DCAR_005496 Daucus carota HOM05D006139 ORTHO05D007681 9.7e-93 345.1 238 73.1
SHI27652 Sapria himalayana HOM05D006139 ORTHO05D007681 3.1e-91 340.1 360 53.3
Atru.chr2.2052 Acer truncatum HOM05D006139 ORTHO05D007681 1.7e-89 334.3 200 81.0
DCAR_005495 Daucus carota HOM05D006139 ORTHO05D007681 4.6e-87 326.2 198 81.8
TPR.G8907 Trifolium pratense HOM05D006139 ORTHO05D007681 3.9e-86 323.2 234 69.2
TPR.G8868 Trifolium pratense HOM05D006139 ORTHO05D007681 1.3e-81 308.1 285 56.8
Ca_11423_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 4.4e-77 293.1 201 71.6
unitig_578.g15953 Utricularia gibba HOM05D006139 ORTHO05D007681 5.3e-75 286.2 199 70.4
Ah.03g143030 Amaranthus hybridus HOM05D006139 ORTHO05D007681 5.7e-61 239.6 187 67.4
SEGI_35314 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 1.8e-59 234.6 272 47.8
Os07g0184900 Oryza sativa ssp. japonica HOM05D006139 ORTHO05D007681 2.4e-59 234.2 160 68.8
FAN22G0061 Fragaria x ananassa HOM05D006139 ORTHO05D007681 4.2e-56 223.4 178 66.3
unitig_578.g15954 Utricularia gibba HOM05D006139 ORTHO05D004041 2.6e-53 214.2 165 64.8
Ca_11425_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 3.3e-48 197.2 135 71.9
arahy.Tifrunner.gnm1.ann1.6RHH59 Arachis hypogaea HOM05D006139 ORTHO05D007681 9.8e-45 185.7 133 69.9
Hund20183 Selenicereus undatus HOM05D006139 ORTHO05D007681 4.9e-44 183.3 161 62.1
CANSAT78G0600 Cannabis sativa HOM05D006139 ORTHO05D007681 4.9e-36 156.8 118 62.7
Cfa021664 Carpinus fangiana HOM05D006139 ORTHO05D007681 6.4e-36 156.4 605 26.1
Cre13.g607500 Chlamydomonas reinhardtii HOM05D006139 ORTHO05D007681 2.4e-35 154.5 352 33.0
Ca_11424_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 2.4e-35 154.5 111 66.7
AUR62043732 Chenopodium quinoa HOM05D006139 ORTHO05D007681 8.6e-25 119.4 84 66.7
SEGI_31905 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 3.4e-21 107.5 74 63.5
BolC4t22161H Brassica oleracea HOM05D006139 ORTHO05D007681 1.6e-18 98.6 89 56.2
HanXRQChr13g0406711 Helianthus annuus HOM05D006139 ORTHO05D007681 3.5e-18 97.4 57 77.2
MCO14G338 Micromonas commoda HOM05D006139 ORTHO05D007681 6.0e-18 96.7 301 28.9
CARHR154100 Cardamine hirsuta HOM05D006139 ORTHO05D007681 8.6e-17 92.8 66 65.2
Potri.006G132501 Populus trichocarpa HOM05D006139 ORTHO05D007681 5.6e-16 90.1 78 60.3
vmacro12608 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 4.0e-14 84.0 65 69.2
Dinv25612 Davidia involucrata HOM05D000447 ORTHO05D007681 3.5e-10 70.9 77 53.2
Zm00001eb114470 Zea mays HOM05D006139 ORTHO05D007681 7.3e-08 63.2 36 75.0
SEGI_11325 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 4.8e-07 60.5 40 62.5
Ah.03g143010 Amaranthus hybridus HOM05D006139 ORTHO05D007681 9.0e-06 56.2 38 68.4


User provided reference genes

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