Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P1227T99 Lonicera japonica HOM05D000216 ORTHO05D000634 1.0e-66 256.5 123 100.0
Lj2P1224T100 Lonicera japonica HOM05D000216 ORTHO05D000634 4.0e-63 244.6 116 100.0
Lj2A1237T129 Lonicera japonica HOM05D000216 ORTHO05D000634 1.9e-52 209.1 101 97.0
Lj2C1238G20 Lonicera japonica HOM05D000216 ORTHO05D000634 1.9e-52 209.1 101 97.0
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 1.9e-52 209.1 101 97.0
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 9.3e-52 206.8 101 96.0
Nn3g18112 Nelumbo nucifera HOM05D000216 ORTHO05D000634 1.2e-51 206.5 101 96.0
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 1.2e-51 206.5 101 95.0
CAN.G939.14 Capsicum annuum HOM05D000216 ORTHO05D000634 2.7e-51 205.3 101 95.0
Hma1.2p1_0094F.1_g047104 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 2.7e-51 205.3 103 94.2
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 4.6e-51 204.5 101 95.0
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 4.6e-51 204.5 101 95.0
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 6.0e-51 204.1 101 93.1
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 6.0e-51 204.1 101 92.1
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 6.0e-51 204.1 101 92.1
PGSC0003DMG400020296 Solanum tuberosum HOM05D000216 ORTHO05D000634 7.8e-51 203.8 101 95.0
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 2.3e-50 202.2 101 92.1
SHI35296 Sapria himalayana HOM05D000216 ORTHO05D000634 2.3e-50 202.2 101 93.1
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 3.9e-50 201.4 103 90.3
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 3.9e-50 201.4 103 90.3
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 5.1e-50 201.1 101 94.1
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 6.6e-50 200.7 101 92.1
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 8.7e-50 200.3 101 91.1
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 8.7e-50 200.3 101 91.1
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 1.1e-49 199.9 101 92.1
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 1.1e-49 199.9 101 93.1
Nitab4.5_0005637g0010 Nicotiana tabacum HOM05D000216 ORTHO05D000634 1.5e-49 199.5 101 93.1
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 1.9e-49 199.1 97 94.8
ECA054G0005 Erigeron canadensis HOM05D000216 ORTHO05D000634 2.5e-49 198.7 101 91.1
ECA169G0008 Erigeron canadensis HOM05D000216 ORTHO05D000634 2.5e-49 198.7 101 91.1
SGA_v2.0_scaffold477G52216 Striga asiatica HOM05D000216 ORTHO05D000634 2.5e-49 198.7 101 92.1
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 5.6e-49 197.6 103 88.3
BolSC29t60451H Brassica oleracea HOM05D000216 ORTHO05D000634 5.6e-49 197.6 103 88.3
BolSC44t60847H Brassica oleracea HOM05D000216 ORTHO05D000634 5.6e-49 197.6 103 88.3
BolSC45t60937H Brassica oleracea HOM05D000216 ORTHO05D000634 5.6e-49 197.6 103 88.3
BraSC140t45588Z Brassica rapa HOM05D000216 ORTHO05D000634 5.6e-49 197.6 103 88.3
BraSC151t45695Z Brassica rapa HOM05D000216 ORTHO05D000634 5.6e-49 197.6 103 88.3
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 9.6e-49 196.8 101 91.1
Lsat_1_v5_gn_9_5941 Lactuca sativa HOM05D000216 ORTHO05D000634 9.6e-49 196.8 101 90.1
CARHR281920 Cardamine hirsuta HOM05D000216 ORTHO05D000634 1.3e-48 196.4 103 88.3
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 2.8e-48 195.3 103 87.4
SGA_v2.0_scaffold119G32687 Striga asiatica HOM05D000216 ORTHO05D000634 6.2e-48 194.1 101 89.1
GSVIVG01017094001 Vitis vinifera HOM05D000216 ORTHO05D000634 6.2e-48 194.1 100 90.0
Hund18043 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-47 193.4 101 88.1
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-47 193.4 101 88.1
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-47 193.4 101 88.1
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-47 193.4 101 88.1
Hund28153 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-47 193.4 101 88.1
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-47 193.4 101 88.1
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-47 193.4 101 88.1
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-47 193.4 101 88.1
Hund28617 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-47 193.4 101 88.1
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-47 193.4 101 88.1
Hund29352 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-47 193.4 101 88.1
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-47 193.4 101 88.1
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.4e-47 193.0 101 92.1
Lalb_Chr09g0335371 Lupinus albus HOM05D000216 ORTHO05D000634 1.8e-47 192.6 101 88.1
Lalb_Chr22g0361661 Lupinus albus HOM05D000216 ORTHO05D000634 2.4e-47 192.2 100 89.0
Psat4g147920 Pisum sativum HOM05D000216 ORTHO05D000634 2.4e-47 192.2 101 87.1
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 2.4e-47 192.2 101 87.1
arahy.Tifrunner.gnm1.ann1.KRC0HM Arachis hypogaea HOM05D000216 ORTHO05D000634 5.3e-47 191.0 101 87.1
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 5.3e-47 191.0 101 87.1
AUR62030122 Chenopodium quinoa HOM05D000216 ORTHO05D000634 6.9e-47 190.7 101 88.1
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 6.9e-47 190.7 101 86.1
AUR62024082 Chenopodium quinoa HOM05D000216 ORTHO05D000634 2.0e-46 189.1 101 88.1
Nitab4.5_0001761g0170 Nicotiana tabacum HOM05D000216 ORTHO05D000634 3.4e-46 188.3 97 89.7
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 3.4e-46 188.3 107 84.1
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 7.6e-46 187.2 101 84.2
arahy.Tifrunner.gnm1.ann1.TW2HF4 Arachis hypogaea HOM05D000216 ORTHO05D000634 1.7e-45 186.0 101 85.1
EL10As27g24246 Beta vulgaris HOM05D000216 ORTHO05D007161 1.7e-45 186.0 101 87.1
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 4.9e-45 184.5 107 83.2
CiPaw.12G031000 Carya illinoinensis HOM05D000216 ORTHO05D000634 1.9e-44 182.6 89 95.5
Eucgr.J01352 Eucalyptus grandis HOM05D000216 ORTHO05D000634 7.1e-44 180.6 101 84.2
HanXRQChr00c0300g0573171 Helianthus annuus HOM05D000216 ORTHO05D000634 9.3e-44 180.3 92 90.2
GSVIVG01019173001 Vitis vinifera HOM05D000216 ORTHO05D000634 1.6e-43 179.5 96 86.5
Hund25861 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.6e-43 177.9 101 82.2
ClCG01G011260 Citrullus lanatus HOM05D000216 ORTHO05D000634 1.8e-42 176.0 101 79.2
CAN.G844.3 Capsicum annuum HOM05D000216 ORTHO05D000634 5.1e-42 174.5 101 82.2
MELO3C001093.2 Cucumis melo HOM05D000216 ORTHO05D000634 6.7e-42 174.1 86 91.9
Thhalv10023328m.g Eutrema salsugineum HOM05D000216 ORTHO05D000634 3.3e-41 171.8 92 88.0
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 7.4e-41 170.6 101 80.2
Lalb_Chr06g0173021 Lupinus albus HOM05D000216 ORTHO05D000634 4.0e-39 164.9 98 78.6
Psat5g134600 Pisum sativum HOM05D000216 ORTHO05D000634 1.7e-37 159.5 86 84.9
MELO3C027929.2 Cucumis melo HOM05D000216 ORTHO05D000634 6.4e-37 157.5 78 92.3
HanXRQChr07g0188331 Helianthus annuus HOM05D000216 ORTHO05D000634 5.5e-36 154.5 79 89.9
Hund12597 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.3e-34 149.8 101 66.3
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 1.8e-34 149.4 103 70.9
Migut.D01341 Erythranthe guttata HOM05D000216 ORTHO05D000634 2.3e-34 149.1 101 73.3
SMO086G0013 Selaginella moellendorffii HOM05D000216 ORTHO05D000634 1.1e-33 146.7 100 66.0
Nitab4.5_0002868g0030 Nicotiana tabacum HOM05D000216 ORTHO05D000634 3.4e-30 135.2 100 69.0
BolC5t28870H Brassica oleracea HOM05D000216 ORTHO05D000634 4.5e-30 134.8 71 88.7
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 4.5e-30 134.8 63 98.4
arahy.Tifrunner.gnm1.ann1.ZJYB0J Arachis hypogaea HOM05D000216 ORTHO05D000473 1.3e-29 133.3 63 96.8
HanXRQChr14g0436631 Helianthus annuus HOM05D000216 ORTHO05D000634 1.7e-29 132.9 65 93.8
CAN.G1738.9 Capsicum annuum HOM05D000216 ORTHO05D000634 6.5e-29 131.0 69 85.5
Gorai.001G101300 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.4e-28 129.8 69 85.5
arahy.Tifrunner.gnm1.ann1.09TZAG Arachis hypogaea HOM05D000216 ORTHO05D000634 6.0e-27 124.4 62 91.9
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.0e-26 123.6 63 90.5
Sc10g0006900 Simmondsia chinensis HOM05D000216 ORTHO05D000634 3.0e-26 122.1 69 76.8
HanXRQChr00c0988g0578121 Helianthus annuus HOM05D000216 ORTHO05D000634 2.5e-25 119.0 67 80.6
TPR.G17548 Trifolium pratense HOM05D000216 ORTHO05D000634 1.8e-23 112.8 55 94.5
SEGI_37297 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 6.9e-23 110.9 72 70.8
Oeu045561.1 Olea europaea HOM05D000216 ORTHO05D000634 1.4e-20 103.2 56 82.1
Gohir.A09G019050 Gossypium hirsutum HOM05D000216 ORTHO05D000634 2.5e-20 102.4 57 78.9
Gohir.D13G143950 Gossypium hirsutum HOM05D000216 ORTHO05D000634 3.2e-20 102.1 55 89.1
HanXRQChr03g0073121 Helianthus annuus HOM05D000216 ORTHO05D000634 4.2e-20 101.7 50 96.0
Oeu062867.1 Olea europaea HOM05D000216 ORTHO05D000634 3.9e-18 95.1 51 80.4
Nitab4.5_0001783g0070 Nicotiana tabacum HOM05D000216 ORTHO05D002807 5.1e-18 94.7 51 88.2
Ah.10g028700 Amaranthus hybridus HOM05D029963 ORTHO05D026499 3.3e-17 92.0 48 89.6
FAN27G0873 Fragaria x ananassa HOM05D000743 ORTHO05D000580 7.4e-17 90.9 46 93.5
Solyc01g017420.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.8e-16 89.0 100 53.0
Solyc12g096910.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.2e-13 79.3 40 92.5
Aa31csc39G120 Aethionema arabicum HOM05D000216 ORTHO05D000634 2.9e-13 79.0 75 50.7
Hund27996 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.8e-13 78.6 101 45.5
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.1e-12 77.0 36 100.0
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.1e-12 77.0 36 100.0
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.1e-12 77.0 36 100.0
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.1e-12 77.0 36 100.0
Nitab4.5_0000172g0280 Nicotiana tabacum HOM05D000216 ORTHO05D000634 4.2e-12 75.1 57 61.4
Nn256s45908 Nelumbo nucifera HOM05D000216 ORTHO05D000634 9.4e-12 73.9 42 85.7
Nn2g14713 Nelumbo nucifera HOM05D000216 ORTHO05D000634 9.4e-12 73.9 42 85.7
Nn2g14718 Nelumbo nucifera HOM05D000216 ORTHO05D000634 9.4e-12 73.9 42 85.7
Solyc03g095380.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.0e-10 70.5 59 61.0
arahy.Tifrunner.gnm1.ann1.4QEF9J Arachis hypogaea HOM05D000216 ORTHO05D000634 1.4e-10 70.1 39 76.9
ATR0624G050 Amborella trichopoda HOM05D000216 ORTHO05D000634 2.3e-10 69.3 38 84.2
arahy.Tifrunner.gnm1.ann1.7382T8 Arachis hypogaea HOM05D000216 ORTHO05D000634 2.3e-10 69.3 65 58.5
Migut.D01415 Erythranthe guttata HOM05D000216 ORTHO05D000634 8.8e-10 67.4 47 72.3
Solyc01g017510.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.7e-08 63.2 101 41.6
Cc00_g14860 Coffea canephora HOM05D000228 ORTHO05D001545 5.3e-07 58.2 82 39.0
Prupe.6G089600 Prunus persica HOM05D000228 ORTHO05D001545 1.5e-06 56.6 54 50.0
Nn2g14716 Nelumbo nucifera HOM05D000216 ORTHO05D000634 4.5e-06 55.1 30 86.7
Gohir.A03G036100 Gossypium hirsutum HOM05D000228 ORTHO05D001545 5.9e-06 54.7 54 50.0
Gohir.D03G132200 Gossypium hirsutum HOM05D000228 ORTHO05D001545 5.9e-06 54.7 54 50.0
Gorai.003G139100 Gossypium raimondii HOM05D000228 ORTHO05D001545 5.9e-06 54.7 54 50.0


User provided reference genes

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