Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 3461.0 1752 100.0
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2293.5 1788 66.7
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2288.5 1788 66.6
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2216.0 1792 64.3
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 2171.7 1800 63.1
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 2077.8 1818 60.5
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 2060.8 1797 59.5
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 2040.4 1818 59.8
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 2034.6 1799 59.4
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 1999.6 1792 59.2
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 1998.4 1838 58.2
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 1990.7 1803 58.3
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 1990.3 1799 58.2
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 1974.1 1797 57.9
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 1954.9 1788 57.0
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 1952.6 1802 56.8
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 1943.3 1788 57.2
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 1940.6 1785 56.8
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1940.6 1791 57.7
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1939.1 1798 57.1
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1914.0 1801 56.6
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 1912.1 1801 56.5
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1909.4 1788 56.0
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1907.1 1804 56.4
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 1902.9 1800 56.3
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 1902.5 1789 56.2
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 1900.9 1768 56.9
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1900.2 1826 55.9
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1896.7 1757 57.4
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 1885.9 1788 55.5
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1885.5 1800 55.9
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1885.5 1772 57.1
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 1884.0 1787 55.0
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1881.7 1786 55.3
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 1865.1 1786 54.8
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 1862.8 1789 54.6
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 1862.4 1795 54.7
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 1847.8 1791 55.1
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 1846.2 1776 55.6
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 1844.7 1789 54.0
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 1841.2 1784 53.6
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 1833.9 1802 54.3
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1833.5 1335 70.5
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 1820.8 1656 57.5
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 1818.9 1794 56.8
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 1818.1 1717 56.6
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1815.0 1785 53.8
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1811.6 1785 53.7
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 1806.2 1813 53.7
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 1804.3 1796 53.4
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1801.9 1874 53.5
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 1797.3 1789 53.1
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1788.9 1788 52.2
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 1787.7 1793 52.9
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1780.4 1797 54.1
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 1773.4 1841 51.7
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 1773.1 1796 53.0
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 1770.7 1797 53.0
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1770.4 1709 56.0
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 1749.2 1821 51.5
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 1748.0 1797 53.2
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 1743.0 1812 53.0
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 1736.9 1793 52.1
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 1731.8 1797 52.2
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1723.0 2284 44.7
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1719.9 1831 51.5
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 1719.1 1795 51.9
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 1702.6 1767 51.5
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1691.0 1214 71.0
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1666.4 1785 51.1
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1645.9 1804 49.9
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1635.5 1804 49.2
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 1629.4 1763 49.0
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 1615.1 1765 49.5
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1605.9 1778 49.2
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1594.3 1778 48.6
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 1592.0 1761 48.0
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 1572.8 1761 48.2
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 1570.4 1758 48.1
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 1568.5 1765 47.4
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1566.2 1761 48.6
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1566.2 1765 48.3
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1564.3 1758 48.0
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1556.6 1757 48.1
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1552.3 1769 47.8
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1550.8 1758 48.0
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1548.5 1758 48.1
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1547.7 1757 47.9
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1544.6 1762 47.9
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1538.9 1759 47.8
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 0.0e+00 1531.2 1682 48.6
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1523.8 1847 46.7
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1512.3 1780 47.5
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 1475.3 1720 47.6
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 0.0e+00 1471.4 1581 50.3
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1458.7 1747 46.1
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 0.0e+00 1416.4 1803 43.7
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 0.0e+00 1342.8 1809 42.3
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 0.0e+00 1314.3 1828 41.8
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 0.0e+00 1297.3 1110 59.6
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1187.9 1694 42.9
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 0.0e+00 1162.1 1811 38.4
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1116.3 895 64.6
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 1.8e-281 973.8 1106 48.1
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 1.0e-265 921.4 1009 50.4
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 4.3e-259 899.4 1938 32.1
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 1.0e-244 851.7 1922 31.7
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 7.1e-238 828.9 1854 31.6
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 3.7e-210 736.9 1768 30.7
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 1.1e-161 575.9 643 50.9
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 9.8e-139 499.6 766 37.7
Dinv12246 Davidia involucrata HOM05D001072 ORTHO05D006807 4.2e-89 334.7 294 60.2
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 4.7e-72 278.1 563 34.1
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 6.3e-69 267.7 562 30.6
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 3.7e-53 215.3 218 45.9
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 8.6e-50 204.1 218 45.9
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 4.2e-49 201.8 640 27.7
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 8.3e-45 187.6 355 33.5
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 7.8e-43 181.0 163 54.6
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 2.9e-29 136.0 373 25.2
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 7.3e-25 121.3 96 62.5
Ca_27012_v3 Cicer arietinum L. HOM05D000103 ORTHO05D006807 1.1e-23 117.5 177 35.0
RcHm_v2.0_Chr5g0061981 Rosa chinensis HOM05D001072 ORTHO05D006807 3.7e-21 109.0 195 35.9
Psat0s2465g0160 Pisum sativum HOM05D001072 ORTHO05D006807 1.9e-17 96.7 104 56.7
Cpa.g.sc2.314 Carica papaya HOM05D001072 ORTHO05D006807 7.3e-17 94.7 130 40.0
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 3.4e-14 85.9 175 30.9
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 2.2e-13 83.2 108 38.9
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 3.2e-12 79.3 108 38.9
Psat0s3437g0080 Pisum sativum HOM05D001072 ORTHO05D006807 7.3e-09 68.2 92 44.6


User provided reference genes

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