Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 9.7e-181 636.7 328 100.0
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 1.0e-161 573.5 328 87.5
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 3.2e-160 568.5 328 87.2
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 5.2e-158 561.2 328 86.0
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 1.1e-157 560.1 328 86.9
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 1.1e-155 553.5 328 86.0
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 7.0e-155 550.8 328 85.4
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 1.2e-154 550.1 328 85.1
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 3.5e-154 548.5 328 84.5
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 7.7e-154 547.4 329 84.2
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 5.5e-152 541.2 329 83.0
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 9.2e-139 497.3 324 78.1
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 9.2e-139 497.3 329 75.7
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 2.0e-138 496.1 325 77.8
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 2.0e-138 496.1 326 75.5
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 2.9e-137 492.3 328 75.3
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 5.0e-137 491.5 328 75.3
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.1e-136 490.3 328 75.0
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 5.6e-136 488.0 325 76.0
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 9.5e-136 487.3 327 75.2
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 2.1e-135 486.1 328 74.4
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 2.8e-135 485.7 328 75.9
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 1.4e-134 483.4 326 72.1
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 1.8e-134 483.0 327 73.1
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 2.6e-133 479.2 331 71.9
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 3.4e-133 478.8 327 72.8
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 4.4e-133 478.4 352 71.6
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 4.4e-133 478.4 329 73.6
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 7.5e-133 477.6 327 72.8
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 7.5e-133 477.6 326 73.3
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 9.8e-133 477.2 329 73.6
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.7e-132 476.5 328 72.6
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 2.2e-132 476.1 324 74.1
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 3.7e-132 475.3 345 70.1
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 4.9e-132 474.9 328 72.3
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 4.9e-132 474.9 328 72.9
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 3.2e-131 472.2 328 72.6
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 4.1e-131 471.9 330 73.6
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 7.0e-131 471.1 328 71.0
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.2e-130 470.3 328 71.6
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 1.2e-130 470.3 330 71.8
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 3.5e-130 468.8 328 76.2
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 4.6e-130 468.4 328 71.0
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 3.0e-129 465.7 331 73.1
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 2.5e-128 462.6 331 71.0
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.5e-128 462.6 330 72.7
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 5.6e-128 461.5 330 70.9
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 2.8e-127 459.1 330 71.8
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 8.0e-127 457.6 328 70.1
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 1.8e-126 456.4 327 69.4
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.8e-126 456.4 330 72.1
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 4.0e-126 455.3 329 69.9
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 5.2e-126 454.9 330 71.5
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 8.9e-126 454.1 293 76.1
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 8.9e-126 454.1 330 71.5
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 3.4e-125 452.2 329 67.2
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 9.8e-125 450.7 329 66.9
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 1.7e-124 449.9 329 69.9
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 3.7e-124 448.7 331 69.8
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 4.9e-124 448.4 332 70.8
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 4.9e-124 448.4 399 62.2
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 6.4e-124 448.0 328 68.6
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 3.2e-123 445.7 328 70.1
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 4.1e-123 445.3 331 68.9
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.6e-122 443.4 329 68.7
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 1.6e-122 443.4 329 69.0
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.0e-122 443.0 330 68.8
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 2.0e-122 443.0 328 69.2
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 2.7e-122 442.6 329 68.7
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 3.5e-122 442.2 327 70.3
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 6.0e-122 441.4 330 70.6
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 6.0e-122 441.4 360 63.9
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 6.0e-122 441.4 329 69.0
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 7.8e-122 441.0 322 71.1
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.0e-121 440.7 330 68.5
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 1.0e-121 440.7 363 63.6
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.3e-121 440.3 330 68.5
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 1.7e-121 439.9 329 69.0
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 3.0e-121 439.1 328 70.1
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 5.0e-121 438.3 325 69.5
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 1.8e-118 429.9 330 66.7
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 2.3e-118 429.5 327 67.0
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 3.1e-118 429.1 327 66.4
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 1.2e-117 427.2 326 67.2
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 4.4e-117 425.2 327 64.5
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 3.7e-116 422.2 327 65.7
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 3.7e-116 422.2 330 67.3
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 6.4e-116 421.4 327 65.4
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 6.4e-116 421.4 329 65.3
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 8.3e-116 421.0 329 65.7
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.1e-115 420.6 327 64.8
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 5.4e-115 418.3 329 65.3
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 5.4e-115 418.3 328 66.2
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 7.1e-115 417.9 328 66.8
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 1.2e-114 417.2 337 62.6
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 1.6e-114 416.8 327 64.8
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 1.0e-113 414.1 330 68.2
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 1.0e-113 414.1 328 64.3
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 2.3e-113 412.9 276 75.4
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 2.3e-113 412.9 327 64.5
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 4.3e-112 408.7 330 66.7
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.8e-111 406.0 325 66.5
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 1.9e-107 393.3 283 71.0
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 4.6e-106 388.7 324 64.8
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 1.1e-102 377.5 326 59.2
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 8.9e-102 374.4 328 62.8
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 2.2e-100 369.8 327 59.0
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 6.6e-97 358.2 327 59.3
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 4.2e-91 339.0 326 58.0
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 7.9e-90 334.7 330 54.5
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 1.1e-88 330.9 323 57.6
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 5.3e-86 322.0 330 54.5
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 6.9e-86 321.6 319 54.9
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 5.8e-85 318.5 319 54.9
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 1.3e-81 307.4 276 60.1
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 2.1e-79 300.1 324 49.1
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 2.8e-79 299.7 176 82.4
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.1e-72 277.7 326 50.6
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 1.4e-70 270.8 199 67.8
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 5.3e-70 268.9 286 46.9
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 6.9e-70 268.5 322 45.0
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 3.8e-68 262.7 185 70.8
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 2.5e-64 250.0 142 83.8
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 1.4e-59 234.2 199 63.3
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 7.2e-59 231.9 131 90.1
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 3.6e-58 229.6 197 64.5
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.4e-57 227.6 324 43.8
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 1.8e-54 217.2 278 47.8
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 2.4e-54 216.9 308 39.0
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 3.4e-53 213.0 133 77.4
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 1.1e-51 208.0 158 65.2
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 1.4e-49 201.1 183 56.8
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 1.5e-48 197.6 139 67.6
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.8e-47 193.4 131 73.3
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 1.4e-46 191.0 126 75.4
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 3.2e-43 179.9 128 73.4
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 7.2e-43 178.7 116 75.9
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 3.6e-42 176.4 280 40.4
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 8.0e-42 175.3 151 61.6
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 5.7e-40 169.1 182 50.5
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 1.1e-38 164.9 282 37.6
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.1e-35 154.8 135 57.0
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 3.2e-35 153.3 252 34.9
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 7.2e-35 152.1 153 54.2
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 4.4e-32 142.9 82 82.9
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 7.5e-32 142.1 144 52.1
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 2.8e-31 140.2 196 43.9
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 7.0e-30 135.6 147 49.0
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 7.7e-29 132.1 131 50.4
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.0e-28 131.7 217 39.2
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.2e-26 124.8 114 56.1
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 1.6e-26 124.4 68 92.6
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 2.1e-26 124.0 176 40.3
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 1.8e-22 110.9 195 39.5
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 2.4e-14 84.0 76 55.3
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 2.4e-14 84.0 76 55.3
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 5.4e-14 82.8 76 53.9
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 5.0e-12 76.3 59 69.5
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 3.3e-11 73.6 121 42.1
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 2.6e-08 63.9 60 53.3
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 1.7e-07 61.2 60 56.7


User provided reference genes

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