Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A247T60 Lonicera japonica HOM05D001076 ORTHO05D005313 2.5e-54 215.7 153 100.0
Cc01_g06920 Coffea canephora HOM05D001076 ORTHO05D005313 8.0e-29 131.0 128 83.6
Thecc.09G338800 Theobroma cacao HOM05D001076 ORTHO05D005313 8.0e-29 131.0 137 81.8
CSS0006132 Camellia sinensis var. sinensis HOM05D001076 ORTHO05D005313 3.1e-28 129.0 130 85.4
Sc21g0000250 Simmondsia chinensis HOM05D001076 ORTHO05D005313 3.1e-28 129.0 129 85.3
AUR62037158 Chenopodium quinoa HOM05D001076 ORTHO05D005313 6.8e-28 127.9 128 85.9
Oeu025934.1 Olea europaea HOM05D001076 ORTHO05D005313 6.8e-28 127.9 140 78.6
Dinv10719 Davidia involucrata HOM05D001076 ORTHO05D005313 8.9e-28 127.5 137 81.8
Actinidia06991 Actinidia chinensis HOM05D001076 ORTHO05D005313 1.5e-27 126.7 129 84.5
DCAR_028376 Daucus carota HOM05D001076 ORTHO05D005313 2.6e-27 125.9 140 81.4
vmacro04099 Vaccinium macrocarpon HOM05D001076 ORTHO05D005313 2.6e-27 125.9 137 79.6
Duzib170G0755 Durio zibethinus HOM05D001076 ORTHO05D005313 3.4e-27 125.6 140 78.6
Lj1C252G16 Lonicera japonica HOM05D057894 ORTHO05D023989 3.4e-27 125.6 147 55.8
Gohir.D03G133700 Gossypium hirsutum HOM05D001076 ORTHO05D005313 5.8e-27 124.8 132 81.1
Gorai.003G140800 Gossypium raimondii HOM05D001076 ORTHO05D005313 5.8e-27 124.8 132 81.1
SGA_v2.0_scaffold29G12156 Striga asiatica HOM05D001076 ORTHO05D005313 1.7e-26 123.2 139 54.7
Gohir.D05G101600 Gossypium hirsutum HOM05D001076 ORTHO05D005313 3.7e-26 122.1 140 75.7
Gohir.A05G101900 Gossypium hirsutum HOM05D001076 ORTHO05D005313 6.4e-26 121.3 132 80.3
Hma1.2p1_1632F.1_g294685 Hydrangea macrophylla HOM05D001076 ORTHO05D005313 6.4e-26 121.3 130 82.3
COL.COLO4_18350 Corchorus olitorius HOM05D001076 ORTHO05D005313 8.3e-26 120.9 137 56.2
Gohir.A03G034600 Gossypium hirsutum HOM05D001076 ORTHO05D005313 8.3e-26 120.9 132 80.3
Phvul.008G206300 Phaseolus vulgaris HOM05D001076 ORTHO05D005313 1.1e-25 120.6 137 81.0
VMungo0647G0819 Vigna mungo HOM05D001076 ORTHO05D005313 1.4e-25 120.2 137 81.0
arahy.Tifrunner.gnm1.ann1.LSK0UK Arachis hypogaea HOM05D001076 ORTHO05D005313 3.2e-25 119.0 138 79.7
AUR62025106 Chenopodium quinoa HOM05D001076 ORTHO05D005313 3.2e-25 119.0 128 83.6
Gorai.009G105800 Gossypium raimondii HOM05D001076 ORTHO05D005313 4.1e-25 118.6 140 75.0
GSVIVG01037494001 Vitis vinifera HOM05D001076 ORTHO05D005313 7.0e-25 117.9 132 79.5
Ciclev10014180m.g Citrus clementina HOM05D001076 ORTHO05D005313 1.2e-24 117.1 131 80.2
Peaxi162Scf00973g00315 Petunia axillaris HOM05D001076 ORTHO05D005313 1.2e-24 117.1 132 77.3
arahy.Tifrunner.gnm1.ann1.DIB5MP Arachis hypogaea HOM05D001076 ORTHO05D005313 1.6e-24 116.7 138 79.7
Haze_23682 Corylus avellana HOM05D001076 ORTHO05D005313 1.6e-24 116.7 137 79.6
CsaV3_4G017360 Cucumis sativus L. HOM05D001076 ORTHO05D005313 1.6e-24 116.7 132 81.1
Glyma.02G275300 Glycine max HOM05D001076 ORTHO05D005313 1.6e-24 116.7 128 83.6
Nn7g37238 Nelumbo nucifera HOM05D001076 ORTHO05D005313 1.6e-24 116.7 128 82.8
Glyma.14G040900 Glycine max HOM05D001076 ORTHO05D005313 2.0e-24 116.3 137 79.6
PGR102G0053 Punica granatum HOM05D001076 ORTHO05D005313 3.5e-24 115.5 148 59.5
Actinidia24477 Actinidia chinensis HOM05D001076 ORTHO05D005313 6.0e-24 114.8 137 77.4
ClCG02G024230 Citrullus lanatus HOM05D001076 ORTHO05D005313 6.0e-24 114.8 131 80.9
Manes.05G195600 Manihot esculenta HOM05D001076 ORTHO05D005313 6.0e-24 114.8 128 82.0
Sopen06g029910 Solanum pennellii HOM05D001076 ORTHO05D005313 6.0e-24 114.8 127 80.3
Solyc06g073550.3 Solanum lycopersicum HOM05D001076 ORTHO05D005313 7.8e-24 114.4 127 79.5
EL10Ac9g22356 Beta vulgaris HOM05D001076 ORTHO05D005313 1.0e-23 114.0 129 79.8
Dinv24006 Davidia involucrata HOM05D001076 ORTHO05D005313 1.0e-23 114.0 128 81.2
Lalb_Chr04g0249621 Lupinus albus HOM05D001076 ORTHO05D005313 1.0e-23 114.0 133 78.2
Oeu032039.2 Olea europaea HOM05D001076 ORTHO05D005313 1.0e-23 114.0 140 75.0
Sed0000524 Sechium edule HOM05D001076 ORTHO05D005313 1.3e-23 113.6 131 80.9
MSTRG.17645 Avicennia marina HOM05D001076 ORTHO05D005313 1.7e-23 113.2 128 79.7
CAN.G65.193 Capsicum annuum HOM05D001076 ORTHO05D005313 1.7e-23 113.2 127 79.5
LjContig00564g0003968 Lotus japonicus HOM05D001076 ORTHO05D005313 2.3e-23 112.8 139 76.3
Nitab4.5_0002368g0120 Nicotiana tabacum HOM05D001076 ORTHO05D005313 2.3e-23 112.8 129 76.0
Medtr5g088200 Medicago truncatula HOM05D001076 ORTHO05D005313 3.0e-23 112.5 137 76.6
Potri.001G220100 Populus trichocarpa HOM05D001076 ORTHO05D005313 3.0e-23 112.5 123 84.6
Ca_06162_v3 Cicer arietinum L. HOM05D001076 ORTHO05D005313 3.9e-23 112.1 135 77.8
TAR636G0566 Trochodendron aralioides HOM05D001076 ORTHO05D005313 5.0e-23 111.7 128 80.5
GSVIVG01029892001 Vitis vinifera HOM05D001076 ORTHO05D005313 6.6e-23 111.3 128 77.3
Ah.01g014660 Amaranthus hybridus HOM05D001076 ORTHO05D005313 8.6e-23 110.9 126 81.0
Hund08090 Selenicereus undatus HOM05D001076 ORTHO05D005313 8.6e-23 110.9 128 79.7
Cpa.g.sc34.223 Carica papaya HOM05D001076 ORTHO05D005313 1.1e-22 110.5 129 80.6
Cfa010270 Carpinus fangiana HOM05D001076 ORTHO05D005313 1.1e-22 110.5 137 79.6
PSO384G3024 Papaver somniferum HOM05D001076 ORTHO05D005313 1.9e-22 109.8 128 77.3
HPP92_028183 Vanilla planifolia HOM05D001076 ORTHO05D005313 1.9e-22 109.8 138 75.4
Atru.chr3.2884 Acer truncatum HOM05D001076 ORTHO05D005313 4.3e-22 108.6 132 76.5
Eucgr.B03778 Eucalyptus grandis HOM05D001076 ORTHO05D005313 4.3e-22 108.6 136 77.2
MBI19_g06402_MAGBIO Magnolia biondii HOM05D001076 ORTHO05D005313 5.6e-22 108.2 128 82.0
PSO339G4393 Papaver somniferum HOM05D001076 ORTHO05D005313 1.6e-21 106.7 128 76.6
Psat2g021800 Pisum sativum HOM05D001076 ORTHO05D005313 2.1e-21 106.3 128 78.9
TWI79G0397 Tripterygium wilfordii HOM05D001076 ORTHO05D005313 2.1e-21 106.3 131 77.1
SalBow6G5099 Salvia bowleyana HOM05D001076 ORTHO05D005313 2.8e-21 105.9 132 75.8
Aqoxy1G00101 Aquilegia oxysepala HOM05D001076 ORTHO05D005313 6.2e-21 104.8 132 75.0
Migut.D00698 Erythranthe guttata HOM05D001076 ORTHO05D005313 6.2e-21 104.8 133 76.7
A10p18920 Brassica napus HOM05D001076 ORTHO05D005313 8.1e-21 104.4 138 73.2
BraA10t43969Z Brassica rapa HOM05D001076 ORTHO05D005313 8.1e-21 104.4 138 73.2
BcaB08g36479 Brassica carinata HOM05D001076 ORTHO05D005313 1.1e-20 104.0 128 78.1
Potri.009G018100 Populus trichocarpa HOM05D001076 ORTHO05D005313 1.1e-20 104.0 129 79.1
TPR.G11306 Trifolium pratense HOM05D001076 ORTHO05D005313 1.4e-20 103.6 128 78.9
CDE04G2270 Ceratophyllum demersum HOM05D001076 ORTHO05D005313 2.3e-20 102.8 161 64.0
AL6G32780 Arabidopsis lyrata HOM05D001076 ORTHO05D005313 3.1e-20 102.4 138 72.5
Thhalv10012690m.g Eutrema salsugineum HOM05D001076 ORTHO05D005313 3.1e-20 102.4 138 72.5
AT5G21160 Arabidopsis thaliana HOM05D001076 ORTHO05D005313 5.2e-20 101.7 138 71.7
CDE07G1662 Ceratophyllum demersum HOM05D001076 ORTHO05D005313 5.2e-20 101.7 150 68.7
MSTRG.12429 Avicennia marina HOM05D001076 ORTHO05D005313 6.8e-20 101.3 122 77.9
BcaB05g22768 Brassica carinata HOM05D001076 ORTHO05D005313 8.9e-20 100.9 128 76.6
BcaC03g13841 Brassica carinata HOM05D001076 ORTHO05D005313 8.9e-20 100.9 128 76.6
Carub.0006s1947 Capsella rubella HOM05D001076 ORTHO05D005313 8.9e-20 100.9 153 67.3
BcaC04g19520 Brassica carinata HOM05D001076 ORTHO05D005313 1.2e-19 100.5 138 71.7
C09p54900 Brassica napus HOM05D001076 ORTHO05D005313 1.2e-19 100.5 138 71.7
BolC9t58351H Brassica oleracea HOM05D001076 ORTHO05D005313 1.2e-19 100.5 138 71.7
FvH4_3g27710 Fragaria vesca HOM05D001076 ORTHO05D005313 1.2e-19 100.5 139 72.7
SEGI_14698 Sequoiadendron giganteum HOM05D001076 ORTHO05D005313 1.2e-19 100.5 126 80.2
Lj1A272T47 Lonicera japonica HOM05D057894 ORTHO05D023989 2.0e-19 99.8 47 100.0
Sp6g23360 Schrenkiella parvula HOM05D001076 ORTHO05D005313 2.6e-19 99.4 138 71.7
CARHR191710 Cardamine hirsuta HOM05D001076 ORTHO05D005313 3.4e-19 99.0 132 72.7
RcHm_v2.0_Chr5g0050001 Rosa chinensis HOM05D001076 ORTHO05D005313 3.4e-19 99.0 139 71.9
Os01g0266000 Oryza sativa ssp. japonica HOM05D001076 ORTHO05D005313 1.3e-18 97.1 154 62.3
ATR0307G062 Amborella trichopoda HOM05D001076 ORTHO05D005313 1.7e-18 96.7 126 76.2
CANSAT54G1858 Cannabis sativa HOM05D001076 ORTHO05D005313 2.2e-18 96.3 133 73.7
BolC2t07110H Brassica oleracea HOM05D001076 ORTHO05D005313 2.9e-18 95.9 128 75.0
SalBow3G3618 Salvia bowleyana HOM05D001076 ORTHO05D005313 4.9e-18 95.1 138 60.1
Pp3c11_24960 Physcomitrium patens HOM05D001076 ORTHO05D005313 1.1e-17 94.0 138 68.8
MELO3C014708.2 Cucumis melo HOM05D001076 ORTHO05D005313 1.4e-17 93.6 116 45.7
AagrBONN_evm.TU.Sc2ySwM_117.2161 Anthoceros agrestis HOM05D001076 ORTHO05D005313 1.9e-17 93.2 128 75.0
HanXRQChr06g0180661 Helianthus annuus HOM05D001076 ORTHO05D005313 2.4e-17 92.8 135 68.9
TWI31G1498 Tripterygium wilfordii HOM05D001076 ORTHO05D005313 2.4e-17 92.8 131 74.8
Mapoly0082s0081 Marchantia polymorpha HOM05D001076 ORTHO05D005313 3.2e-17 92.4 138 69.6
QL01p007505 Quercus lobata HOM05D001076 ORTHO05D005313 3.2e-17 92.4 46 87.0
ECA238G0666 Erigeron canadensis HOM05D001076 ORTHO05D005313 1.2e-16 90.5 140 70.0
Sed0024490 Sechium edule HOM05D001076 ORTHO05D005313 1.2e-16 90.5 46 80.4
Migut.N02395 Erythranthe guttata HOM05D001076 ORTHO05D005313 3.5e-16 89.0 125 58.4
BNapus_Darmor_BZH_scaffold_38p01060 Brassica napus HOM05D001076 ORTHO05D005313 1.3e-15 87.0 48 77.1
BraA02t05622Z Brassica rapa HOM05D001076 ORTHO05D005313 1.3e-15 87.0 48 77.1
Aa31LG1G13620 Aethionema arabicum HOM05D001076 ORTHO05D005313 5.1e-15 85.1 48 75.0
Lalb_Chr17g0347591 Lupinus albus HOM05D001076 ORTHO05D005313 5.1e-15 85.1 46 78.3
Zm00001eb333210 Zea mays HOM05D001076 ORTHO05D005313 6.6e-15 84.7 155 63.2
THA.LOC104810960 Tarenaya hassleriana HOM05D001076 ORTHO05D005313 8.6e-15 84.3 46 76.1
MD00G1106400 Malus domestica HOM05D001076 ORTHO05D005313 1.1e-14 84.0 126 73.8
Nitab4.5_0010831g0020 Nicotiana tabacum HOM05D001076 ORTHO05D005313 1.9e-14 83.2 46 76.1
Sabra09G0010600 Salix brachista HOM05D001076 ORTHO05D005313 1.9e-14 83.2 46 76.1
AagrBONN_evm.TU.Sc2ySwM_228.5227 Anthoceros agrestis HOM05D001076 ORTHO05D005313 7.3e-14 81.3 124 72.6
MD11G1183000 Malus domestica HOM05D001076 ORTHO05D005313 7.3e-14 81.3 148 64.9
Prupe.6G155800 Prunus persica HOM05D001076 ORTHO05D005313 1.6e-13 80.1 46 76.1
Pp3c7_8450 Physcomitrium patens HOM05D001076 ORTHO05D005313 2.8e-13 79.3 126 71.4
CBR_g40192 Chara braunii HOM05D001076 ORTHO05D005313 4.7e-13 78.6 151 62.3
SGA_v2.0_scaffold79G25564 Striga asiatica HOM05D001076 ORTHO05D005313 1.8e-12 76.6 44 70.5
Cre10.g441200 Chlamydomonas reinhardtii HOM05D001076 ORTHO05D005313 5.2e-12 75.1 126 50.8
MD11G1175800 Malus domestica HOM05D001076 ORTHO05D005313 1.2e-11 73.9 43 74.4
Lsat_1_v5_gn_2_38521 Lactuca sativa HOM05D001076 ORTHO05D005313 8.4e-10 67.8 144 34.7
SMO119G0028 Selaginella moellendorffii HOM05D001076 ORTHO05D005313 2.4e-09 66.2 131 64.9
MCO09G615 Micromonas commoda HOM05D001076 ORTHO05D005313 3.9e-07 58.9 44 56.8
BcaB01g04759 Brassica carinata HOM05D001076 ORTHO05D023989 1.1e-06 57.4 103 35.9


User provided reference genes

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